Wall clock time and date at job start Tue Mar 31 2020 19:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40365 * 126.63973 * 2 1 4 4 C 1.35135 * 107.11128 * 179.97438 * 3 2 1 5 5 O 1.33936 * 108.76765 * 359.76813 * 4 3 2 6 6 C 1.34916 * 109.38336 * 0.37885 * 5 4 3 7 7 C 1.46655 * 125.98603 * 179.88326 * 6 5 4 8 8 O 1.21703 * 119.99810 * 179.69284 * 7 6 5 9 9 N 1.34777 * 120.00110 * 359.42139 * 7 6 5 10 10 C 1.47422 * 125.64727 * 359.96018 * 9 7 6 11 11 C 1.54693 * 104.93967 * 204.07616 * 10 9 7 12 12 C 1.55151 * 101.67742 * 323.27907 * 11 10 9 13 13 C 1.47020 * 125.64482 * 180.27761 * 9 7 6 14 14 H 1.08997 * 109.88840 * 59.48231 * 13 9 7 15 15 C 1.53002 * 109.88117 * 298.31419 * 13 9 7 16 16 N 1.46900 * 109.47119 * 56.45948 * 15 13 9 17 17 C 1.46898 * 110.99752 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.46800 * 179.97438 * 17 16 15 19 19 O 1.21292 * 119.99972 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99792 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99647 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00306 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99856 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99881 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99914 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47133 * 89.99767 * 25 23 21 27 27 H 1.48497 * 109.46732 * 209.99647 * 25 23 21 28 28 H 1.48498 * 109.47158 * 329.99866 * 25 23 21 29 29 H 1.08992 * 109.47402 * 270.02425 * 1 2 3 30 30 H 1.08997 * 109.47040 * 30.02974 * 1 2 3 31 31 H 1.09008 * 109.46633 * 150.02665 * 1 2 3 32 32 H 1.07992 * 126.44572 * 359.97438 * 3 2 1 33 33 H 1.07996 * 125.61645 * 180.02562 * 4 3 2 34 34 H 1.09000 * 110.36793 * 323.01257 * 10 9 7 35 35 H 1.09003 * 110.36527 * 85.33318 * 10 9 7 36 36 H 1.08998 * 111.10128 * 205.10921 * 11 10 9 37 37 H 1.08999 * 110.84809 * 81.33887 * 11 10 9 38 38 H 1.09000 * 110.72173 * 276.96891 * 12 11 10 39 39 H 1.08999 * 110.71854 * 153.70174 * 12 11 10 40 40 H 1.09000 * 109.46915 * 176.45832 * 15 13 9 41 41 H 1.09003 * 109.47435 * 296.45795 * 15 13 9 42 42 H 1.00902 * 111.00099 * 56.04443 * 16 15 13 43 43 H 1.08999 * 109.47327 * 299.99525 * 17 16 15 44 44 H 1.08995 * 109.47647 * 60.00127 * 17 16 15 45 45 H 0.96997 * 119.99895 * 0.02562 * 20 18 17 46 46 H 0.97000 * 119.99865 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6184 0.6746 0.0006 5 8 3.6006 -0.6647 0.0061 6 6 2.3221 -1.0955 0.0007 7 6 1.8844 -2.4952 0.0016 8 8 0.6969 -2.7615 0.0020 9 7 2.7973 -3.4867 -0.0034 10 6 4.2606 -3.3074 -0.0109 11 6 4.8193 -4.6131 -0.6240 12 6 3.8483 -5.6740 -0.0417 13 6 2.4987 -4.9263 -0.0089 14 1 1.9128 -5.1800 -0.8923 15 6 1.7262 -5.3023 1.2571 16 7 0.5088 -4.4852 1.3487 17 6 -0.2597 -4.8191 2.5553 18 6 -1.4981 -3.9624 2.6151 19 8 -1.7189 -3.1536 1.7387 20 7 -2.3607 -4.0957 3.6421 21 6 -3.4870 -3.3159 3.6968 22 1 -3.6832 -2.5951 2.9168 23 6 -4.3761 -3.4529 4.7558 24 7 -4.1376 -4.3302 5.7047 25 14 -5.9110 -2.3909 4.8300 26 1 -7.0246 -3.0808 4.1306 27 1 -6.2850 -2.1599 6.2485 28 1 -5.6438 -1.0878 4.1700 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5135 32 1 2.0306 2.1595 -0.0004 33 1 4.5046 1.2918 0.0011 34 1 4.5346 -2.4509 -0.6269 35 1 4.6322 -3.1790 1.0057 36 1 5.8416 -4.7959 -0.2932 37 1 4.7618 -4.5864 -1.7121 38 1 4.1527 -5.9647 0.9638 39 1 3.7912 -6.5444 -0.6952 40 1 1.4537 -6.3569 1.2167 41 1 2.3516 -5.1218 2.1315 42 1 -0.0574 -4.5856 0.5196 43 1 -0.5460 -5.8704 2.5244 44 1 0.3521 -4.6350 3.4384 45 1 -2.1842 -4.7428 4.3428 46 1 -4.7584 -4.4261 6.4437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723885888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:00 Heat of formation + Delta-G solvation = -51.016636 kcal Electronic energy + Delta-G solvation = -29930.287086 eV Core-core repulsion = 25821.621104 eV Total energy + Delta-G solvation = -4108.665981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.57697 -40.92885 -39.96912 -38.33789 -36.47287 -35.67256 -35.01144 -33.22136 -32.70998 -31.41892 -30.90233 -28.51162 -28.25057 -26.32261 -24.94934 -24.12869 -22.58234 -22.34310 -21.31804 -20.94065 -20.04407 -19.85494 -18.54394 -17.80593 -17.66465 -17.21563 -16.91219 -16.68513 -16.32606 -15.96089 -15.83283 -15.12279 -15.05641 -14.93000 -14.71079 -14.54342 -14.09329 -14.02401 -13.95601 -13.77312 -13.56573 -13.48525 -13.35263 -13.32295 -13.00950 -12.82881 -12.59256 -12.47197 -12.40791 -12.14347 -12.01204 -11.90094 -11.56984 -11.46879 -10.68234 -10.61096 -10.22093 -9.96521 -9.70272 -9.36022 -8.86442 -8.44660 -5.92480 0.22948 1.36935 1.38736 1.49173 1.52584 1.75636 2.12056 2.28267 2.29953 2.45049 3.01274 3.22288 3.54514 3.62877 3.80674 3.87424 3.95779 3.96451 4.06490 4.27132 4.31321 4.37234 4.50134 4.55423 4.58145 4.62338 4.64569 4.66798 4.74597 4.75396 4.82475 4.92904 5.00791 5.12173 5.14250 5.16266 5.29417 5.39700 5.41482 5.48217 5.60738 5.95399 6.00513 6.22460 6.59376 6.65317 6.67102 7.16754 7.42879 7.61031 8.19371 8.73529 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012485 B = 0.003445 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.105621 B = 8126.016768 C = 9953.745268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.113 4.113 3 C -0.239 4.239 4 C 0.004 3.996 5 O -0.162 6.162 6 C -0.097 4.097 7 C 0.591 3.409 8 O -0.481 6.481 9 N -0.610 5.610 10 C 0.095 3.905 11 C -0.120 4.120 12 C -0.115 4.115 13 C 0.139 3.861 14 H 0.063 0.937 15 C 0.048 3.952 16 N -0.655 5.655 17 C 0.062 3.938 18 C 0.438 3.562 19 O -0.599 6.599 20 N -0.581 5.581 21 C -0.328 4.328 22 H 0.075 0.925 23 C -0.016 4.016 24 N -0.925 5.925 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.269 1.269 28 H -0.275 1.275 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.174 0.826 33 H 0.259 0.741 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.346 0.654 43 H 0.057 0.943 44 H 0.089 0.911 45 H 0.393 0.607 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.386 1.227 -11.680 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C -0.257 4.257 4 C -0.065 4.065 5 O -0.058 6.058 6 C -0.149 4.149 7 C 0.379 3.621 8 O -0.355 6.355 9 N -0.346 5.346 10 C -0.027 4.027 11 C -0.157 4.157 12 C -0.153 4.153 13 C 0.035 3.965 14 H 0.081 0.919 15 C -0.082 4.082 16 N -0.291 5.291 17 C -0.070 4.070 18 C 0.225 3.775 19 O -0.483 6.483 20 N -0.220 5.220 21 C -0.458 4.458 22 H 0.093 0.907 23 C -0.215 4.215 24 N -0.566 5.566 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.200 1.200 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.192 0.808 33 H 0.274 0.726 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.167 0.833 43 H 0.074 0.926 44 H 0.107 0.893 45 H 0.227 0.773 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.970 1.955 -11.822 26.798 hybrid contribution -1.683 -0.405 0.593 1.830 sum 22.286 1.549 -11.229 25.003 Atomic orbital electron populations 1.20186 0.89478 1.02766 1.01458 1.20860 0.97285 0.92779 1.00660 1.22019 0.92788 1.00245 1.10696 1.25260 1.00776 0.80263 1.00159 1.84136 1.27163 1.23550 1.70909 1.21957 0.82080 0.94832 1.16040 1.16402 0.85396 0.81838 0.78505 1.91001 1.15919 1.81075 1.47473 1.48245 1.07043 1.05434 1.73844 1.22496 0.78618 1.00145 1.01394 1.22730 1.00104 0.91968 1.00936 1.22673 0.90887 0.98163 1.03582 1.21752 0.97956 0.80168 0.96622 0.91925 1.22574 0.91844 0.95168 0.98634 1.60582 1.08117 1.56646 1.03706 1.21533 0.92782 0.96268 0.96435 1.20904 0.86322 0.87022 0.83268 1.90551 1.77196 1.40089 1.40494 1.41941 1.20740 1.36569 1.22738 1.19629 0.99820 1.17875 1.08488 0.90713 1.26022 1.02105 0.98711 0.94651 1.69684 1.39030 1.35819 1.12091 0.84942 0.77498 0.78121 0.77842 1.19561 1.19351 1.19968 0.93451 0.89955 0.92150 0.80848 0.72552 0.90165 0.91602 0.87116 0.90269 0.89178 0.87944 0.93160 0.91012 0.83266 0.92560 0.89314 0.77345 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.01 9.82 71.24 0.70 -2.31 16 2 C -0.11 -3.65 6.20 -19.74 -0.12 -3.77 16 3 C -0.24 -5.43 10.83 22.07 0.24 -5.19 16 4 C 0.00 0.07 12.08 67.10 0.81 0.88 16 5 O -0.16 -3.84 7.86 -5.11 -0.04 -3.88 16 6 C -0.10 -3.12 6.93 24.07 0.17 -2.95 16 7 C 0.59 20.77 7.39 86.44 0.64 21.41 16 8 O -0.48 -20.85 10.69 -4.36 -0.05 -20.90 16 9 N -0.61 -16.04 3.07 -793.16 -2.43 -18.47 16 10 C 0.10 1.70 6.15 86.78 0.53 2.23 16 11 C -0.12 -1.27 7.07 31.91 0.23 -1.05 16 12 C -0.11 -1.41 6.48 31.78 0.21 -1.20 16 13 C 0.14 3.09 3.29 45.34 0.15 3.24 16 14 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 15 C 0.05 1.25 5.27 86.30 0.45 1.70 16 16 N -0.65 -24.56 2.93 -517.93 -1.52 -26.08 16 17 C 0.06 2.49 6.17 85.56 0.53 3.02 16 18 C 0.44 23.20 7.82 87.66 0.69 23.89 16 19 O -0.60 -36.51 15.59 -3.07 -0.05 -36.56 16 20 N -0.58 -32.45 5.29 -306.97 -1.62 -34.07 16 21 C -0.33 -19.96 9.68 84.04 0.81 -19.15 16 22 H 0.07 4.86 7.16 -2.91 -0.02 4.83 16 23 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 24 N -0.92 -52.61 13.05 21.66 0.28 -52.33 16 25 Si 0.99 45.44 29.55 68.60 2.03 47.47 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.06 2.56 6.45 -2.38 -0.02 2.55 16 32 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.26 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.08 1.42 6.23 -2.39 -0.01 1.41 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 0.96 7.79 -2.39 -0.02 0.94 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 42 H 0.35 14.52 7.08 -89.69 -0.64 13.88 16 43 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.39 20.92 7.90 -92.71 -0.73 20.19 16 46 H 0.28 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -81.80 376.53 2.75 -79.05 By element: Atomic # 1 Polarization: 45.81 SS G_CDS: -0.35 Total: 45.47 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 6.49 Total: 20.31 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -5.29 Total: -130.96 kcal Atomic # 8 Polarization: -61.20 SS G_CDS: -0.13 Total: -61.34 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -81.80 2.75 -79.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723885888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.030 kcal (2) G-P(sol) polarization free energy of solvation -81.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds