Wall clock time and date at job start Tue Mar 31 2020 18:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35455 * 126.77701 * 2 1 4 4 C 1.41375 * 103.98465 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.80231 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47450 * 124.99951 * 5 4 3 7 7 C 1.50697 * 109.47670 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99934 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00519 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00399 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.77079 * 328.53309 * 10 9 7 12 12 C 1.55063 * 110.86994 * 92.28785 * 10 9 7 13 13 O 1.44599 * 103.66842 * 81.64338 * 12 10 9 14 14 C 1.42846 * 106.73521 * 39.08822 * 13 12 10 15 15 C 1.52653 * 115.96585 * 202.47029 * 14 13 12 16 16 N 1.47224 * 87.78043 * 218.41234 * 15 14 13 17 17 C 1.36931 * 135.96376 * 206.38030 * 16 15 14 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72312 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 C 1.47220 * 88.06760 * 26.63433 * 16 15 14 26 26 C 1.53317 * 108.32613 * 334.30564 * 14 13 12 27 27 N 1.30173 * 106.39847 * 0.26162 * 4 3 2 28 28 O 1.20923 * 111.60204 * 359.53797 * 27 4 3 29 29 H 1.09007 * 109.47369 * 90.00133 * 1 2 3 30 30 H 1.09003 * 109.47352 * 209.99377 * 1 2 3 31 31 H 1.08998 * 109.47289 * 329.99683 * 1 2 3 32 32 H 1.07997 * 128.00561 * 0.05504 * 3 2 1 33 33 H 1.09003 * 109.47366 * 5.00269 * 5 4 3 34 34 H 1.09005 * 109.47528 * 245.00184 * 5 4 3 35 35 H 1.09002 * 109.47295 * 60.00029 * 6 5 4 36 36 H 1.09005 * 109.46946 * 300.00590 * 6 5 4 37 37 H 0.97003 * 119.99666 * 359.97438 * 9 7 6 38 38 H 1.09000 * 110.58523 * 200.18961 * 12 10 9 39 39 H 1.09004 * 110.58359 * 323.09383 * 12 10 9 40 40 H 1.09002 * 113.49461 * 103.68038 * 15 14 13 41 41 H 1.08998 * 113.55945 * 333.15309 * 15 14 13 42 42 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 43 43 H 1.09001 * 113.49518 * 88.09122 * 25 16 15 44 44 H 1.08998 * 113.50705 * 218.63960 * 25 16 15 45 45 H 1.09002 * 110.56619 * 120.19354 * 26 14 13 46 46 H 1.08997 * 110.56176 * 242.89646 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6213 0.5373 -0.0006 5 6 4.9210 1.3000 -0.0003 6 6 5.7799 0.8438 1.1808 7 6 7.0793 1.6069 1.1815 8 8 7.2973 2.4339 0.3216 9 7 7.9998 1.3697 2.1370 10 6 9.2632 2.1111 2.1373 11 1 9.5645 2.3620 1.1202 12 6 9.1565 3.3840 3.0164 13 8 9.3658 2.8904 4.3593 14 6 10.3864 1.8943 4.2770 15 6 10.4177 0.8740 5.4121 16 7 11.8873 0.9347 5.3494 17 6 12.9214 0.0917 5.6578 18 1 12.7165 -0.8918 6.0543 19 6 14.2329 0.4990 5.4551 20 7 14.4825 1.6973 4.9715 21 14 15.6434 -0.6539 5.8686 22 1 15.1000 -1.9323 6.3938 23 1 16.4403 -0.9200 4.6442 24 1 16.5109 -0.0256 6.8971 25 6 11.7585 2.3008 4.8160 26 6 10.3747 1.3080 2.8604 27 7 3.4764 -0.7563 -0.0066 28 8 2.3095 -1.0736 -0.0006 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 2.0345 2.1271 0.0008 33 1 4.7163 2.3668 0.0900 34 1 5.4541 1.1100 -0.9320 35 1 5.9847 -0.2230 1.0905 36 1 5.2468 1.0338 2.1124 37 1 7.8256 0.7079 2.8245 38 1 9.9312 4.1019 2.7469 39 1 8.1675 3.8327 2.9227 40 1 10.0104 -0.0980 5.1339 41 1 10.0066 1.2513 6.3484 42 1 15.3990 1.9820 4.8301 43 1 11.7119 3.0669 5.5899 44 1 12.4826 2.5326 4.0350 45 1 11.3376 1.4635 2.3738 46 1 10.1275 0.2468 2.8873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724884301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:36 Heat of formation + Delta-G solvation = 12.734298 kcal Electronic energy + Delta-G solvation = -28163.032617 eV Core-core repulsion = 24057.131084 eV Total energy + Delta-G solvation = -4105.901533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.87982 -41.74201 -40.49622 -38.03309 -36.33570 -35.49130 -34.38851 -34.18047 -32.75229 -31.42376 -29.90860 -28.61471 -27.50730 -26.65694 -26.35172 -24.02758 -23.96196 -22.69606 -21.52085 -20.58979 -20.45858 -18.79093 -18.68426 -18.40269 -17.90007 -17.77176 -17.08257 -16.67927 -16.59077 -16.03230 -15.91464 -15.59732 -15.43008 -14.88781 -14.76683 -14.45220 -14.20382 -14.18574 -13.92248 -13.86050 -13.56865 -13.31736 -13.08214 -13.07601 -12.89917 -12.74369 -12.60598 -12.47707 -12.46181 -12.36748 -12.15883 -11.89735 -11.83930 -11.51143 -11.10119 -10.92233 -10.84059 -10.53933 -10.21249 -9.98149 -8.99985 -7.94154 -5.29264 0.55943 1.26207 1.45815 1.46861 1.57139 1.57402 2.09355 2.29476 2.41873 2.87274 3.20005 3.25419 3.37859 3.49528 3.59245 3.63537 3.67717 3.79023 3.97794 4.07092 4.10486 4.20946 4.36323 4.43264 4.50628 4.61812 4.63898 4.68103 4.73080 4.76762 4.79119 4.85714 4.86948 4.92002 4.94600 4.96113 4.99597 5.13183 5.15762 5.19403 5.30288 5.43931 5.45327 5.84055 6.07222 6.50092 6.85699 7.18030 7.34984 7.55024 8.53692 9.23670 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.001900 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.498573 B =14733.550852 C =15220.017562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.029 4.029 3 C -0.241 4.241 4 C 0.012 3.988 5 C -0.021 4.021 6 C -0.126 4.126 7 C 0.519 3.481 8 O -0.577 6.577 9 N -0.707 5.707 10 C 0.121 3.879 11 H 0.106 0.894 12 C 0.038 3.962 13 O -0.369 6.369 14 C 0.072 3.928 15 C 0.129 3.871 16 N -0.628 5.628 17 C -0.227 4.227 18 H 0.092 0.908 19 C -0.066 4.066 20 N -0.953 5.953 21 Si 0.982 3.018 22 H -0.262 1.262 23 H -0.291 1.291 24 H -0.294 1.294 25 C 0.141 3.859 26 C -0.108 4.108 27 N -0.396 5.396 28 O 0.082 5.918 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.195 0.805 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.414 0.586 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.249 0.751 43 H 0.008 0.992 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.586 -1.264 -10.792 31.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 C -0.263 4.263 4 C -0.146 4.146 5 C -0.059 4.059 6 C -0.166 4.166 7 C 0.307 3.693 8 O -0.457 6.457 9 N -0.358 5.358 10 C 0.016 3.984 11 H 0.124 0.876 12 C -0.039 4.039 13 O -0.287 6.287 14 C 0.031 3.969 15 C 0.003 3.997 16 N -0.356 5.356 17 C -0.354 4.354 18 H 0.109 0.891 19 C -0.259 4.259 20 N -0.602 5.602 21 Si 0.810 3.190 22 H -0.186 1.186 23 H -0.218 1.218 24 H -0.222 1.222 25 C 0.015 3.985 26 C -0.146 4.146 27 N -0.103 5.103 28 O 0.017 5.983 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.212 0.788 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.251 0.749 38 H 0.090 0.910 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.026 0.974 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -28.379 -1.780 -11.177 30.552 hybrid contribution 1.218 0.295 0.668 1.420 sum -27.160 -1.485 -10.509 29.160 Atomic orbital electron populations 1.20577 0.81044 1.06086 1.05419 1.25294 0.97969 0.85335 1.00607 1.22798 0.90382 1.02403 1.10675 1.23789 0.98296 0.90000 1.02548 1.19662 0.88253 0.99288 0.98691 1.21561 0.92191 1.01367 1.01482 1.20971 0.85781 0.82419 0.80106 1.90697 1.79783 1.36485 1.38698 1.45911 1.16857 1.42324 1.30723 1.22359 0.83718 0.91764 1.00598 0.87614 1.24067 1.02633 0.95739 0.81481 1.88741 1.56331 1.55254 1.28388 1.23407 0.88025 0.89562 0.95932 1.22532 0.84653 0.96912 0.95587 1.45602 1.01232 1.13131 1.75614 1.19359 0.84578 0.95493 1.36000 0.89078 1.25683 0.99631 0.98565 1.02047 1.70034 1.18824 1.19933 1.51370 0.84954 0.78817 0.78264 0.76944 1.18591 1.21750 1.22163 1.22483 0.93262 0.87423 0.95368 1.22553 0.98802 1.00952 0.92287 1.73840 0.97787 1.17247 1.21428 1.84783 1.11308 1.34317 1.67872 0.87970 0.88925 0.87083 0.78819 0.88023 0.90309 0.87842 0.86735 0.74941 0.91039 0.87820 0.91253 0.94085 0.94191 0.97381 0.93567 0.90236 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 71.24 0.74 0.55 16 2 C -0.03 -0.34 7.49 25.04 0.19 -0.15 16 3 C -0.24 -3.12 11.05 22.40 0.25 -2.87 16 4 C 0.01 0.21 6.59 43.58 0.29 0.50 16 5 C -0.02 -0.35 5.10 29.85 0.15 -0.20 16 6 C -0.13 -2.07 5.67 29.85 0.17 -1.90 16 7 C 0.52 11.50 7.83 87.66 0.69 12.19 16 8 O -0.58 -16.72 15.62 -3.04 -0.05 -16.76 16 9 N -0.71 -15.30 5.15 -435.93 -2.24 -17.55 16 10 C 0.12 3.20 3.51 46.39 0.16 3.36 16 11 H 0.11 2.87 7.54 -2.39 -0.02 2.85 16 12 C 0.04 1.07 7.42 72.69 0.54 1.61 16 13 O -0.37 -12.66 11.32 -148.98 -1.69 -14.35 16 14 C 0.07 2.68 1.66 -10.83 -0.02 2.66 16 15 C 0.13 5.18 8.20 83.40 0.68 5.86 16 16 N -0.63 -32.21 3.74 -739.10 -2.76 -34.98 16 17 C -0.23 -12.57 10.74 84.04 0.90 -11.67 16 18 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 19 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 20 N -0.95 -57.69 11.51 21.65 0.25 -57.44 16 21 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 C 0.14 6.92 6.92 83.49 0.58 7.50 16 26 C -0.11 -3.40 6.11 31.39 0.19 -3.21 16 27 N -0.40 -8.53 12.06 -49.57 -0.60 -9.12 16 28 O 0.08 1.50 11.20 71.65 0.80 2.31 16 29 H 0.10 0.03 8.14 -2.38 -0.02 0.01 16 30 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.10 1.59 8.09 -2.39 -0.02 1.57 16 34 H 0.08 1.56 8.10 -2.38 -0.02 1.54 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.41 7.49 8.63 -92.71 -0.80 6.69 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 40 H 0.07 2.44 7.91 -2.39 -0.02 2.42 16 41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.05 2.50 6.93 -2.39 -0.02 2.48 16 45 H 0.08 2.82 7.82 -2.39 -0.02 2.80 16 46 H 0.10 2.79 7.70 -2.39 -0.02 2.77 16 Total: -1.00 -74.79 385.92 1.92 -72.88 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.20 Total: 16.66 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.98 Total: 10.95 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -5.36 Total: -119.09 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.93 Total: -28.81 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.79 1.92 -72.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724884301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.610 kcal (2) G-P(sol) polarization free energy of solvation -74.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds