Wall clock time and date at job start Tue Mar 31 2020 19:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40365 * 126.63973 * 2 1 4 4 C 1.35135 * 107.11128 * 179.97438 * 3 2 1 5 5 O 1.33936 * 108.76765 * 359.76813 * 4 3 2 6 6 C 1.34916 * 109.38336 * 0.37885 * 5 4 3 7 7 C 1.46655 * 125.98603 * 179.88326 * 6 5 4 8 8 O 1.21703 * 119.99810 * 179.69284 * 7 6 5 9 9 N 1.34777 * 120.00110 * 359.42139 * 7 6 5 10 10 C 1.47422 * 125.64727 * 359.96018 * 9 7 6 11 11 C 1.54693 * 104.93967 * 204.07616 * 10 9 7 12 12 C 1.55151 * 101.67742 * 323.27907 * 11 10 9 13 13 C 1.47020 * 125.64482 * 180.27761 * 9 7 6 14 14 H 1.08997 * 109.88840 * 59.48231 * 13 9 7 15 15 C 1.53002 * 109.88117 * 298.31419 * 13 9 7 16 16 N 1.46900 * 109.47119 * 56.45948 * 15 13 9 17 17 C 1.46898 * 110.99752 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.46800 * 179.97438 * 17 16 15 19 19 O 1.21292 * 119.99972 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99792 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99647 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00306 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99856 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99881 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99914 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47133 * 89.99767 * 25 23 21 27 27 H 1.48497 * 109.46732 * 209.99647 * 25 23 21 28 28 H 1.48498 * 109.47158 * 329.99866 * 25 23 21 29 29 H 1.08992 * 109.47402 * 270.02425 * 1 2 3 30 30 H 1.08997 * 109.47040 * 30.02974 * 1 2 3 31 31 H 1.09008 * 109.46633 * 150.02665 * 1 2 3 32 32 H 1.07992 * 126.44572 * 359.97438 * 3 2 1 33 33 H 1.07996 * 125.61645 * 180.02562 * 4 3 2 34 34 H 1.09000 * 110.36793 * 323.01257 * 10 9 7 35 35 H 1.09003 * 110.36527 * 85.33318 * 10 9 7 36 36 H 1.08998 * 111.10128 * 205.10921 * 11 10 9 37 37 H 1.08999 * 110.84809 * 81.33887 * 11 10 9 38 38 H 1.09000 * 110.72173 * 276.96891 * 12 11 10 39 39 H 1.08999 * 110.71854 * 153.70174 * 12 11 10 40 40 H 1.09000 * 109.46915 * 176.45832 * 15 13 9 41 41 H 1.09003 * 109.47435 * 296.45795 * 15 13 9 42 42 H 1.00902 * 111.00099 * 56.04443 * 16 15 13 43 43 H 1.08999 * 109.47327 * 299.99525 * 17 16 15 44 44 H 1.08995 * 109.47647 * 60.00127 * 17 16 15 45 45 H 0.96997 * 119.99895 * 0.02562 * 20 18 17 46 46 H 0.97000 * 119.99865 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6184 0.6746 0.0006 5 8 3.6006 -0.6647 0.0061 6 6 2.3221 -1.0955 0.0007 7 6 1.8844 -2.4952 0.0016 8 8 0.6969 -2.7615 0.0020 9 7 2.7973 -3.4867 -0.0034 10 6 4.2606 -3.3074 -0.0109 11 6 4.8193 -4.6131 -0.6240 12 6 3.8483 -5.6740 -0.0417 13 6 2.4987 -4.9263 -0.0089 14 1 1.9128 -5.1800 -0.8923 15 6 1.7262 -5.3023 1.2571 16 7 0.5088 -4.4852 1.3487 17 6 -0.2597 -4.8191 2.5553 18 6 -1.4981 -3.9624 2.6151 19 8 -1.7189 -3.1536 1.7387 20 7 -2.3607 -4.0957 3.6421 21 6 -3.4870 -3.3159 3.6968 22 1 -3.6832 -2.5951 2.9168 23 6 -4.3761 -3.4529 4.7558 24 7 -4.1376 -4.3302 5.7047 25 14 -5.9110 -2.3909 4.8300 26 1 -7.0246 -3.0808 4.1306 27 1 -6.2850 -2.1599 6.2485 28 1 -5.6438 -1.0878 4.1700 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5135 32 1 2.0306 2.1595 -0.0004 33 1 4.5046 1.2918 0.0011 34 1 4.5346 -2.4509 -0.6269 35 1 4.6322 -3.1790 1.0057 36 1 5.8416 -4.7959 -0.2932 37 1 4.7618 -4.5864 -1.7121 38 1 4.1527 -5.9647 0.9638 39 1 3.7912 -6.5444 -0.6952 40 1 1.4537 -6.3569 1.2167 41 1 2.3516 -5.1218 2.1315 42 1 -0.0574 -4.5856 0.5196 43 1 -0.5460 -5.8704 2.5244 44 1 0.3521 -4.6350 3.4384 45 1 -2.1842 -4.7428 4.3428 46 1 -4.7584 -4.4261 6.4437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723885888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:01 Heat of formation + Delta-G solvation = -26.446092 kcal Electronic energy + Delta-G solvation = -29929.221627 eV Core-core repulsion = 25821.621104 eV Total energy + Delta-G solvation = -4107.600523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.57411 -39.90302 -37.97938 -37.24653 -34.99140 -33.93019 -33.62277 -31.74672 -31.06596 -30.37419 -29.85568 -27.30377 -26.69914 -24.68451 -23.72028 -22.89530 -21.62588 -21.55930 -20.27496 -19.14088 -18.88148 -17.77087 -17.42395 -16.76561 -16.24278 -16.03446 -15.81534 -15.17452 -14.68117 -14.38209 -14.20730 -14.01720 -13.80454 -13.67539 -13.29859 -13.22260 -13.12985 -12.87431 -12.71878 -12.46056 -12.41939 -12.17597 -12.05849 -11.58298 -11.46555 -11.39883 -11.36217 -11.22984 -11.02679 -10.92154 -10.89277 -10.30409 -10.08670 -9.58506 -9.41842 -9.34744 -8.61714 -8.34724 -8.10751 -7.79537 -7.53662 -6.28137 -3.67616 1.29872 2.47163 2.76198 3.23630 3.26156 3.33324 3.40055 3.62628 4.12120 4.19240 4.33013 4.36179 4.62400 4.72593 4.84665 4.92382 5.02662 5.08665 5.23360 5.34289 5.36385 5.40348 5.50498 5.55110 5.62055 5.62750 5.67401 5.69597 5.72171 5.91397 5.92451 5.98973 6.12142 6.16357 6.18609 6.27111 6.40322 6.45037 6.51270 6.78949 7.02772 7.49931 7.67891 7.73563 8.05237 8.22685 8.58999 8.79401 9.33976 9.72372 10.26478 10.90428 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012485 B = 0.003445 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.105621 B = 8126.016768 C = 9953.745268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.088 4.088 3 C -0.222 4.222 4 C -0.025 4.025 5 O -0.167 6.167 6 C -0.071 4.071 7 C 0.603 3.397 8 O -0.432 6.432 9 N -0.611 5.611 10 C 0.102 3.898 11 C -0.132 4.132 12 C -0.126 4.126 13 C 0.145 3.855 14 H 0.073 0.927 15 C 0.047 3.953 16 N -0.641 5.641 17 C 0.047 3.953 18 C 0.445 3.555 19 O -0.562 6.562 20 N -0.574 5.574 21 C -0.292 4.292 22 H 0.101 0.899 23 C 0.018 3.982 24 N -0.907 5.907 25 Si 0.927 3.073 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.270 1.270 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.151 0.849 33 H 0.204 0.796 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.358 0.642 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.390 0.610 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.503 1.279 -11.718 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.242 4.242 4 C -0.095 4.095 5 O -0.063 6.063 6 C -0.123 4.123 7 C 0.390 3.610 8 O -0.301 6.301 9 N -0.348 5.348 10 C -0.021 4.021 11 C -0.170 4.170 12 C -0.164 4.164 13 C 0.041 3.959 14 H 0.091 0.909 15 C -0.084 4.084 16 N -0.278 5.278 17 C -0.086 4.086 18 C 0.230 3.770 19 O -0.443 6.443 20 N -0.212 5.212 21 C -0.421 4.421 22 H 0.119 0.881 23 C -0.182 4.182 24 N -0.550 5.550 25 Si 0.755 3.245 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.195 1.195 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.169 0.831 33 H 0.220 0.780 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.181 0.819 43 H 0.053 0.947 44 H 0.095 0.905 45 H 0.222 0.778 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.016 2.053 -11.876 24.226 hybrid contribution -0.885 -0.468 0.632 1.183 sum 20.131 1.585 -11.244 23.113 Atomic orbital electron populations 1.20406 0.87613 1.03142 1.03693 1.20708 0.97969 0.90790 0.99563 1.21737 0.92588 1.00100 1.09746 1.24214 0.99649 0.81213 1.04407 1.84126 1.28856 1.22138 1.71174 1.22096 0.80905 0.95099 1.14187 1.16067 0.85370 0.80731 0.78838 1.91021 1.13999 1.80147 1.44945 1.48125 1.05859 1.05326 1.75503 1.22263 0.80704 0.98269 1.00896 1.22727 0.99103 0.94351 1.00832 1.22665 0.93609 0.97907 1.02265 1.21550 0.95835 0.80423 0.98095 0.90891 1.22459 0.93766 0.94764 0.97434 1.60602 1.07348 1.54714 1.05129 1.21700 0.95210 0.96640 0.95003 1.19857 0.85294 0.87257 0.84585 1.90569 1.76088 1.38379 1.39294 1.41877 1.20726 1.36506 1.22089 1.19680 0.97811 1.16712 1.07928 0.88078 1.25212 0.99624 0.97767 0.95608 1.69620 1.38036 1.35369 1.11926 0.85897 0.81315 0.80158 0.77142 1.20584 1.21083 1.19497 0.90246 0.92364 0.89051 0.83135 0.77966 0.90198 0.91816 0.89960 0.90721 0.90268 0.90033 0.95124 0.91336 0.81856 0.94735 0.90523 0.77751 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.82 36.01 0.35 -1.18 16 2 C -0.09 -1.36 6.20 -104.43 -0.65 -2.01 16 3 C -0.22 -2.69 10.83 -39.89 -0.43 -3.12 16 4 C -0.03 -0.26 12.08 29.63 0.36 0.10 16 5 O -0.17 -2.11 7.86 4.98 0.04 -2.07 16 6 C -0.07 -1.11 6.93 -36.80 -0.25 -1.37 16 7 C 0.60 10.07 7.39 -12.86 -0.10 9.97 16 8 O -0.43 -8.61 10.69 5.19 0.06 -8.56 16 9 N -0.61 -8.05 3.07 -164.69 -0.50 -8.56 16 10 C 0.10 1.00 6.15 -2.65 -0.02 0.98 16 11 C -0.13 -0.93 7.07 -24.70 -0.17 -1.10 16 12 C -0.13 -0.97 6.48 -24.90 -0.16 -1.13 16 13 C 0.14 1.67 3.29 -66.95 -0.22 1.45 16 14 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 15 C 0.05 0.63 5.27 -3.82 -0.02 0.60 16 16 N -0.64 -11.61 2.93 -115.06 -0.34 -11.95 16 17 C 0.05 0.93 6.17 -4.97 -0.03 0.89 16 18 C 0.45 11.23 7.82 -10.98 -0.09 11.14 16 19 O -0.56 -15.97 15.59 5.55 0.09 -15.88 16 20 N -0.57 -15.38 5.29 -10.96 -0.06 -15.44 16 21 C -0.29 -8.50 9.68 -14.93 -0.14 -8.64 16 22 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 23 C 0.02 0.51 5.50 -17.47 -0.10 0.42 16 24 N -0.91 -25.75 13.05 55.50 0.72 -25.03 16 25 Si 0.93 21.95 29.55 -169.99 -5.02 16.93 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 28 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.73 6.45 -51.92 -0.33 1.39 16 32 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.20 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.08 0.78 6.23 -51.93 -0.32 0.46 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.57 7.79 -51.93 -0.40 0.17 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 42 H 0.36 7.07 7.08 -39.29 -0.28 6.79 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.39 10.06 7.90 -40.82 -0.32 9.74 16 46 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 376.53 15.07 5.67 5.67 Total: -1.00 -34.69 376.53 -7.68 -42.36 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -6.67 Total: 15.50 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.67 Total: 7.01 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.18 Total: -60.97 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: 0.18 Total: -26.51 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.69 -7.68 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723885888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.918 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds