Wall clock time and date at job start Tue Mar 31 2020 18:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35455 * 126.77701 * 2 1 4 4 C 1.41375 * 103.98465 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.80231 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47450 * 124.99951 * 5 4 3 7 7 C 1.50697 * 109.47670 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99934 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00519 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00399 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.77079 * 328.53309 * 10 9 7 12 12 C 1.55063 * 110.86994 * 92.28785 * 10 9 7 13 13 O 1.44599 * 103.66842 * 81.64338 * 12 10 9 14 14 C 1.42846 * 106.73521 * 39.08822 * 13 12 10 15 15 C 1.52653 * 115.96585 * 202.47029 * 14 13 12 16 16 N 1.47224 * 87.78043 * 218.41234 * 15 14 13 17 17 C 1.36931 * 135.96376 * 206.38030 * 16 15 14 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72312 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 C 1.47220 * 88.06760 * 26.63433 * 16 15 14 26 26 C 1.53317 * 108.32613 * 334.30564 * 14 13 12 27 27 N 1.30173 * 106.39847 * 0.26162 * 4 3 2 28 28 O 1.20923 * 111.60204 * 359.53797 * 27 4 3 29 29 H 1.09007 * 109.47369 * 90.00133 * 1 2 3 30 30 H 1.09003 * 109.47352 * 209.99377 * 1 2 3 31 31 H 1.08998 * 109.47289 * 329.99683 * 1 2 3 32 32 H 1.07997 * 128.00561 * 0.05504 * 3 2 1 33 33 H 1.09003 * 109.47366 * 5.00269 * 5 4 3 34 34 H 1.09005 * 109.47528 * 245.00184 * 5 4 3 35 35 H 1.09002 * 109.47295 * 60.00029 * 6 5 4 36 36 H 1.09005 * 109.46946 * 300.00590 * 6 5 4 37 37 H 0.97003 * 119.99666 * 359.97438 * 9 7 6 38 38 H 1.09000 * 110.58523 * 200.18961 * 12 10 9 39 39 H 1.09004 * 110.58359 * 323.09383 * 12 10 9 40 40 H 1.09002 * 113.49461 * 103.68038 * 15 14 13 41 41 H 1.08998 * 113.55945 * 333.15309 * 15 14 13 42 42 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 43 43 H 1.09001 * 113.49518 * 88.09122 * 25 16 15 44 44 H 1.08998 * 113.50705 * 218.63960 * 25 16 15 45 45 H 1.09002 * 110.56619 * 120.19354 * 26 14 13 46 46 H 1.08997 * 110.56176 * 242.89646 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6213 0.5373 -0.0006 5 6 4.9210 1.3000 -0.0003 6 6 5.7799 0.8438 1.1808 7 6 7.0793 1.6069 1.1815 8 8 7.2973 2.4339 0.3216 9 7 7.9998 1.3697 2.1370 10 6 9.2632 2.1111 2.1373 11 1 9.5645 2.3620 1.1202 12 6 9.1565 3.3840 3.0164 13 8 9.3658 2.8904 4.3593 14 6 10.3864 1.8943 4.2770 15 6 10.4177 0.8740 5.4121 16 7 11.8873 0.9347 5.3494 17 6 12.9214 0.0917 5.6578 18 1 12.7165 -0.8918 6.0543 19 6 14.2329 0.4990 5.4551 20 7 14.4825 1.6973 4.9715 21 14 15.6434 -0.6539 5.8686 22 1 15.1000 -1.9323 6.3938 23 1 16.4403 -0.9200 4.6442 24 1 16.5109 -0.0256 6.8971 25 6 11.7585 2.3008 4.8160 26 6 10.3747 1.3080 2.8604 27 7 3.4764 -0.7563 -0.0066 28 8 2.3095 -1.0736 -0.0006 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 2.0345 2.1271 0.0008 33 1 4.7163 2.3668 0.0900 34 1 5.4541 1.1100 -0.9320 35 1 5.9847 -0.2230 1.0905 36 1 5.2468 1.0338 2.1124 37 1 7.8256 0.7079 2.8245 38 1 9.9312 4.1019 2.7469 39 1 8.1675 3.8327 2.9227 40 1 10.0104 -0.0980 5.1339 41 1 10.0066 1.2513 6.3484 42 1 15.3990 1.9820 4.8301 43 1 11.7119 3.0669 5.5899 44 1 12.4826 2.5326 4.0350 45 1 11.3376 1.4635 2.3738 46 1 10.1275 0.2468 2.8873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724884301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:37 Heat of formation + Delta-G solvation = 36.036139 kcal Electronic energy + Delta-G solvation = -28162.022173 eV Core-core repulsion = 24057.131084 eV Total energy + Delta-G solvation = -4104.891090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.24192 -40.40927 -39.26886 -36.46592 -35.59573 -34.31343 -33.91701 -32.13993 -31.93788 -30.23863 -28.23277 -28.14763 -25.87132 -25.65514 -24.74122 -23.37072 -22.18127 -21.54903 -20.51038 -19.94055 -18.82468 -17.99300 -17.69436 -17.07378 -16.90076 -16.46455 -15.82242 -15.31806 -15.06461 -14.93849 -14.69300 -14.37691 -14.16874 -13.78903 -13.76051 -13.71021 -13.54811 -13.12927 -12.87459 -12.62694 -12.51359 -12.44900 -12.09196 -11.85438 -11.40887 -11.39532 -11.20397 -11.08149 -10.94497 -10.84179 -10.73898 -10.57887 -10.37498 -10.06327 -9.88457 -9.65762 -9.57762 -9.17174 -8.86572 -8.63281 -6.95606 -5.82393 -3.15693 1.12069 1.88256 2.53079 2.75783 3.07371 3.35978 3.41062 3.43983 3.85207 4.06426 4.20364 4.47048 4.54606 4.58984 4.70666 4.76578 4.81953 4.88236 4.90381 5.04731 5.08689 5.17981 5.22268 5.26457 5.29751 5.33568 5.38752 5.50361 5.57525 5.62223 5.66661 5.81196 5.85568 5.89198 6.15084 6.28494 6.35480 6.50223 6.55426 6.61332 6.94399 7.16122 7.43143 7.46808 7.60688 7.90820 7.96039 8.13076 8.97660 9.64036 10.56250 11.35129 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.001900 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.498573 B =14733.550852 C =15220.017562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.034 4.034 3 C -0.232 4.232 4 C 0.022 3.978 5 C -0.024 4.024 6 C -0.137 4.137 7 C 0.516 3.484 8 O -0.545 6.545 9 N -0.712 5.712 10 C 0.107 3.893 11 H 0.105 0.895 12 C 0.041 3.959 13 O -0.363 6.363 14 C 0.043 3.957 15 C 0.128 3.872 16 N -0.602 5.602 17 C -0.217 4.217 18 H 0.083 0.917 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.914 3.086 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.148 3.852 26 C -0.115 4.115 27 N -0.363 5.363 28 O 0.098 5.902 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.171 0.829 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.404 0.596 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.254 0.746 43 H 0.032 0.968 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.064 -0.378 -10.622 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.253 4.253 4 C -0.137 4.137 5 C -0.063 4.063 6 C -0.177 4.177 7 C 0.302 3.698 8 O -0.423 6.423 9 N -0.363 5.363 10 C 0.001 3.999 11 H 0.123 0.877 12 C -0.037 4.037 13 O -0.281 6.281 14 C 0.002 3.998 15 C 0.002 3.998 16 N -0.330 5.330 17 C -0.344 4.344 18 H 0.101 0.899 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.744 3.256 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.021 3.979 26 C -0.153 4.153 27 N -0.067 5.067 28 O 0.031 5.969 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.189 0.811 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.239 0.761 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.795 -0.864 -11.022 28.065 hybrid contribution 0.546 -0.042 0.613 0.822 sum -25.249 -0.906 -10.409 27.326 Atomic orbital electron populations 1.20344 0.84024 1.04716 1.04122 1.24534 0.96434 0.86268 1.02555 1.22460 0.91319 1.01076 1.10476 1.23609 0.97430 0.90067 1.02555 1.19720 0.88317 0.98919 0.99317 1.21614 0.93750 1.01766 1.00597 1.20550 0.85279 0.82945 0.81018 1.90703 1.79100 1.34968 1.37539 1.45989 1.17652 1.42379 1.30321 1.22638 0.83503 0.92559 1.01151 0.87682 1.23883 1.01606 0.95330 0.82872 1.88750 1.57409 1.55492 1.26401 1.23906 0.90580 0.90230 0.95072 1.22424 0.87335 0.95115 0.94966 1.45315 0.99360 1.12861 1.75453 1.18935 0.83644 0.94828 1.36985 0.89882 1.24815 0.97069 0.96982 1.01505 1.69841 1.18837 1.18038 1.49769 0.86014 0.82274 0.79650 0.77627 1.20387 1.21629 1.21666 1.22518 0.90649 0.88171 0.96513 1.22668 0.98567 1.00052 0.94009 1.73851 0.96833 1.16349 1.19695 1.84832 1.11330 1.33182 1.67517 0.89401 0.89780 0.89005 0.81117 0.88674 0.88975 0.88263 0.88581 0.76121 0.91200 0.89522 0.93881 0.94180 0.93583 0.95011 0.90778 0.88571 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 36.00 0.38 0.17 16 2 C -0.03 -0.24 7.49 -35.30 -0.26 -0.50 16 3 C -0.23 -1.72 11.05 -39.38 -0.44 -2.15 16 4 C 0.02 0.21 6.59 -82.10 -0.54 -0.33 16 5 C -0.02 -0.22 5.10 -27.89 -0.14 -0.37 16 6 C -0.14 -1.26 5.67 -27.89 -0.16 -1.41 16 7 C 0.52 6.20 7.83 -10.99 -0.09 6.11 16 8 O -0.55 -8.27 15.62 5.55 0.09 -8.18 16 9 N -0.71 -8.52 5.15 -51.72 -0.27 -8.78 16 10 C 0.11 1.49 3.51 -65.77 -0.23 1.25 16 11 H 0.11 1.49 7.54 -51.93 -0.39 1.10 16 12 C 0.04 0.61 7.42 38.25 0.28 0.89 16 13 O -0.36 -6.45 11.32 -35.23 -0.40 -6.85 16 14 C 0.04 0.81 1.66 -90.68 -0.15 0.66 16 15 C 0.13 2.65 8.20 -8.03 -0.07 2.59 16 16 N -0.60 -15.33 3.74 -184.61 -0.69 -16.02 16 17 C -0.22 -6.00 10.74 -15.06 -0.16 -6.17 16 18 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.00 11.51 55.49 0.64 -26.36 16 21 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.15 3.51 6.92 -7.90 -0.05 3.46 16 26 C -0.11 -1.87 6.11 -25.50 -0.16 -2.03 16 27 N -0.36 -4.02 12.06 33.42 0.40 -3.62 16 28 O 0.10 0.94 11.20 17.18 0.19 1.13 16 29 H 0.09 0.14 8.14 -51.92 -0.42 -0.28 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 4.23 8.63 -40.82 -0.35 3.88 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.04 0.81 7.91 -51.93 -0.41 0.40 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.91 6.93 -51.93 -0.36 1.55 16 45 H 0.10 1.70 7.82 -51.93 -0.41 1.29 16 46 H 0.08 1.29 7.70 -51.93 -0.40 0.89 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -34.00 385.92 -8.06 -42.07 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.94 Total: 2.02 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.88 Total: 1.90 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.08 Total: -54.79 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.12 Total: -13.89 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.00 -8.06 -42.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724884301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.101 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds