Wall clock time and date at job start Tue Mar 31 2020 19:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35135 * 126.44119 * 2 1 4 4 O 1.33936 * 108.76765 * 179.74683 * 3 2 1 5 5 C 1.34916 * 109.38336 * 0.37885 * 4 3 2 6 6 C 1.46655 * 125.98603 * 179.88326 * 5 4 3 7 7 O 1.21703 * 119.99810 * 179.69284 * 6 5 4 8 8 N 1.34777 * 120.00110 * 359.42139 * 6 5 4 9 9 C 1.47012 * 125.64690 * 0.29114 * 8 6 5 10 10 C 1.54327 * 107.27214 * 181.02609 * 9 8 6 11 11 C 1.55156 * 102.93829 * 22.19419 * 10 9 8 12 12 H 1.09001 * 111.00392 * 82.61232 * 11 10 9 13 13 C 1.53004 * 111.00379 * 206.42100 * 11 10 9 14 14 N 1.46898 * 109.47097 * 185.00214 * 13 11 10 15 15 C 1.46897 * 111.00007 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47352 * 180.02562 * 15 14 13 17 17 O 1.21297 * 119.99908 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00218 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99794 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00340 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99685 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00254 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00064 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46894 * 59.99961 * 23 21 19 25 25 H 1.48493 * 109.47521 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47071 * 300.00491 * 23 21 19 27 27 C 1.47427 * 125.64684 * 179.97438 * 8 6 5 28 28 C 1.36542 * 108.02307 * 359.62620 * 5 4 3 29 29 H 1.08995 * 109.47446 * 270.02248 * 1 2 3 30 30 H 1.08997 * 109.46966 * 30.02924 * 1 2 3 31 31 H 1.09002 * 109.46877 * 150.02704 * 1 2 3 32 32 H 1.07995 * 125.61658 * 359.94600 * 3 2 1 33 33 H 1.08997 * 109.88673 * 300.44865 * 9 8 6 34 34 H 1.09005 * 109.88137 * 61.45852 * 9 8 6 35 35 H 1.08996 * 110.72195 * 140.55646 * 10 9 8 36 36 H 1.09005 * 110.71806 * 263.65725 * 10 9 8 37 37 H 1.08994 * 109.47227 * 305.00133 * 13 11 10 38 38 H 1.09003 * 109.46603 * 65.00826 * 13 11 10 39 39 H 1.00903 * 111.00202 * 303.95466 * 14 13 11 40 40 H 1.09005 * 109.47272 * 300.00028 * 15 14 13 41 41 H 1.08997 * 109.47340 * 59.99997 * 15 14 13 42 42 H 0.96994 * 119.99955 * 359.97438 * 18 16 15 43 43 H 0.96998 * 120.00504 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.36421 * 274.74463 * 27 8 6 45 45 H 1.08998 * 110.36877 * 37.06534 * 27 8 6 46 46 H 1.08005 * 126.64448 * 180.24938 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0056 5 6 3.6261 -0.6680 0.0009 6 6 4.8380 -1.4940 0.0022 7 8 4.7472 -2.7076 0.0031 8 7 6.0522 -0.9090 -0.0032 9 6 6.3055 0.5391 -0.0046 10 6 7.8358 0.7365 -0.0377 11 6 8.3466 -0.6060 -0.6242 12 1 8.2828 -0.6064 -1.7123 13 6 9.7755 -0.8982 -0.1616 14 7 10.2679 -2.1107 -0.8288 15 6 11.6400 -2.4232 -0.4075 16 6 12.1101 -3.6699 -1.1115 17 8 11.3743 -4.2422 -1.8876 18 7 13.3478 -4.1496 -0.8780 19 6 13.7753 -5.2841 -1.5182 20 1 13.1201 -5.7937 -2.2092 21 6 15.0515 -5.7784 -1.2779 22 7 15.8485 -5.1587 -0.4367 23 14 15.6337 -7.3245 -2.1495 24 1 15.6043 -7.1058 -3.6180 25 1 17.0206 -7.6406 -1.7233 26 1 14.7387 -8.4568 -1.7998 27 6 7.3462 -1.6154 -0.0022 28 6 2.3409 -1.1291 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5134 32 1 1.9770 2.1145 -0.0008 33 1 5.8539 0.9937 -0.8863 34 1 5.8909 0.9888 0.8977 35 1 8.1033 1.5686 -0.6889 36 1 8.2260 0.8946 0.9678 37 1 10.4192 -0.0564 -0.4166 38 1 9.7842 -1.0485 0.9180 39 1 9.6516 -2.8917 -0.6605 40 1 12.2970 -1.5920 -0.6638 41 1 11.6614 -2.5842 0.6703 42 1 13.9361 -3.6922 -0.2572 43 1 16.7396 -5.5035 -0.2692 44 1 7.6406 -1.8661 1.0170 45 1 7.2873 -2.5160 -0.6133 46 1 2.0267 -2.1624 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714360098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:30 Heat of formation + Delta-G solvation = -80.658407 kcal Electronic energy + Delta-G solvation = -27606.041353 eV Core-core repulsion = 23496.090008 eV Total energy + Delta-G solvation = -4109.951345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.73890 -41.07376 -40.14596 -38.95343 -36.68250 -35.83518 -35.19298 -33.38002 -33.10073 -31.53007 -30.48668 -28.80465 -28.00976 -26.78011 -25.54439 -23.92438 -23.07031 -22.06772 -21.46606 -20.99373 -20.35968 -19.89339 -18.54842 -18.10670 -17.64873 -17.54253 -17.28276 -16.68688 -16.45134 -16.37095 -16.00260 -15.63600 -15.13080 -15.02319 -14.84381 -14.48126 -14.32063 -14.15175 -14.05438 -13.96311 -13.89900 -13.54806 -13.50609 -13.34027 -13.11559 -12.98285 -12.69458 -12.57541 -12.44199 -12.14929 -12.04801 -11.83881 -11.64943 -11.53328 -11.50642 -10.77990 -10.35388 -10.01839 -9.95313 -9.53359 -9.32306 -8.46927 -5.95734 -0.04751 1.30125 1.39440 1.41248 1.49655 1.52186 1.97969 2.01527 2.05559 2.29151 2.90619 3.20275 3.32461 3.52156 3.55826 3.67911 3.78860 3.93938 4.02998 4.21582 4.28796 4.32151 4.34454 4.41166 4.50196 4.57585 4.59708 4.62005 4.71855 4.79065 4.84090 4.87131 4.88263 4.95283 5.01092 5.06161 5.07737 5.18681 5.35587 5.40389 5.49352 5.83548 5.89052 6.11152 6.24987 6.36371 6.60333 6.79084 7.12459 7.56200 8.12240 8.70122 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.001699 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.832799 B =16477.673472 C =17253.331813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.207 4.207 3 C 0.009 3.991 4 O -0.159 6.159 5 C -0.098 4.098 6 C 0.604 3.396 7 O -0.570 6.570 8 N -0.609 5.609 9 C 0.100 3.900 10 C -0.111 4.111 11 C -0.089 4.089 12 H 0.085 0.915 13 C 0.074 3.926 14 N -0.689 5.689 15 C 0.066 3.934 16 C 0.434 3.566 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.338 4.338 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.268 1.268 26 H -0.274 1.274 27 C 0.103 3.897 28 C -0.127 4.127 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.256 0.744 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.047 0.953 39 H 0.340 0.660 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.326 22.180 6.129 34.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.208 4.208 3 C -0.060 4.060 4 O -0.054 6.054 5 C -0.150 4.150 6 C 0.394 3.606 7 O -0.452 6.452 8 N -0.340 5.340 9 C -0.021 4.021 10 C -0.149 4.149 11 C -0.108 4.108 12 H 0.103 0.897 13 C -0.055 4.055 14 N -0.321 5.321 15 C -0.067 4.067 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.467 4.467 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.199 1.199 27 C -0.019 4.019 28 C -0.148 4.148 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.272 0.728 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.158 0.842 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.231 0.769 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -25.225 21.624 5.126 33.618 hybrid contribution 0.449 -1.614 0.703 1.817 sum -24.776 20.011 5.829 32.376 Atomic orbital electron populations 1.20259 0.86616 1.03860 1.03154 1.20833 0.99155 0.91610 1.09225 1.25184 0.78809 1.01665 1.00369 1.84128 1.30453 1.20249 1.70552 1.21523 0.95063 0.81570 1.16849 1.16553 0.81399 0.85814 0.76793 1.90875 1.86320 1.14239 1.53779 1.48457 1.04755 1.09801 1.71028 1.22337 0.97975 0.78448 1.03351 1.22702 0.91794 0.96759 1.03690 1.22349 0.92635 0.94859 1.01001 0.89665 1.22008 0.94396 0.92849 0.96242 1.60116 1.02000 1.07823 1.62126 1.21540 0.92173 0.95373 0.97564 1.20996 0.82477 0.88437 0.85896 1.90501 1.56346 1.63223 1.41237 1.41914 1.13421 1.24974 1.40633 1.19635 0.99231 1.03961 1.23902 0.90524 1.26012 0.95392 1.02136 0.97527 1.69656 1.09274 1.41600 1.35386 0.85002 0.77528 0.77501 0.78372 1.19771 1.19269 1.19898 1.22501 0.81944 0.96300 1.01155 1.22081 0.91018 1.01387 1.00303 0.90464 0.89212 0.91632 0.72809 0.90239 0.89662 0.87121 0.88505 0.88479 0.93487 0.84222 0.87220 0.91436 0.76867 0.91249 0.90689 0.92529 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.39 71.24 0.74 0.14 16 2 C -0.21 -2.72 6.14 -20.06 -0.12 -2.85 16 3 C 0.01 0.09 12.00 67.10 0.81 0.89 16 4 O -0.16 -2.52 8.27 -5.11 -0.04 -2.56 16 5 C -0.10 -2.21 6.95 24.07 0.17 -2.05 16 6 C 0.60 17.11 7.82 86.44 0.68 17.79 16 7 O -0.57 -20.87 17.12 -4.36 -0.07 -20.95 16 8 N -0.61 -14.08 3.32 -816.05 -2.71 -16.79 16 9 C 0.10 1.44 5.55 86.73 0.48 1.93 16 10 C -0.11 -1.24 6.41 31.78 0.20 -1.04 16 11 C -0.09 -1.66 3.26 -9.32 -0.03 -1.69 16 12 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 13 C 0.07 1.49 5.19 86.30 0.45 1.94 16 14 N -0.69 -21.41 6.13 -517.94 -3.17 -24.58 16 15 C 0.07 2.22 6.17 85.56 0.53 2.75 16 16 C 0.43 21.07 7.82 87.66 0.69 21.75 16 17 O -0.63 -35.89 15.78 -3.08 -0.05 -35.94 16 18 N -0.57 -29.79 5.29 -306.98 -1.62 -31.41 16 19 C -0.34 -19.58 9.68 84.04 0.81 -18.77 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 22 N -0.92 -49.84 13.05 21.66 0.28 -49.55 16 23 Si 0.99 43.65 29.55 68.60 2.03 45.68 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.10 2.46 5.86 86.93 0.51 2.97 16 28 C -0.13 -2.59 10.57 22.39 0.24 -2.35 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 32 H 0.26 -0.20 8.06 -2.91 -0.02 -0.23 16 33 H 0.08 1.06 7.68 -2.39 -0.02 1.05 16 34 H 0.09 1.03 7.78 -2.38 -0.02 1.01 16 35 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.82 8.04 -2.38 -0.02 0.80 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 0.83 7.96 -2.39 -0.02 0.82 16 39 H 0.34 11.70 7.93 -89.69 -0.71 10.99 16 40 H 0.11 3.23 8.14 -2.38 -0.02 3.21 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.40 19.44 7.90 -92.71 -0.73 18.70 16 43 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.07 1.71 7.91 -2.39 -0.02 1.69 16 45 H 0.06 1.69 8.03 -2.39 -0.02 1.68 16 46 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -79.99 389.09 0.81 -79.18 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: -0.43 Total: 35.62 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 6.61 Total: 21.31 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -7.23 Total: -122.34 kcal Atomic # 8 Polarization: -59.28 SS G_CDS: -0.17 Total: -59.45 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -79.99 0.81 -79.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714360098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.478 kcal (2) G-P(sol) polarization free energy of solvation -79.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds