Wall clock time and date at job start Tue Mar 31 2020 19:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41372 * 126.80538 * 2 1 4 4 C 1.35454 * 103.98960 * 180.16768 * 3 2 1 5 5 C 1.50695 * 126.77830 * 179.91247 * 4 3 2 6 6 C 1.50701 * 115.55184 * 329.29968 * 5 4 3 7 7 O 1.21278 * 119.99890 * 99.00110 * 6 5 4 8 8 N 1.34779 * 119.99753 * 279.00208 * 6 5 4 9 9 C 1.46499 * 119.99600 * 174.83203 * 8 6 5 10 10 C 1.53003 * 109.46832 * 179.72781 * 9 8 6 11 11 O 1.42900 * 110.64227 * 66.68793 * 10 9 8 12 12 C 1.55159 * 110.71926 * 190.02317 * 10 9 8 13 13 C 1.54906 * 101.58115 * 153.86476 * 12 10 9 14 14 N 1.47431 * 104.83203 * 322.99164 * 13 12 10 15 15 C 1.36941 * 125.64408 * 204.16318 * 14 13 12 16 16 H 1.08008 * 119.99333 * 145.24681 * 15 14 13 17 17 C 1.38803 * 120.00221 * 325.24253 * 15 14 13 18 18 N 1.31622 * 119.99648 * 165.74745 * 17 15 14 19 19 Si 1.86797 * 120.00221 * 345.74727 * 17 15 14 20 20 H 1.48504 * 109.46928 * 86.68326 * 19 17 15 21 21 H 1.48508 * 109.47124 * 206.67830 * 19 17 15 22 22 H 1.48500 * 109.47186 * 326.68096 * 19 17 15 23 23 C 1.47019 * 108.70199 * 24.12730 * 14 13 12 24 24 C 1.53002 * 117.51790 * 115.00331 * 5 4 3 25 25 C 1.52999 * 60.00071 * 107.47942 * 24 5 4 26 26 O 1.34043 * 106.44048 * 359.64774 * 4 3 2 27 27 N 1.20924 * 111.56841 * 0.24293 * 26 4 3 28 28 H 1.08994 * 109.47089 * 270.25353 * 1 2 3 29 29 H 1.09008 * 109.46885 * 30.25145 * 1 2 3 30 30 H 1.09003 * 109.47266 * 150.25099 * 1 2 3 31 31 H 1.08005 * 128.00477 * 0.07952 * 3 2 1 32 32 H 0.97002 * 119.99922 * 354.56520 * 8 6 5 33 33 H 1.08997 * 109.47529 * 299.72364 * 9 8 6 34 34 H 1.08997 * 109.47064 * 59.72660 * 9 8 6 35 35 H 0.96693 * 114.00071 * 300.70248 * 11 10 9 36 36 H 1.08997 * 111.00902 * 271.93866 * 12 10 9 37 37 H 1.09004 * 111.00011 * 35.79248 * 12 10 9 38 38 H 1.08998 * 110.36922 * 204.15391 * 13 12 10 39 39 H 1.08994 * 110.36944 * 81.82911 * 13 12 10 40 40 H 0.97006 * 119.99876 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.88402 * 239.52264 * 23 14 13 42 42 H 1.09000 * 109.88013 * 118.35849 * 23 14 13 43 43 H 1.09004 * 117.49765 * 214.96832 * 24 5 4 44 44 H 1.09000 * 117.49987 * 359.97438 * 24 5 4 45 45 H 1.08999 * 117.49826 * 252.50812 * 25 24 5 46 46 H 1.08993 * 117.50133 * 107.49115 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1319 0.0000 4 6 3.6025 0.6067 -0.0038 5 6 4.9022 1.3694 -0.0074 6 6 4.8691 2.7069 -0.7010 7 8 4.7491 3.7240 -0.0514 8 7 4.9728 2.7727 -2.0432 9 6 4.8272 4.0602 -2.7268 10 6 4.9942 3.8589 -4.2343 11 8 3.9174 3.0809 -4.7609 12 6 5.0968 5.2251 -4.9625 13 6 5.9064 4.8436 -6.2269 14 7 6.8792 3.8377 -5.7628 15 6 8.0763 3.5493 -6.3621 16 1 8.9300 3.2765 -5.7593 17 6 8.1924 3.6075 -7.7440 18 7 9.3832 3.6098 -8.3048 19 14 6.6589 3.6826 -8.8079 20 1 6.2323 5.0966 -8.9623 21 1 6.9547 3.1061 -10.1442 22 1 5.5705 2.9047 -8.1631 23 6 6.3517 3.1963 -4.5496 24 6 5.8058 1.2321 1.2197 25 6 6.1967 0.5588 -0.0974 26 8 3.4537 -0.7254 0.0021 27 7 2.2867 -1.0424 0.0041 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8878 -0.5178 30 1 -0.3634 -0.8922 -0.5099 31 1 2.0710 2.1742 0.0012 32 1 5.1476 1.9681 -2.5561 33 1 3.8383 4.4704 -2.5224 34 1 5.5890 4.7513 -2.3659 35 1 3.8364 2.2025 -4.3649 36 1 4.1091 5.6007 -5.2297 37 1 5.6384 5.9512 -4.3562 38 1 6.4239 5.7169 -6.6239 39 1 5.2490 4.4148 -6.9832 40 1 9.4644 3.6509 -9.2706 41 1 7.0410 3.3500 -3.7193 42 1 6.2117 2.1297 -4.7252 43 1 6.3763 2.1092 1.5253 44 1 5.4600 0.5903 2.0300 45 1 6.1083 -0.5261 -0.1536 46 1 7.0244 0.9928 -0.6583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716925309.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:37 Heat of formation + Delta-G solvation = 8.247054 kcal Electronic energy + Delta-G solvation = -29538.710905 eV Core-core repulsion = 25432.614790 eV Total energy + Delta-G solvation = -4106.096115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.03002 -41.47795 -40.24920 -37.89768 -36.91726 -35.81717 -35.43384 -34.28136 -32.58682 -31.78959 -30.11012 -29.62933 -27.96624 -26.10418 -24.72725 -24.32302 -23.40374 -22.85380 -22.10345 -21.37879 -20.60689 -19.29260 -18.94156 -18.68223 -18.03936 -17.59671 -17.27576 -16.98319 -16.62908 -16.02463 -15.88343 -15.63601 -15.46213 -15.18830 -14.76431 -14.50596 -14.31183 -14.23324 -14.09381 -13.97534 -13.86016 -13.48680 -13.42597 -13.23117 -12.92379 -12.73780 -12.61816 -12.46967 -12.26117 -12.21440 -12.08382 -11.97583 -11.79714 -11.54581 -11.08268 -11.02650 -10.98696 -10.81784 -10.28781 -10.25946 -8.85888 -8.24135 -5.65834 0.28846 1.12599 1.14793 1.29464 1.37088 1.48600 1.72717 2.20819 2.37728 2.56506 2.98847 3.13093 3.15855 3.17629 3.19268 3.44458 3.61785 3.66700 3.72249 3.74904 3.79667 4.00386 4.20026 4.36284 4.36979 4.46535 4.56442 4.63386 4.65513 4.66188 4.72919 4.80029 4.80494 4.83833 4.86454 4.90566 4.95446 5.03170 5.08437 5.16564 5.18879 5.21452 5.78453 6.09865 6.27696 6.69125 6.75139 6.97325 7.17615 7.47288 8.10688 8.95894 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.002934 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.215790 B = 9539.477770 C = 9901.033361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.019 3.981 3 C -0.226 4.226 4 C 0.017 3.983 5 C -0.107 4.107 6 C 0.568 3.432 7 O -0.556 6.556 8 N -0.710 5.710 9 C 0.117 3.883 10 C 0.121 3.879 11 O -0.555 6.555 12 C -0.106 4.106 13 C 0.106 3.894 14 N -0.623 5.623 15 C -0.240 4.240 16 H 0.053 0.947 17 C -0.022 4.022 18 N -0.954 5.954 19 Si 0.951 3.049 20 H -0.273 1.273 21 H -0.306 1.306 22 H -0.267 1.267 23 C 0.107 3.893 24 C -0.120 4.120 25 C -0.136 4.136 26 O 0.097 5.903 27 N -0.389 5.389 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.176 0.824 32 H 0.411 0.589 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.385 0.615 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.018 0.982 40 H 0.265 0.735 41 H 0.047 0.953 42 H 0.037 0.963 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.311 -5.195 20.142 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 C -0.247 4.247 4 C -0.047 4.047 5 C -0.111 4.111 6 C 0.352 3.648 7 O -0.433 6.433 8 N -0.362 5.362 9 C -0.007 4.007 10 C 0.080 3.920 11 O -0.362 6.362 12 C -0.145 4.145 13 C -0.019 4.019 14 N -0.350 5.350 15 C -0.369 4.369 16 H 0.071 0.929 17 C -0.218 4.218 18 N -0.599 5.599 19 Si 0.780 3.220 20 H -0.199 1.199 21 H -0.234 1.234 22 H -0.192 1.192 23 C -0.018 4.018 24 C -0.157 4.157 25 C -0.173 4.173 26 O 0.033 5.967 27 N -0.096 5.096 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.194 0.806 32 H 0.248 0.752 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.235 0.765 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.133 0.867 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.566 -5.268 20.057 26.542 hybrid contribution -0.028 -0.061 -1.007 1.009 sum -16.594 -5.329 19.050 25.820 Atomic orbital electron populations 1.20345 0.83690 1.04860 1.04591 1.24102 1.00536 0.88105 1.01206 1.22530 0.90981 1.01618 1.09582 1.22824 0.95575 0.83538 1.02743 1.19236 0.88552 0.94310 1.09034 1.19066 0.75378 0.88424 0.81881 1.90726 1.50039 1.36782 1.65775 1.45860 1.72139 1.11680 1.06515 1.21905 1.03544 0.85727 0.89536 1.22254 0.85706 0.93001 0.91075 1.86573 1.50996 1.31509 1.67104 1.22735 1.01427 0.94471 0.95839 1.22052 0.91331 0.91887 0.96589 1.44674 1.18825 1.41072 1.30434 1.18462 0.86432 1.42544 0.89479 0.92923 1.26017 0.98706 0.99075 0.98045 1.69897 1.23880 1.55182 1.10961 0.85787 0.80616 0.78488 0.77104 1.19918 1.23415 1.19227 1.22253 0.93800 0.95998 0.89737 1.23287 0.97641 1.03644 0.91166 1.23426 0.93009 1.00881 0.99991 1.84782 1.21693 1.22191 1.68082 1.73865 0.89515 1.24670 1.21588 0.88740 0.88325 0.90183 0.80624 0.75244 0.89395 0.90011 0.76542 0.88135 0.87790 0.93825 0.96400 0.92628 0.93533 0.94475 0.86704 0.86005 0.85415 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.47 71.24 0.75 -0.15 16 2 C 0.02 0.35 7.33 43.58 0.32 0.67 16 3 C -0.23 -4.17 10.60 22.40 0.24 -3.94 16 4 C 0.02 0.32 6.77 25.04 0.17 0.49 16 5 C -0.11 -1.78 2.39 -53.67 -0.13 -1.91 16 6 C 0.57 11.88 6.60 87.66 0.58 12.46 16 7 O -0.56 -15.35 17.02 -3.02 -0.05 -15.40 16 8 N -0.71 -13.46 5.13 -463.06 -2.37 -15.84 16 9 C 0.12 2.52 4.80 86.38 0.42 2.94 16 10 C 0.12 3.25 0.93 -9.60 -0.01 3.24 16 11 O -0.55 -14.72 13.10 -148.98 -1.95 -16.67 16 12 C -0.11 -3.10 6.26 31.99 0.20 -2.90 16 13 C 0.11 4.33 4.93 86.85 0.43 4.76 16 14 N -0.62 -28.69 2.99 -692.00 -2.07 -30.76 16 15 C -0.24 -13.56 10.54 84.03 0.89 -12.67 16 16 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 17 C -0.02 -1.31 5.47 84.86 0.46 -0.84 16 18 N -0.95 -59.60 13.97 21.65 0.30 -59.29 16 19 Si 0.95 47.33 24.59 68.60 1.69 49.02 16 20 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.31 -15.29 7.11 99.48 0.71 -14.59 16 22 H -0.27 -13.05 6.66 99.48 0.66 -12.39 16 23 C 0.11 3.70 5.76 86.73 0.50 4.20 16 24 C -0.12 -1.61 9.87 30.59 0.30 -1.31 16 25 C -0.14 -1.69 9.88 30.59 0.30 -1.38 16 26 O 0.10 2.00 10.96 71.61 0.79 2.78 16 27 N -0.39 -8.69 12.07 -49.56 -0.60 -9.29 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.83 8.14 -2.38 -0.02 0.82 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.41 6.67 7.48 -92.71 -0.69 5.97 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 1.88 8.03 -2.39 -0.02 1.86 16 35 H 0.39 7.40 8.44 -74.06 -0.62 6.77 16 36 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.10 2.67 7.96 -2.38 -0.02 2.66 16 38 H 0.04 1.88 7.92 -2.39 -0.02 1.86 16 39 H 0.02 0.80 5.15 -2.39 -0.01 0.78 16 40 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 41 H 0.05 1.56 7.82 -2.39 -0.02 1.54 16 42 H 0.04 1.27 8.07 -2.39 -0.02 1.25 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.13 1.32 8.00 -2.39 -0.02 1.30 16 46 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -75.58 381.74 0.80 -74.78 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -0.34 Total: 17.02 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.41 Total: 3.65 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -4.74 Total: -115.18 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.22 Total: -29.29 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.69 Total: 49.02 kcal Total: -75.58 0.80 -74.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716925309.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.032 kcal (2) G-P(sol) polarization free energy of solvation -75.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds