Wall clock time and date at job start Tue Mar 31 2020 19:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35135 * 126.44119 * 2 1 4 4 O 1.33936 * 108.76765 * 179.74683 * 3 2 1 5 5 C 1.34916 * 109.38336 * 0.37885 * 4 3 2 6 6 C 1.46655 * 125.98603 * 179.88326 * 5 4 3 7 7 O 1.21703 * 119.99810 * 179.69284 * 6 5 4 8 8 N 1.34777 * 120.00110 * 359.42139 * 6 5 4 9 9 C 1.47012 * 125.64690 * 0.29114 * 8 6 5 10 10 C 1.54327 * 107.27214 * 181.02609 * 9 8 6 11 11 C 1.55156 * 102.93829 * 22.19419 * 10 9 8 12 12 H 1.09001 * 111.00392 * 82.61232 * 11 10 9 13 13 C 1.53004 * 111.00379 * 206.42100 * 11 10 9 14 14 N 1.46898 * 109.47097 * 185.00214 * 13 11 10 15 15 C 1.46897 * 111.00007 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47352 * 180.02562 * 15 14 13 17 17 O 1.21297 * 119.99908 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00218 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99794 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00340 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99685 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00254 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00064 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46894 * 59.99961 * 23 21 19 25 25 H 1.48493 * 109.47521 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47071 * 300.00491 * 23 21 19 27 27 C 1.47427 * 125.64684 * 179.97438 * 8 6 5 28 28 C 1.36542 * 108.02307 * 359.62620 * 5 4 3 29 29 H 1.08995 * 109.47446 * 270.02248 * 1 2 3 30 30 H 1.08997 * 109.46966 * 30.02924 * 1 2 3 31 31 H 1.09002 * 109.46877 * 150.02704 * 1 2 3 32 32 H 1.07995 * 125.61658 * 359.94600 * 3 2 1 33 33 H 1.08997 * 109.88673 * 300.44865 * 9 8 6 34 34 H 1.09005 * 109.88137 * 61.45852 * 9 8 6 35 35 H 1.08996 * 110.72195 * 140.55646 * 10 9 8 36 36 H 1.09005 * 110.71806 * 263.65725 * 10 9 8 37 37 H 1.08994 * 109.47227 * 305.00133 * 13 11 10 38 38 H 1.09003 * 109.46603 * 65.00826 * 13 11 10 39 39 H 1.00903 * 111.00202 * 303.95466 * 14 13 11 40 40 H 1.09005 * 109.47272 * 300.00028 * 15 14 13 41 41 H 1.08997 * 109.47340 * 59.99997 * 15 14 13 42 42 H 0.96994 * 119.99955 * 359.97438 * 18 16 15 43 43 H 0.96998 * 120.00504 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.36421 * 274.74463 * 27 8 6 45 45 H 1.08998 * 110.36877 * 37.06534 * 27 8 6 46 46 H 1.08005 * 126.64448 * 180.24938 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0056 5 6 3.6261 -0.6680 0.0009 6 6 4.8380 -1.4940 0.0022 7 8 4.7472 -2.7076 0.0031 8 7 6.0522 -0.9090 -0.0032 9 6 6.3055 0.5391 -0.0046 10 6 7.8358 0.7365 -0.0377 11 6 8.3466 -0.6060 -0.6242 12 1 8.2828 -0.6064 -1.7123 13 6 9.7755 -0.8982 -0.1616 14 7 10.2679 -2.1107 -0.8288 15 6 11.6400 -2.4232 -0.4075 16 6 12.1101 -3.6699 -1.1115 17 8 11.3743 -4.2422 -1.8876 18 7 13.3478 -4.1496 -0.8780 19 6 13.7753 -5.2841 -1.5182 20 1 13.1201 -5.7937 -2.2092 21 6 15.0515 -5.7784 -1.2779 22 7 15.8485 -5.1587 -0.4367 23 14 15.6337 -7.3245 -2.1495 24 1 15.6043 -7.1058 -3.6180 25 1 17.0206 -7.6406 -1.7233 26 1 14.7387 -8.4568 -1.7998 27 6 7.3462 -1.6154 -0.0022 28 6 2.3409 -1.1291 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5134 32 1 1.9770 2.1145 -0.0008 33 1 5.8539 0.9937 -0.8863 34 1 5.8909 0.9888 0.8977 35 1 8.1033 1.5686 -0.6889 36 1 8.2260 0.8946 0.9678 37 1 10.4192 -0.0564 -0.4166 38 1 9.7842 -1.0485 0.9180 39 1 9.6516 -2.8917 -0.6605 40 1 12.2970 -1.5920 -0.6638 41 1 11.6614 -2.5842 0.6703 42 1 13.9361 -3.6922 -0.2572 43 1 16.7396 -5.5035 -0.2692 44 1 7.6406 -1.8661 1.0170 45 1 7.2873 -2.5160 -0.6133 46 1 2.0267 -2.1624 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714360098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:31 Heat of formation + Delta-G solvation = -54.751292 kcal Electronic energy + Delta-G solvation = -27604.917936 eV Core-core repulsion = 23496.090008 eV Total energy + Delta-G solvation = -4108.827928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.08678 -40.17288 -38.39414 -37.85836 -35.43786 -34.61334 -33.84172 -32.23012 -31.19195 -30.83336 -29.62184 -27.96098 -26.99633 -25.44184 -24.12853 -22.92485 -22.31383 -21.40513 -20.54730 -19.63979 -19.17534 -17.90783 -17.77269 -17.04414 -16.85525 -16.62718 -15.86028 -15.55610 -15.41998 -14.71948 -14.48764 -14.37277 -14.02368 -13.88591 -13.68263 -13.60052 -13.50976 -13.46504 -13.23529 -13.07986 -12.95678 -12.56299 -12.40168 -12.11551 -12.00422 -11.57666 -11.49886 -11.22119 -11.02165 -10.95895 -10.89672 -10.51999 -10.42197 -10.19117 -10.10777 -9.47844 -9.12655 -8.84475 -8.45650 -8.06707 -7.93922 -6.39637 -3.80399 0.71486 1.90592 2.26360 2.75092 2.88440 3.22326 3.27665 3.32448 3.92497 3.95892 4.11620 4.26721 4.27876 4.35754 4.44376 4.53984 4.71967 4.87567 4.97992 5.06979 5.13492 5.16473 5.21829 5.26842 5.28056 5.32785 5.38214 5.48769 5.51838 5.55172 5.56231 5.59836 5.66901 5.79876 5.83980 5.93845 5.98752 6.00305 6.12802 6.28576 6.49045 7.11058 7.19627 7.57221 7.63489 7.73990 8.08366 8.63533 9.20033 9.56401 10.08106 10.78026 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.001699 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.832799 B =16477.673472 C =17253.331813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.193 4.193 3 C -0.014 4.014 4 O -0.159 6.159 5 C -0.069 4.069 6 C 0.613 3.387 7 O -0.517 6.517 8 N -0.609 5.609 9 C 0.103 3.897 10 C -0.126 4.126 11 C -0.097 4.097 12 H 0.099 0.901 13 C 0.071 3.929 14 N -0.670 5.670 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.106 3.894 28 C -0.119 4.119 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.209 0.791 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.031 0.969 39 H 0.350 0.650 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.926 19.000 5.340 31.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.194 4.194 3 C -0.084 4.084 4 O -0.054 6.054 5 C -0.121 4.121 6 C 0.402 3.598 7 O -0.394 6.394 8 N -0.342 5.342 9 C -0.020 4.020 10 C -0.164 4.164 11 C -0.117 4.117 12 H 0.118 0.882 13 C -0.059 4.059 14 N -0.303 5.303 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.015 4.015 28 C -0.140 4.140 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.169 0.831 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -24.851 18.373 4.313 31.205 hybrid contribution 0.434 -0.709 0.945 1.259 sum -24.417 17.664 5.258 30.592 Atomic orbital electron populations 1.20190 0.88574 1.02949 1.02380 1.20500 0.97760 0.92373 1.08783 1.24222 0.80134 1.00045 1.03977 1.84144 1.29059 1.21671 1.70540 1.21965 0.95881 0.80549 1.13674 1.16173 0.80248 0.86019 0.77384 1.90926 1.85385 1.12050 1.51065 1.48324 1.05413 1.08267 1.72200 1.22107 0.96905 0.80573 1.02369 1.22690 0.93140 0.98141 1.02454 1.22473 0.93723 0.93596 1.01886 0.88222 1.21896 0.93829 0.94556 0.95654 1.60092 1.02873 1.06669 1.60649 1.21669 0.90981 0.98314 0.97235 1.19817 0.83614 0.87240 0.86797 1.90532 1.55368 1.61427 1.39316 1.41851 1.12547 1.25240 1.40397 1.19669 0.98500 1.02189 1.22611 0.87961 1.25253 0.95912 0.99537 0.97189 1.69601 1.08974 1.40646 1.35158 0.85913 0.77485 0.81247 0.79549 1.19888 1.20994 1.19926 1.22521 0.80935 0.96627 1.01458 1.21863 0.90483 1.00690 1.00918 0.91221 0.91411 0.91198 0.77479 0.90881 0.91031 0.89441 0.90204 0.90329 0.95113 0.83091 0.89535 0.93832 0.77469 0.91850 0.91006 0.89308 0.82241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.39 36.00 0.37 -0.02 16 2 C -0.19 -1.43 6.14 -104.93 -0.64 -2.07 16 3 C -0.01 -0.09 12.00 29.63 0.36 0.27 16 4 O -0.16 -1.40 8.27 4.98 0.04 -1.36 16 5 C -0.07 -0.76 6.95 -36.80 -0.26 -1.01 16 6 C 0.61 8.15 7.82 -12.86 -0.10 8.05 16 7 O -0.52 -8.60 17.12 5.19 0.09 -8.51 16 8 N -0.61 -6.90 3.32 -171.92 -0.57 -7.47 16 9 C 0.10 0.84 5.55 -3.07 -0.02 0.82 16 10 C -0.13 -0.89 6.41 -24.89 -0.16 -1.05 16 11 C -0.10 -0.96 3.26 -88.35 -0.29 -1.25 16 12 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 13 C 0.07 0.79 5.19 -3.82 -0.02 0.77 16 14 N -0.67 -10.59 6.13 -115.06 -0.70 -11.30 16 15 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 16 C 0.44 10.49 7.82 -10.99 -0.09 10.40 16 17 O -0.58 -16.08 15.78 5.54 0.09 -15.99 16 18 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 19 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 23 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.11 1.22 5.86 -2.40 -0.01 1.21 16 28 C -0.12 -1.18 10.57 -39.39 -0.42 -1.60 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.21 0.47 8.06 -52.49 -0.42 0.04 16 33 H 0.07 0.57 7.68 -51.93 -0.40 0.17 16 34 H 0.07 0.53 7.78 -51.93 -0.40 0.12 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.50 8.04 -51.93 -0.42 0.09 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.03 0.32 7.96 -51.93 -0.41 -0.09 16 39 H 0.35 5.84 7.93 -39.29 -0.31 5.53 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 45 H 0.09 1.20 8.03 -51.93 -0.42 0.78 16 46 H 0.16 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -34.71 389.09 -7.93 -42.64 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.83 Total: 11.02 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -1.54 Total: 7.26 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.61 Total: -57.19 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: 0.22 Total: -25.86 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.71 -7.93 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714360098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.109 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds