Wall clock time and date at job start Tue Mar 31 2020 18:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35447 * 126.77934 * 2 1 4 4 C 1.41380 * 103.98719 * 180.09747 * 3 2 1 5 5 C 1.50697 * 126.80584 * 179.88852 * 4 3 2 6 6 C 1.52997 * 109.47222 * 124.70843 * 5 4 3 7 7 C 1.50701 * 109.47189 * 180.02562 * 6 5 4 8 8 O 1.21289 * 119.99617 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00269 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00032 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.97339 * 37.70127 * 10 9 7 12 12 C 1.55005 * 111.10743 * 273.54467 * 10 9 7 13 13 O 1.43867 * 105.17202 * 205.93023 * 12 10 9 14 14 C 1.42525 * 109.62936 * 24.31000 * 13 12 10 15 15 C 1.53273 * 115.51844 * 227.83538 * 14 13 12 16 16 N 1.47708 * 85.91121 * 219.80350 * 15 14 13 17 17 C 1.36945 * 134.43751 * 204.17310 * 16 15 14 18 18 H 1.08000 * 119.99549 * 179.97438 * 17 16 15 19 19 C 1.38809 * 119.99831 * 359.96856 * 17 16 15 20 20 N 1.31612 * 120.00136 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99732 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46920 * 90.00506 * 21 19 17 23 23 H 1.48501 * 109.47157 * 210.00248 * 21 19 17 24 24 H 1.48498 * 109.47184 * 329.99978 * 21 19 17 25 25 C 1.47710 * 91.12546 * 24.15465 * 16 15 14 26 26 C 1.53773 * 108.37764 * 358.12504 * 14 13 12 27 27 N 1.30177 * 106.39048 * 359.62426 * 4 3 2 28 28 O 1.20917 * 111.60834 * 0.24056 * 27 4 3 29 29 H 1.08996 * 109.47578 * 180.29930 * 1 2 3 30 30 H 1.08999 * 109.47072 * 300.30814 * 1 2 3 31 31 H 1.09004 * 109.47116 * 60.30515 * 1 2 3 32 32 H 1.07996 * 128.00863 * 359.95773 * 3 2 1 33 33 H 1.09005 * 109.47054 * 4.70466 * 5 4 3 34 34 H 1.09002 * 109.46923 * 244.70994 * 5 4 3 35 35 H 1.08996 * 109.47276 * 59.99959 * 6 5 4 36 36 H 1.09006 * 109.46593 * 299.99793 * 6 5 4 37 37 H 0.97005 * 119.99544 * 359.97438 * 9 7 6 38 38 H 1.09003 * 110.30159 * 87.01109 * 12 10 9 39 39 H 1.09000 * 110.38429 * 324.89538 * 12 10 9 40 40 H 1.09007 * 113.80079 * 334.04747 * 15 14 13 41 41 H 1.08993 * 113.80736 * 105.55452 * 15 14 13 42 42 H 0.97007 * 120.00351 * 179.97438 * 20 19 17 43 43 H 1.09001 * 113.80025 * 221.59517 * 25 16 15 44 44 H 1.08995 * 113.91219 * 90.10557 * 25 16 15 45 45 H 1.09007 * 110.92524 * 97.23079 * 26 14 13 46 46 H 1.09001 * 110.92171 * 220.86990 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0023 5 6 4.9211 1.2998 -0.0057 6 6 5.7792 0.8504 1.1786 7 6 7.0787 1.6135 1.1757 8 8 7.2972 2.4355 0.3110 9 7 7.9985 1.3818 2.1331 10 6 9.2620 2.1233 2.1299 11 1 9.1067 3.1574 1.8221 12 6 10.3161 1.4260 1.2324 13 8 11.5901 1.8269 1.7670 14 6 11.4426 2.1847 3.1387 15 6 12.0911 3.5117 3.5484 16 7 12.4888 2.8131 4.7876 17 6 12.8002 3.2174 6.0584 18 1 13.0667 2.4864 6.8075 19 6 12.7735 4.5665 6.3837 20 7 12.4483 5.4572 5.4709 21 14 13.1976 5.1179 8.1174 22 1 14.6564 5.3790 8.2107 23 1 12.4507 6.3607 8.4382 24 1 12.8226 4.0523 9.0813 25 6 12.4157 1.5039 4.1076 26 6 9.9584 2.0507 3.5178 27 7 3.4763 -0.7565 0.0047 28 8 2.3094 -1.0736 0.0062 29 1 -0.3634 -1.0276 0.0054 30 1 -0.3633 0.5186 0.8872 31 1 -0.3633 0.5091 -0.8927 32 1 2.0346 2.1270 -0.0006 33 1 4.7164 2.3671 0.0782 34 1 5.4547 1.1043 -0.9358 35 1 5.9839 -0.2168 1.0947 36 1 5.2455 1.0460 2.1088 37 1 7.8238 0.7241 2.8244 38 1 10.2162 1.7625 0.2005 39 1 10.2061 0.3430 1.2889 40 1 12.9318 3.8033 2.9187 41 1 11.3771 4.3194 3.7086 42 1 12.4292 6.4000 5.6983 43 1 11.9589 0.7196 4.7112 44 1 13.3524 1.1936 3.6446 45 1 9.7649 1.0928 4.0008 46 1 9.6433 2.8769 4.1551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724884303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:40 Heat of formation + Delta-G solvation = 33.068565 kcal Electronic energy + Delta-G solvation = -27996.031719 eV Core-core repulsion = 23891.011945 eV Total energy + Delta-G solvation = -4105.019773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.26495 -40.32929 -39.27824 -36.35063 -35.62523 -34.53839 -33.93431 -32.09223 -31.96503 -30.17132 -28.24778 -28.11117 -25.81826 -25.53506 -24.95374 -23.38838 -22.04896 -21.64579 -20.62899 -19.97370 -18.75357 -18.02121 -17.72338 -17.16156 -16.76437 -16.45881 -15.82615 -15.50673 -15.02292 -14.92668 -14.59118 -14.31497 -14.26080 -13.86704 -13.77202 -13.65240 -13.29588 -13.18751 -12.98859 -12.80308 -12.58575 -12.48872 -12.09547 -11.88012 -11.63022 -11.35542 -11.23578 -11.08210 -10.93094 -10.72580 -10.68855 -10.41247 -10.38550 -10.07209 -9.94672 -9.67750 -9.58675 -9.13899 -8.82525 -8.70450 -6.92292 -5.79522 -3.12453 1.09775 1.85856 2.49005 2.73891 2.97091 3.37642 3.42166 3.44459 3.82140 4.03602 4.22689 4.47198 4.50052 4.57240 4.66426 4.71551 4.81470 4.86284 4.87925 5.06138 5.10374 5.14482 5.18990 5.24380 5.25952 5.34394 5.36120 5.39476 5.53245 5.59112 5.64330 5.80206 5.91475 5.94185 6.11110 6.29872 6.35095 6.43380 6.58721 6.69516 7.03729 7.22113 7.35998 7.50243 7.70022 7.93460 7.94073 8.08252 9.01487 9.67333 10.55892 11.37745 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.001877 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.513937 B =14915.997459 C =15609.579601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.034 4.034 3 C -0.232 4.232 4 C 0.023 3.977 5 C -0.025 4.025 6 C -0.136 4.136 7 C 0.515 3.485 8 O -0.538 6.538 9 N -0.716 5.716 10 C 0.109 3.891 11 H 0.106 0.894 12 C 0.044 3.956 13 O -0.365 6.365 14 C 0.055 3.945 15 C 0.166 3.834 16 N -0.604 5.604 17 C -0.222 4.222 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.117 3.883 26 C -0.119 4.119 27 N -0.364 5.364 28 O 0.098 5.902 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.172 0.828 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.402 0.598 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.036 0.964 41 H 0.077 0.923 42 H 0.255 0.745 43 H 0.045 0.955 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.222 -11.476 -10.841 28.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.253 4.253 4 C -0.136 4.136 5 C -0.064 4.064 6 C -0.176 4.176 7 C 0.301 3.699 8 O -0.414 6.414 9 N -0.369 5.369 10 C 0.004 3.996 11 H 0.124 0.876 12 C -0.034 4.034 13 O -0.283 6.283 14 C 0.014 3.986 15 C 0.041 3.959 16 N -0.333 5.333 17 C -0.349 4.349 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.009 4.009 26 C -0.157 4.157 27 N -0.069 5.069 28 O 0.031 5.969 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.189 0.811 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.237 0.763 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.962 -11.667 -11.319 28.134 hybrid contribution -0.179 0.793 1.380 1.601 sum -23.142 -10.874 -9.940 27.433 Atomic orbital electron populations 1.20349 0.84010 1.04718 1.04170 1.24531 0.96435 0.86240 1.02538 1.22458 0.91322 1.01144 1.10422 1.23608 0.97424 0.90041 1.02518 1.19732 0.88326 0.99059 0.99265 1.21611 0.93689 1.01678 1.00654 1.20580 0.85149 0.82927 0.81235 1.90733 1.79247 1.34693 1.36751 1.45897 1.17599 1.42977 1.30387 1.22805 0.82798 0.97302 0.96658 0.87575 1.23653 0.83477 0.98179 0.98098 1.88406 1.28404 1.86223 1.25227 1.24217 0.94153 1.00075 0.80153 1.22491 0.96189 0.92089 0.85170 1.45681 1.80586 1.01043 1.05982 1.18970 1.40054 0.91556 0.84334 0.90095 1.24800 1.01989 0.95553 0.98045 1.69818 1.53681 1.00792 1.32346 0.86106 0.77970 0.78022 0.83566 1.21553 1.21614 1.20613 1.22842 0.96006 0.90742 0.91331 1.22865 0.93622 1.03842 0.95333 1.73834 0.96869 1.16343 1.19819 1.84832 1.11333 1.33203 1.67510 0.89872 0.89095 0.89141 0.81081 0.88581 0.88903 0.88256 0.88586 0.76292 0.89819 0.92582 0.94667 0.90444 0.93523 0.93647 0.93993 0.90506 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 10.45 36.01 0.38 0.18 16 2 C -0.03 -0.23 7.49 -35.30 -0.26 -0.49 16 3 C -0.23 -1.69 11.05 -39.38 -0.44 -2.13 16 4 C 0.02 0.21 6.59 -82.10 -0.54 -0.33 16 5 C -0.03 -0.23 5.10 -27.89 -0.14 -0.37 16 6 C -0.14 -1.17 5.67 -27.88 -0.16 -1.33 16 7 C 0.51 6.05 7.83 -10.99 -0.09 5.96 16 8 O -0.54 -8.32 15.73 5.55 0.09 -8.23 16 9 N -0.72 -8.01 5.24 -51.52 -0.27 -8.28 16 10 C 0.11 1.58 3.37 -65.57 -0.22 1.36 16 11 H 0.11 1.74 7.74 -51.93 -0.40 1.33 16 12 C 0.04 0.67 7.49 38.22 0.29 0.96 16 13 O -0.37 -6.90 11.14 -35.23 -0.39 -7.29 16 14 C 0.05 1.08 1.68 -90.05 -0.15 0.92 16 15 C 0.17 4.04 6.94 -3.24 -0.02 4.02 16 16 N -0.60 -15.56 3.67 -181.31 -0.67 -16.23 16 17 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 20 N -0.92 -27.17 11.39 55.49 0.63 -26.54 16 21 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.12 2.48 8.45 -3.25 -0.03 2.45 16 26 C -0.12 -1.92 5.96 -25.02 -0.15 -2.07 16 27 N -0.36 -3.88 12.06 33.42 0.40 -3.48 16 28 O 0.10 0.91 11.20 17.18 0.19 1.10 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.40 3.41 8.51 -40.82 -0.35 3.07 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 2.02 7.01 -51.93 -0.36 1.66 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.05 0.88 8.01 -51.93 -0.42 0.46 16 44 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.08 7.85 -51.92 -0.41 0.68 16 46 H 0.10 1.76 7.83 -51.93 -0.41 1.35 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -34.51 386.20 -7.97 -42.48 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.96 Total: 1.19 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.79 Total: 2.51 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.10 Total: -54.53 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.11 Total: -14.43 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.51 -7.97 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724884303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.545 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds