Wall clock time and date at job start Tue Mar 31 2020 19:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41372 * 126.80538 * 2 1 4 4 C 1.35454 * 103.98960 * 180.16768 * 3 2 1 5 5 C 1.50695 * 126.77830 * 179.91247 * 4 3 2 6 6 C 1.50701 * 115.55184 * 329.29968 * 5 4 3 7 7 O 1.21278 * 119.99890 * 99.00110 * 6 5 4 8 8 N 1.34779 * 119.99753 * 279.00208 * 6 5 4 9 9 C 1.46499 * 119.99600 * 174.83203 * 8 6 5 10 10 C 1.53003 * 109.46832 * 179.72781 * 9 8 6 11 11 O 1.42900 * 110.64227 * 66.68793 * 10 9 8 12 12 C 1.55159 * 110.71926 * 190.02317 * 10 9 8 13 13 C 1.54906 * 101.58115 * 153.86476 * 12 10 9 14 14 N 1.47431 * 104.83203 * 322.99164 * 13 12 10 15 15 C 1.36941 * 125.64408 * 204.16318 * 14 13 12 16 16 H 1.08008 * 119.99333 * 145.24681 * 15 14 13 17 17 C 1.38803 * 120.00221 * 325.24253 * 15 14 13 18 18 N 1.31622 * 119.99648 * 165.74745 * 17 15 14 19 19 Si 1.86797 * 120.00221 * 345.74727 * 17 15 14 20 20 H 1.48504 * 109.46928 * 86.68326 * 19 17 15 21 21 H 1.48508 * 109.47124 * 206.67830 * 19 17 15 22 22 H 1.48500 * 109.47186 * 326.68096 * 19 17 15 23 23 C 1.47019 * 108.70199 * 24.12730 * 14 13 12 24 24 C 1.53002 * 117.51790 * 115.00331 * 5 4 3 25 25 C 1.52999 * 60.00071 * 107.47942 * 24 5 4 26 26 O 1.34043 * 106.44048 * 359.64774 * 4 3 2 27 27 N 1.20924 * 111.56841 * 0.24293 * 26 4 3 28 28 H 1.08994 * 109.47089 * 270.25353 * 1 2 3 29 29 H 1.09008 * 109.46885 * 30.25145 * 1 2 3 30 30 H 1.09003 * 109.47266 * 150.25099 * 1 2 3 31 31 H 1.08005 * 128.00477 * 0.07952 * 3 2 1 32 32 H 0.97002 * 119.99922 * 354.56520 * 8 6 5 33 33 H 1.08997 * 109.47529 * 299.72364 * 9 8 6 34 34 H 1.08997 * 109.47064 * 59.72660 * 9 8 6 35 35 H 0.96693 * 114.00071 * 300.70248 * 11 10 9 36 36 H 1.08997 * 111.00902 * 271.93866 * 12 10 9 37 37 H 1.09004 * 111.00011 * 35.79248 * 12 10 9 38 38 H 1.08998 * 110.36922 * 204.15391 * 13 12 10 39 39 H 1.08994 * 110.36944 * 81.82911 * 13 12 10 40 40 H 0.97006 * 119.99876 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.88402 * 239.52264 * 23 14 13 42 42 H 1.09000 * 109.88013 * 118.35849 * 23 14 13 43 43 H 1.09004 * 117.49765 * 214.96832 * 24 5 4 44 44 H 1.09000 * 117.49987 * 359.97438 * 24 5 4 45 45 H 1.08999 * 117.49826 * 252.50812 * 25 24 5 46 46 H 1.08993 * 117.50133 * 107.49115 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1319 0.0000 4 6 3.6025 0.6067 -0.0038 5 6 4.9022 1.3694 -0.0074 6 6 4.8691 2.7069 -0.7010 7 8 4.7491 3.7240 -0.0514 8 7 4.9728 2.7727 -2.0432 9 6 4.8272 4.0602 -2.7268 10 6 4.9942 3.8589 -4.2343 11 8 3.9174 3.0809 -4.7609 12 6 5.0968 5.2251 -4.9625 13 6 5.9064 4.8436 -6.2269 14 7 6.8792 3.8377 -5.7628 15 6 8.0763 3.5493 -6.3621 16 1 8.9300 3.2765 -5.7593 17 6 8.1924 3.6075 -7.7440 18 7 9.3832 3.6098 -8.3048 19 14 6.6589 3.6826 -8.8079 20 1 6.2323 5.0966 -8.9623 21 1 6.9547 3.1061 -10.1442 22 1 5.5705 2.9047 -8.1631 23 6 6.3517 3.1963 -4.5496 24 6 5.8058 1.2321 1.2197 25 6 6.1967 0.5588 -0.0974 26 8 3.4537 -0.7254 0.0021 27 7 2.2867 -1.0424 0.0041 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8878 -0.5178 30 1 -0.3634 -0.8922 -0.5099 31 1 2.0710 2.1742 0.0012 32 1 5.1476 1.9681 -2.5561 33 1 3.8383 4.4704 -2.5224 34 1 5.5890 4.7513 -2.3659 35 1 3.8364 2.2025 -4.3649 36 1 4.1091 5.6007 -5.2297 37 1 5.6384 5.9512 -4.3562 38 1 6.4239 5.7169 -6.6239 39 1 5.2490 4.4148 -6.9832 40 1 9.4644 3.6509 -9.2706 41 1 7.0410 3.3500 -3.7193 42 1 6.2117 2.1297 -4.7252 43 1 6.3763 2.1092 1.5253 44 1 5.4600 0.5903 2.0300 45 1 6.1083 -0.5261 -0.1536 46 1 7.0244 0.9928 -0.6583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716925309.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:37 Heat of formation + Delta-G solvation = 34.577928 kcal Electronic energy + Delta-G solvation = -29537.569113 eV Core-core repulsion = 25432.614790 eV Total energy + Delta-G solvation = -4104.954323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.26054 -40.53466 -39.00128 -37.09499 -35.42565 -35.10444 -34.41050 -32.30977 -31.84724 -30.19252 -29.04164 -28.70825 -26.54056 -24.94078 -23.65145 -23.33068 -22.74439 -21.50724 -20.90579 -20.09121 -19.74654 -18.43411 -17.89448 -17.13602 -17.07755 -16.44955 -16.09357 -15.82841 -15.27518 -15.04962 -14.71630 -14.29649 -14.12850 -13.96136 -13.72312 -13.66174 -13.51087 -13.34184 -13.12116 -12.81403 -12.64931 -12.15774 -12.03437 -11.92759 -11.79265 -11.70887 -11.49494 -11.26331 -11.23998 -10.94244 -10.82303 -10.40481 -10.31862 -10.09794 -10.07270 -9.78593 -9.59302 -9.50733 -9.32477 -8.68177 -6.91099 -6.03138 -3.49378 1.04399 1.88290 1.97139 2.57688 3.00396 3.24073 3.32829 3.44702 3.52152 3.83517 3.86635 4.18625 4.21181 4.33396 4.41427 4.49102 4.55316 4.71993 4.88408 4.91811 5.04256 5.10254 5.11727 5.14412 5.17479 5.21893 5.33546 5.39140 5.43082 5.49385 5.56078 5.64657 5.68415 5.77753 5.80449 6.00280 6.09271 6.15972 6.32999 6.35877 6.59783 6.70280 7.14878 7.70191 7.81241 7.85901 7.92922 8.26789 8.76524 9.60111 10.14381 11.12548 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.002934 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.215790 B = 9539.477770 C = 9901.033361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.020 3.980 3 C -0.216 4.216 4 C 0.014 3.986 5 C -0.095 4.095 6 C 0.563 3.437 7 O -0.523 6.523 8 N -0.717 5.717 9 C 0.104 3.896 10 C 0.103 3.897 11 O -0.544 6.544 12 C -0.114 4.114 13 C 0.115 3.885 14 N -0.603 5.603 15 C -0.251 4.251 16 H 0.085 0.915 17 C 0.033 3.967 18 N -0.908 5.908 19 Si 0.890 3.110 20 H -0.284 1.284 21 H -0.301 1.301 22 H -0.269 1.269 23 C 0.111 3.889 24 C -0.124 4.124 25 C -0.149 4.149 26 O 0.104 5.896 27 N -0.362 5.362 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.171 0.829 32 H 0.404 0.596 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.369 0.631 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.031 0.969 40 H 0.265 0.735 41 H 0.040 0.960 42 H 0.034 0.966 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.070 -5.190 18.858 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C -0.237 4.237 4 C -0.050 4.050 5 C -0.100 4.100 6 C 0.346 3.654 7 O -0.398 6.398 8 N -0.368 5.368 9 C -0.020 4.020 10 C 0.062 3.938 11 O -0.349 6.349 12 C -0.153 4.153 13 C -0.010 4.010 14 N -0.330 5.330 15 C -0.378 4.378 16 H 0.102 0.898 17 C -0.167 4.167 18 N -0.550 5.550 19 Si 0.720 3.280 20 H -0.211 1.211 21 H -0.229 1.229 22 H -0.194 1.194 23 C -0.014 4.014 24 C -0.162 4.162 25 C -0.186 4.186 26 O 0.038 5.962 27 N -0.067 5.067 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.189 0.811 32 H 0.239 0.761 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.216 0.784 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.135 0.865 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.305 -5.242 18.749 24.158 hybrid contribution -0.752 -0.053 -0.706 1.033 sum -15.057 -5.294 18.042 24.088 Atomic orbital electron populations 1.20190 0.85722 1.04022 1.03462 1.23590 0.99157 0.88556 1.02545 1.22375 0.90843 1.01323 1.09173 1.22704 0.95251 0.83697 1.03330 1.19344 0.88004 0.95008 1.07647 1.18838 0.76395 0.88099 0.82047 1.90739 1.48500 1.35446 1.65133 1.45936 1.72531 1.11839 1.06539 1.22131 1.03046 0.85144 0.91645 1.22531 0.87587 0.94098 0.89629 1.86602 1.51574 1.30258 1.66460 1.22740 1.00990 0.93395 0.98151 1.21991 0.91615 0.93061 0.94294 1.44559 1.19555 1.39496 1.29433 1.18539 0.85313 1.44416 0.89561 0.89772 1.25417 0.96368 0.98191 0.96728 1.69775 1.21920 1.52502 1.10782 0.86771 0.84005 0.78081 0.79147 1.21103 1.22910 1.19392 1.22065 0.91721 0.95769 0.91885 1.23177 0.98577 1.03479 0.90962 1.23323 0.94380 1.00413 1.00524 1.84811 1.21796 1.21905 1.67730 1.73872 0.89080 1.23747 1.20004 0.90079 0.89818 0.90398 0.81138 0.76142 0.90429 0.89740 0.78449 0.90406 0.89567 0.92365 0.95163 0.92508 0.94191 0.94818 0.86595 0.87192 0.86549 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.47 36.01 0.38 -0.14 16 2 C 0.02 0.20 7.33 -82.10 -0.60 -0.40 16 3 C -0.22 -2.17 10.60 -39.38 -0.42 -2.59 16 4 C 0.01 0.14 6.77 -35.30 -0.24 -0.10 16 5 C -0.10 -0.89 2.39 -156.81 -0.38 -1.26 16 6 C 0.56 6.45 6.60 -10.98 -0.07 6.38 16 7 O -0.52 -7.67 17.02 5.56 0.09 -7.58 16 8 N -0.72 -7.69 5.13 -60.29 -0.31 -8.00 16 9 C 0.10 1.28 4.80 -4.04 -0.02 1.26 16 10 C 0.10 1.53 0.93 -88.78 -0.08 1.45 16 11 O -0.54 -8.12 13.10 -35.23 -0.46 -8.58 16 12 C -0.11 -1.83 6.26 -24.58 -0.15 -1.99 16 13 C 0.12 2.44 4.93 -2.53 -0.01 2.43 16 14 N -0.60 -14.11 2.99 -170.08 -0.51 -14.62 16 15 C -0.25 -6.97 10.54 -15.06 -0.16 -7.13 16 16 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 17 C 0.03 0.96 5.47 -17.43 -0.10 0.87 16 18 N -0.91 -27.62 13.97 55.49 0.78 -26.84 16 19 Si 0.89 22.66 24.59 -169.99 -4.18 18.48 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.27 -6.84 6.66 56.52 0.38 -6.46 16 23 C 0.11 2.02 5.76 -3.07 -0.02 2.01 16 24 C -0.12 -0.95 9.87 -26.73 -0.26 -1.22 16 25 C -0.15 -1.08 9.88 -26.73 -0.26 -1.35 16 26 O 0.10 1.14 10.96 17.17 0.19 1.33 16 27 N -0.36 -4.25 12.07 33.42 0.40 -3.85 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.40 3.79 7.48 -40.82 -0.31 3.49 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.09 8.03 -51.93 -0.42 0.68 16 35 H 0.37 4.15 8.44 45.56 0.38 4.54 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.25 7.96 -51.93 -0.41 0.83 16 38 H 0.06 1.28 7.92 -51.93 -0.41 0.87 16 39 H 0.03 0.70 5.15 -51.93 -0.27 0.43 16 40 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 42 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 43 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.12 0.73 8.00 -51.93 -0.42 0.32 16 46 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -34.66 381.74 -6.70 -41.36 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.06 Total: 4.32 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.40 Total: -1.78 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.36 Total: -53.31 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.18 Total: -14.83 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.18 Total: 18.48 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.66 -6.70 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716925309.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.939 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds