Wall clock time and date at job start Tue Mar 31 2020 18:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35447 * 126.77934 * 2 1 4 4 C 1.41380 * 103.98719 * 180.09747 * 3 2 1 5 5 C 1.50697 * 126.80584 * 179.88852 * 4 3 2 6 6 C 1.52997 * 109.47222 * 124.70843 * 5 4 3 7 7 C 1.50701 * 109.47189 * 180.02562 * 6 5 4 8 8 O 1.21289 * 119.99617 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00269 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00032 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.97339 * 37.70127 * 10 9 7 12 12 C 1.55005 * 111.10743 * 273.54467 * 10 9 7 13 13 O 1.43867 * 105.17202 * 205.93023 * 12 10 9 14 14 C 1.42525 * 109.62936 * 24.31000 * 13 12 10 15 15 C 1.53273 * 115.51844 * 227.83538 * 14 13 12 16 16 N 1.47708 * 85.91121 * 219.80350 * 15 14 13 17 17 C 1.36945 * 134.43751 * 204.17310 * 16 15 14 18 18 H 1.08000 * 119.99549 * 179.97438 * 17 16 15 19 19 C 1.38809 * 119.99831 * 359.96856 * 17 16 15 20 20 N 1.31612 * 120.00136 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99732 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46920 * 90.00506 * 21 19 17 23 23 H 1.48501 * 109.47157 * 210.00248 * 21 19 17 24 24 H 1.48498 * 109.47184 * 329.99978 * 21 19 17 25 25 C 1.47710 * 91.12546 * 24.15465 * 16 15 14 26 26 C 1.53773 * 108.37764 * 358.12504 * 14 13 12 27 27 N 1.30177 * 106.39048 * 359.62426 * 4 3 2 28 28 O 1.20917 * 111.60834 * 0.24056 * 27 4 3 29 29 H 1.08996 * 109.47578 * 180.29930 * 1 2 3 30 30 H 1.08999 * 109.47072 * 300.30814 * 1 2 3 31 31 H 1.09004 * 109.47116 * 60.30515 * 1 2 3 32 32 H 1.07996 * 128.00863 * 359.95773 * 3 2 1 33 33 H 1.09005 * 109.47054 * 4.70466 * 5 4 3 34 34 H 1.09002 * 109.46923 * 244.70994 * 5 4 3 35 35 H 1.08996 * 109.47276 * 59.99959 * 6 5 4 36 36 H 1.09006 * 109.46593 * 299.99793 * 6 5 4 37 37 H 0.97005 * 119.99544 * 359.97438 * 9 7 6 38 38 H 1.09003 * 110.30159 * 87.01109 * 12 10 9 39 39 H 1.09000 * 110.38429 * 324.89538 * 12 10 9 40 40 H 1.09007 * 113.80079 * 334.04747 * 15 14 13 41 41 H 1.08993 * 113.80736 * 105.55452 * 15 14 13 42 42 H 0.97007 * 120.00351 * 179.97438 * 20 19 17 43 43 H 1.09001 * 113.80025 * 221.59517 * 25 16 15 44 44 H 1.08995 * 113.91219 * 90.10557 * 25 16 15 45 45 H 1.09007 * 110.92524 * 97.23079 * 26 14 13 46 46 H 1.09001 * 110.92171 * 220.86990 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0023 5 6 4.9211 1.2998 -0.0057 6 6 5.7792 0.8504 1.1786 7 6 7.0787 1.6135 1.1757 8 8 7.2972 2.4355 0.3110 9 7 7.9985 1.3818 2.1331 10 6 9.2620 2.1233 2.1299 11 1 9.1067 3.1574 1.8221 12 6 10.3161 1.4260 1.2324 13 8 11.5901 1.8269 1.7670 14 6 11.4426 2.1847 3.1387 15 6 12.0911 3.5117 3.5484 16 7 12.4888 2.8131 4.7876 17 6 12.8002 3.2174 6.0584 18 1 13.0667 2.4864 6.8075 19 6 12.7735 4.5665 6.3837 20 7 12.4483 5.4572 5.4709 21 14 13.1976 5.1179 8.1174 22 1 14.6564 5.3790 8.2107 23 1 12.4507 6.3607 8.4382 24 1 12.8226 4.0523 9.0813 25 6 12.4157 1.5039 4.1076 26 6 9.9584 2.0507 3.5178 27 7 3.4763 -0.7565 0.0047 28 8 2.3094 -1.0736 0.0062 29 1 -0.3634 -1.0276 0.0054 30 1 -0.3633 0.5186 0.8872 31 1 -0.3633 0.5091 -0.8927 32 1 2.0346 2.1270 -0.0006 33 1 4.7164 2.3671 0.0782 34 1 5.4547 1.1043 -0.9358 35 1 5.9839 -0.2168 1.0947 36 1 5.2455 1.0460 2.1088 37 1 7.8238 0.7241 2.8244 38 1 10.2162 1.7625 0.2005 39 1 10.2061 0.3430 1.2889 40 1 12.9318 3.8033 2.9187 41 1 11.3771 4.3194 3.7086 42 1 12.4292 6.4000 5.6983 43 1 11.9589 0.7196 4.7112 44 1 13.3524 1.1936 3.6446 45 1 9.7649 1.0928 4.0008 46 1 9.6433 2.8769 4.1551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724884303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:39 Heat of formation + Delta-G solvation = 9.050729 kcal Electronic energy + Delta-G solvation = -27997.073210 eV Core-core repulsion = 23891.011945 eV Total energy + Delta-G solvation = -4106.061265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.88522 -41.64546 -40.53202 -37.95851 -36.36967 -35.71590 -34.39425 -34.14680 -32.76122 -31.37753 -29.87249 -28.61995 -27.38406 -26.78544 -26.43834 -24.00656 -23.87092 -22.79668 -21.67241 -20.60200 -20.37850 -18.78877 -18.69493 -18.43572 -17.99202 -17.61353 -17.18418 -16.70310 -16.51791 -16.31392 -15.67100 -15.59352 -15.28447 -15.00199 -14.64688 -14.54150 -14.27633 -14.26399 -13.93066 -13.82305 -13.64929 -13.39675 -13.28485 -13.08396 -12.86902 -12.83517 -12.68785 -12.54259 -12.46381 -12.33120 -11.96688 -11.85683 -11.81484 -11.57729 -11.14521 -10.92468 -10.84187 -10.39666 -10.21260 -10.13504 -8.99012 -7.92624 -5.27875 0.55031 1.24834 1.45913 1.48367 1.54636 1.56979 1.98191 2.28271 2.43366 2.86430 3.17043 3.21185 3.36672 3.48098 3.54249 3.62039 3.69630 3.75902 4.00138 4.04344 4.09964 4.13277 4.20754 4.42462 4.50900 4.60966 4.63834 4.67353 4.73600 4.77208 4.81076 4.84806 4.88894 4.90459 4.93970 4.98003 5.01649 5.10990 5.14913 5.20887 5.29736 5.39754 5.47463 5.85692 6.15853 6.46991 6.87495 7.17107 7.33807 7.56926 8.51138 9.24694 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.001877 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.513937 B =14915.997459 C =15609.579601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.027 4.027 3 C -0.244 4.244 4 C 0.013 3.987 5 C -0.023 4.023 6 C -0.123 4.123 7 C 0.516 3.484 8 O -0.577 6.577 9 N -0.703 5.703 10 C 0.123 3.877 11 H 0.082 0.918 12 C 0.043 3.957 13 O -0.382 6.382 14 C 0.077 3.923 15 C 0.158 3.842 16 N -0.628 5.628 17 C -0.233 4.233 18 H 0.091 0.909 19 C -0.067 4.067 20 N -0.955 5.955 21 Si 0.982 3.018 22 H -0.289 1.289 23 H -0.294 1.294 24 H -0.263 1.263 25 C 0.118 3.882 26 C -0.108 4.108 27 N -0.394 5.394 28 O 0.083 5.917 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.192 0.808 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.420 0.580 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.007 0.993 41 H 0.050 0.950 42 H 0.249 0.751 43 H 0.074 0.926 44 H 0.042 0.958 45 H 0.110 0.890 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.376 -13.413 -9.965 31.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.265 4.265 4 C -0.145 4.145 5 C -0.061 4.061 6 C -0.163 4.163 7 C 0.304 3.696 8 O -0.457 6.457 9 N -0.357 5.357 10 C 0.017 3.983 11 H 0.100 0.900 12 C -0.034 4.034 13 O -0.299 6.299 14 C 0.036 3.964 15 C 0.032 3.968 16 N -0.356 5.356 17 C -0.361 4.361 18 H 0.108 0.892 19 C -0.260 4.260 20 N -0.603 5.603 21 Si 0.810 3.190 22 H -0.216 1.216 23 H -0.221 1.221 24 H -0.187 1.187 25 C -0.007 4.007 26 C -0.145 4.145 27 N -0.101 5.101 28 O 0.018 5.982 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.209 0.791 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.258 0.742 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.128 0.872 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.140 -13.674 -10.433 30.461 hybrid contribution 0.462 1.373 1.006 1.764 sum -24.678 -12.302 -9.427 29.141 Atomic orbital electron populations 1.20579 0.81062 1.05841 1.05680 1.25266 0.97940 0.85293 1.00536 1.22774 0.90535 1.02396 1.10808 1.23751 0.98161 0.90016 1.02578 1.19668 0.88400 0.99198 0.98860 1.21556 0.91777 1.01531 1.01424 1.21107 0.85806 0.82307 0.80330 1.90726 1.80058 1.36546 1.38354 1.45719 1.16243 1.42817 1.30897 1.22402 0.84053 0.96611 0.95228 0.89963 1.23842 0.81951 0.99716 0.97931 1.88378 1.30663 1.86229 1.24638 1.23747 0.95729 0.96186 0.80750 1.22378 0.95218 0.93929 0.85236 1.45978 1.80595 1.03251 1.05786 1.19417 1.39064 0.92011 0.85578 0.89165 1.25688 1.02528 0.95747 1.02026 1.70027 1.55255 1.00651 1.34385 0.85023 0.77219 0.77543 0.79195 1.21616 1.22082 1.18733 1.22973 0.96531 0.89741 0.91449 1.22739 0.91121 1.04697 0.95990 1.73820 0.97772 1.17062 1.21415 1.84787 1.11308 1.34243 1.67814 0.88996 0.87430 0.87516 0.79065 0.88421 0.90222 0.87184 0.86558 0.74210 0.89797 0.89844 0.97472 0.93144 0.94189 0.90772 0.94071 0.87217 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.18 10.45 71.24 0.74 0.56 16 2 C -0.03 -0.31 7.49 25.04 0.19 -0.12 16 3 C -0.24 -3.16 11.05 22.40 0.25 -2.91 16 4 C 0.01 0.23 6.59 43.58 0.29 0.52 16 5 C -0.02 -0.39 5.10 29.85 0.15 -0.24 16 6 C -0.12 -1.88 5.67 29.85 0.17 -1.71 16 7 C 0.52 11.37 7.83 87.66 0.69 12.06 16 8 O -0.58 -17.69 15.73 -3.06 -0.05 -17.74 16 9 N -0.70 -14.18 5.24 -435.30 -2.28 -16.46 16 10 C 0.12 3.42 3.37 46.52 0.16 3.58 16 11 H 0.08 2.73 7.74 -2.39 -0.02 2.71 16 12 C 0.04 1.24 7.49 72.67 0.54 1.79 16 13 O -0.38 -14.15 11.14 -148.98 -1.66 -15.81 16 14 C 0.08 3.00 1.68 -10.31 -0.02 2.98 16 15 C 0.16 8.02 6.94 86.24 0.60 8.62 16 16 N -0.63 -32.63 3.67 -732.87 -2.69 -35.32 16 17 C -0.23 -13.00 10.70 84.03 0.90 -12.10 16 18 H 0.09 4.74 7.83 -2.91 -0.02 4.71 16 19 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 20 N -0.95 -58.27 11.39 21.65 0.25 -58.02 16 21 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 C 0.12 4.87 8.45 86.23 0.73 5.60 16 26 C -0.11 -3.33 5.96 31.70 0.19 -3.15 16 27 N -0.39 -8.08 12.06 -49.55 -0.60 -8.68 16 28 O 0.08 1.46 11.20 71.65 0.80 2.26 16 29 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.19 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.10 1.62 8.09 -2.38 -0.02 1.60 16 34 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 35 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.42 5.68 8.51 -92.70 -0.79 4.89 16 38 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 41 H 0.05 2.79 7.01 -2.39 -0.02 2.78 16 42 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 43 H 0.07 2.65 8.01 -2.39 -0.02 2.63 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.11 2.70 7.85 -2.38 -0.02 2.68 16 46 H 0.08 2.75 7.83 -2.39 -0.02 2.73 16 Total: -1.00 -77.32 386.20 2.05 -75.28 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.21 Total: 14.84 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 6.04 Total: 12.13 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -5.32 Total: -118.48 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.91 Total: -31.29 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -77.32 2.05 -75.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724884303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.326 kcal (2) G-P(sol) polarization free energy of solvation -77.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds