Wall clock time and date at job start Tue Mar 31 2020 19:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40362 * 126.44183 * 2 1 4 4 C 1.36543 * 106.70871 * 179.97438 * 3 2 1 5 5 C 1.46650 * 125.99167 * 179.97438 * 4 3 2 6 6 O 1.21700 * 119.99813 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00245 * 179.97438 * 5 4 3 8 8 C 1.46503 * 120.00060 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47160 * 174.95459 * 8 7 5 10 10 N 1.46899 * 115.55183 * 272.74460 * 9 8 7 11 11 C 1.46895 * 111.00499 * 294.31322 * 10 9 8 12 12 C 1.50699 * 109.47554 * 177.90107 * 11 10 9 13 13 O 1.21300 * 119.99637 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00147 * 180.02562 * 12 11 10 15 15 C 1.37103 * 119.99607 * 180.02562 * 14 12 11 16 16 H 1.07994 * 119.99957 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99362 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00328 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99596 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46745 * 90.00431 * 19 17 15 21 21 H 1.48501 * 109.46956 * 209.99926 * 19 17 15 22 22 H 1.48493 * 109.47254 * 330.00325 * 19 17 15 23 23 C 1.53005 * 117.49667 * 127.07858 * 9 8 7 24 24 C 1.52997 * 117.49841 * 58.42051 * 9 8 7 25 25 O 1.34919 * 108.02345 * 0.22597 * 4 3 2 26 26 C 1.33930 * 109.38159 * 359.62469 * 25 4 3 27 27 C 1.50708 * 125.61521 * 180.17565 * 26 25 4 28 28 H 1.09003 * 109.46724 * 89.98262 * 1 2 3 29 29 H 1.08995 * 109.46866 * 209.97701 * 1 2 3 30 30 H 1.08993 * 109.47149 * 329.97921 * 1 2 3 31 31 H 1.08003 * 126.64507 * 0.03046 * 3 2 1 32 32 H 0.96991 * 120.00207 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47206 * 294.96025 * 8 7 5 34 34 H 1.09002 * 109.47234 * 54.95442 * 8 7 5 35 35 H 1.00904 * 110.99850 * 170.35599 * 10 9 8 36 36 H 1.08996 * 109.46960 * 297.90656 * 11 10 9 37 37 H 1.09002 * 109.46719 * 57.90464 * 11 10 9 38 38 H 0.96998 * 120.00076 * 359.97438 * 14 12 11 39 39 H 0.97000 * 119.99781 * 179.97438 * 18 17 15 40 40 H 1.08999 * 117.49960 * 359.97438 * 23 9 8 41 41 H 1.09002 * 117.49535 * 145.02252 * 23 9 8 42 42 H 1.09006 * 117.49894 * 214.97727 * 24 9 8 43 43 H 1.08999 * 117.50193 * 359.97438 * 24 9 8 44 44 H 1.09004 * 109.46791 * 270.24158 * 27 26 25 45 45 H 1.08995 * 109.47230 * 30.23739 * 27 26 25 46 46 H 1.08993 * 109.47194 * 150.24235 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6261 0.6681 0.0006 5 6 4.8379 1.4940 0.0003 6 8 4.7471 2.7076 -0.0001 7 7 6.0521 0.9091 0.0014 8 6 7.2627 1.7342 0.0006 9 6 8.4933 0.8343 0.1291 10 7 8.8994 0.5086 1.5027 11 6 9.3524 1.7099 2.2167 12 6 9.7111 1.3463 3.6345 13 8 9.6007 0.1991 4.0128 14 7 10.1544 2.2958 4.4821 15 6 10.4813 1.9649 5.7718 16 1 10.3838 0.9434 6.1084 17 6 10.9389 2.9437 6.6454 18 7 11.0579 4.1866 6.2356 19 14 11.3835 2.4930 8.4029 20 1 12.8180 2.1147 8.4690 21 1 11.1375 3.6582 9.2900 22 1 10.5486 1.3479 8.8466 23 6 9.5999 0.9975 -0.9149 24 6 8.6983 -0.2393 -0.9416 25 8 3.5858 -0.6804 -0.0041 26 6 2.3097 -1.0870 0.0006 27 6 1.8455 -2.5208 0.0014 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5141 31 1 2.0266 2.1625 0.0005 32 1 6.1245 -0.0581 0.0021 33 1 7.3189 2.2958 -0.9319 34 1 7.2304 2.4277 0.8409 35 1 9.6117 -0.2061 1.5093 36 1 10.2275 2.1224 1.7148 37 1 8.5537 2.4516 2.2228 38 1 10.2430 3.2131 4.1794 39 1 11.3770 4.8699 6.8457 40 1 9.4510 1.7457 -1.6934 41 1 10.6292 0.8627 -0.5825 42 1 9.1349 -1.1872 -0.6268 43 1 7.9562 -0.3047 -1.7373 44 1 1.7336 -2.8670 -1.0262 45 1 2.5802 -3.1403 0.5155 46 1 0.8869 -2.5920 0.5151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733240717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:38 Heat of formation + Delta-G solvation = -35.479424 kcal Electronic energy + Delta-G solvation = -28007.429771 eV Core-core repulsion = 23899.437533 eV Total energy + Delta-G solvation = -4107.992237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.94909 -39.84729 -38.71534 -37.75712 -34.89004 -34.21505 -33.94856 -32.61973 -32.28481 -31.17956 -29.11095 -28.06708 -26.58145 -25.85440 -24.07902 -22.82139 -22.24253 -21.32089 -20.05071 -19.55844 -19.23897 -17.99762 -17.87384 -16.79171 -16.49805 -16.15216 -15.90222 -15.42914 -15.30555 -14.77818 -14.47657 -14.23949 -14.09944 -14.01730 -13.82916 -13.53741 -13.30382 -13.26331 -13.20693 -12.97226 -12.73230 -12.52856 -12.50368 -12.20284 -11.86532 -11.72783 -11.64376 -11.48036 -11.10093 -10.89403 -10.49593 -10.38862 -10.24142 -10.18168 -9.93219 -9.50632 -9.24327 -8.59418 -8.44921 -8.08474 -7.95802 -6.41001 -3.81959 0.86947 2.04048 2.39223 2.94787 3.08705 3.18297 3.27005 3.33012 3.61015 3.89652 4.04388 4.25138 4.32624 4.44191 4.51173 4.56434 4.63414 4.81387 4.86165 5.03041 5.11276 5.11890 5.25615 5.25980 5.34414 5.39452 5.44647 5.51087 5.53418 5.55019 5.67454 5.67968 5.73665 5.78060 5.84249 5.92883 5.97735 6.20639 6.21224 6.26522 6.66228 7.10911 7.36068 7.53669 7.55822 7.97062 8.06306 8.61296 9.18108 9.54379 10.05510 10.76668 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.002342 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.777559 B =11950.530475 C =13027.017880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.195 4.195 3 C -0.115 4.115 4 C -0.074 4.074 5 C 0.602 3.398 6 O -0.523 6.523 7 N -0.706 5.706 8 C 0.165 3.835 9 C 0.037 3.963 10 N -0.626 5.626 11 C 0.049 3.951 12 C 0.441 3.559 13 O -0.584 6.584 14 N -0.562 5.562 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.204 4.204 24 C -0.167 4.167 25 O -0.160 6.160 26 C 0.016 3.984 27 C -0.078 4.078 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.409 0.591 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.354 0.646 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.393 0.607 39 H 0.272 0.728 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.818 -8.699 -18.648 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.196 4.196 3 C -0.136 4.136 4 C -0.126 4.126 5 C 0.388 3.612 6 O -0.402 6.402 7 N -0.356 5.356 8 C 0.041 3.959 9 C -0.056 4.056 10 N -0.257 5.257 11 C -0.083 4.083 12 C 0.226 3.774 13 O -0.468 6.468 14 N -0.199 5.199 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.542 5.542 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.245 4.245 24 C -0.205 4.205 25 O -0.056 6.056 26 C -0.036 4.036 27 C -0.134 4.134 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.175 0.825 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.226 0.774 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.230 -8.575 -17.980 25.695 hybrid contribution 1.231 0.285 0.353 1.312 sum -14.999 -8.290 -17.627 24.585 Atomic orbital electron populations 1.20188 0.88620 1.02832 1.02161 1.20206 0.97511 0.91781 1.10112 1.21811 0.90520 1.00480 1.00776 1.21967 0.96162 0.80253 1.14248 1.16510 0.81235 0.86328 0.77085 1.90892 1.86015 1.12206 1.51056 1.45789 1.04858 1.11158 1.73795 1.20812 0.80432 0.91860 1.02752 1.21842 0.96317 1.01270 0.86196 1.59835 1.46164 1.10046 1.09679 1.21695 0.99558 0.92865 0.94141 1.19751 0.84307 0.86536 0.86800 1.90526 1.58377 1.19999 1.77929 1.41853 1.57237 1.09933 1.10851 1.19696 1.40391 0.96647 0.86172 0.87929 1.25272 0.97426 0.94820 1.00436 1.69613 1.46709 1.00887 1.36981 0.85854 0.78837 0.78047 0.81529 1.20424 1.20890 1.19403 1.23667 0.96784 1.00829 1.03185 1.23164 1.02995 0.94169 1.00168 1.84011 1.28813 1.21800 1.70958 1.22580 0.80643 0.97198 1.03179 1.20408 1.02089 0.87100 1.03805 0.91354 0.91486 0.91266 0.82287 0.75578 0.90635 0.89700 0.82520 0.93383 0.89403 0.77413 0.91840 0.88328 0.88317 0.88053 0.88133 0.89660 0.90009 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.17 36.01 0.37 -0.16 16 2 C -0.19 -1.90 6.14 -104.93 -0.64 -2.54 16 3 C -0.12 -1.36 10.57 -39.39 -0.42 -1.77 16 4 C -0.07 -0.97 7.13 -36.80 -0.26 -1.23 16 5 C 0.60 8.66 7.79 -12.87 -0.10 8.56 16 6 O -0.52 -8.97 16.86 5.19 0.09 -8.89 16 7 N -0.71 -8.89 5.47 -61.63 -0.34 -9.22 16 8 C 0.16 2.08 5.74 -4.04 -0.02 2.05 16 9 C 0.04 0.45 1.90 -131.60 -0.25 0.20 16 10 N -0.63 -9.89 6.26 -101.23 -0.63 -10.52 16 11 C 0.05 0.88 6.03 -4.98 -0.03 0.85 16 12 C 0.44 10.51 7.82 -10.99 -0.09 10.42 16 13 O -0.58 -15.95 15.83 5.54 0.09 -15.86 16 14 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 15 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 16 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 18 N -0.90 -24.81 13.05 55.50 0.72 -24.09 16 19 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.20 -2.04 10.07 -26.69 -0.27 -2.31 16 24 C -0.17 -1.59 9.56 -26.69 -0.26 -1.85 16 25 O -0.16 -1.88 10.40 4.98 0.05 -1.83 16 26 C 0.02 0.16 7.31 -35.41 -0.26 -0.10 16 27 C -0.08 -0.43 10.21 36.01 0.37 -0.06 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.33 7.13 -51.93 -0.37 -0.04 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.16 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.41 4.66 7.92 -40.82 -0.32 4.33 16 33 H 0.08 0.85 7.89 -51.93 -0.41 0.44 16 34 H 0.08 1.25 6.46 -51.93 -0.34 0.91 16 35 H 0.35 5.67 8.38 -39.29 -0.33 5.34 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.51 6.55 -51.93 -0.34 1.17 16 38 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.10 0.87 8.04 -51.93 -0.42 0.45 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.35 7.12 -51.93 -0.37 -0.02 16 LS Contribution 395.69 15.07 5.96 5.96 Total: -1.00 -34.15 395.69 -7.77 -41.92 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -6.53 Total: 16.81 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -2.10 Total: 3.96 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.30 Total: -58.35 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: 0.23 Total: -26.57 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.15 -7.77 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733240717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.440 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds