Wall clock time and date at job start Tue Mar 31 2020 19:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40362 * 126.44183 * 2 1 4 4 C 1.36543 * 106.70871 * 179.97438 * 3 2 1 5 5 C 1.46650 * 125.99167 * 179.97438 * 4 3 2 6 6 O 1.21700 * 119.99813 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00245 * 179.97438 * 5 4 3 8 8 C 1.46503 * 120.00060 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47160 * 174.95459 * 8 7 5 10 10 N 1.46899 * 115.55183 * 272.74460 * 9 8 7 11 11 C 1.46895 * 111.00499 * 294.31322 * 10 9 8 12 12 C 1.50699 * 109.47554 * 177.90107 * 11 10 9 13 13 O 1.21300 * 119.99637 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00147 * 180.02562 * 12 11 10 15 15 C 1.37103 * 119.99607 * 180.02562 * 14 12 11 16 16 H 1.07994 * 119.99957 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99362 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00328 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99596 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46745 * 90.00431 * 19 17 15 21 21 H 1.48501 * 109.46956 * 209.99926 * 19 17 15 22 22 H 1.48493 * 109.47254 * 330.00325 * 19 17 15 23 23 C 1.53005 * 117.49667 * 127.07858 * 9 8 7 24 24 C 1.52997 * 117.49841 * 58.42051 * 9 8 7 25 25 O 1.34919 * 108.02345 * 0.22597 * 4 3 2 26 26 C 1.33930 * 109.38159 * 359.62469 * 25 4 3 27 27 C 1.50708 * 125.61521 * 180.17565 * 26 25 4 28 28 H 1.09003 * 109.46724 * 89.98262 * 1 2 3 29 29 H 1.08995 * 109.46866 * 209.97701 * 1 2 3 30 30 H 1.08993 * 109.47149 * 329.97921 * 1 2 3 31 31 H 1.08003 * 126.64507 * 0.03046 * 3 2 1 32 32 H 0.96991 * 120.00207 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47206 * 294.96025 * 8 7 5 34 34 H 1.09002 * 109.47234 * 54.95442 * 8 7 5 35 35 H 1.00904 * 110.99850 * 170.35599 * 10 9 8 36 36 H 1.08996 * 109.46960 * 297.90656 * 11 10 9 37 37 H 1.09002 * 109.46719 * 57.90464 * 11 10 9 38 38 H 0.96998 * 120.00076 * 359.97438 * 14 12 11 39 39 H 0.97000 * 119.99781 * 179.97438 * 18 17 15 40 40 H 1.08999 * 117.49960 * 359.97438 * 23 9 8 41 41 H 1.09002 * 117.49535 * 145.02252 * 23 9 8 42 42 H 1.09006 * 117.49894 * 214.97727 * 24 9 8 43 43 H 1.08999 * 117.50193 * 359.97438 * 24 9 8 44 44 H 1.09004 * 109.46791 * 270.24158 * 27 26 25 45 45 H 1.08995 * 109.47230 * 30.23739 * 27 26 25 46 46 H 1.08993 * 109.47194 * 150.24235 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6261 0.6681 0.0006 5 6 4.8379 1.4940 0.0003 6 8 4.7471 2.7076 -0.0001 7 7 6.0521 0.9091 0.0014 8 6 7.2627 1.7342 0.0006 9 6 8.4933 0.8343 0.1291 10 7 8.8994 0.5086 1.5027 11 6 9.3524 1.7099 2.2167 12 6 9.7111 1.3463 3.6345 13 8 9.6007 0.1991 4.0128 14 7 10.1544 2.2958 4.4821 15 6 10.4813 1.9649 5.7718 16 1 10.3838 0.9434 6.1084 17 6 10.9389 2.9437 6.6454 18 7 11.0579 4.1866 6.2356 19 14 11.3835 2.4930 8.4029 20 1 12.8180 2.1147 8.4690 21 1 11.1375 3.6582 9.2900 22 1 10.5486 1.3479 8.8466 23 6 9.5999 0.9975 -0.9149 24 6 8.6983 -0.2393 -0.9416 25 8 3.5858 -0.6804 -0.0041 26 6 2.3097 -1.0870 0.0006 27 6 1.8455 -2.5208 0.0014 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5141 31 1 2.0266 2.1625 0.0005 32 1 6.1245 -0.0581 0.0021 33 1 7.3189 2.2958 -0.9319 34 1 7.2304 2.4277 0.8409 35 1 9.6117 -0.2061 1.5093 36 1 10.2275 2.1224 1.7148 37 1 8.5537 2.4516 2.2228 38 1 10.2430 3.2131 4.1794 39 1 11.3770 4.8699 6.8457 40 1 9.4510 1.7457 -1.6934 41 1 10.6292 0.8627 -0.5825 42 1 9.1349 -1.1872 -0.6268 43 1 7.9562 -0.3047 -1.7373 44 1 1.7336 -2.8670 -1.0262 45 1 2.5802 -3.1403 0.5155 46 1 0.8869 -2.5920 0.5151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733240717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:37 Heat of formation + Delta-G solvation = -61.378499 kcal Electronic energy + Delta-G solvation = -28008.552839 eV Core-core repulsion = 23899.437533 eV Total energy + Delta-G solvation = -4109.115306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.77821 -40.94007 -40.21411 -39.20839 -36.06141 -35.71675 -35.12087 -33.95361 -33.22273 -33.01678 -29.76177 -28.92240 -28.26582 -26.64348 -25.90307 -23.67318 -23.08394 -22.20964 -21.20138 -20.97624 -20.46193 -19.93777 -18.92479 -17.96305 -17.62186 -17.25075 -17.01156 -16.82133 -16.45642 -16.27741 -15.90423 -15.76167 -15.49383 -15.03795 -14.70377 -14.59742 -14.20761 -14.13496 -14.05765 -13.84566 -13.67232 -13.62893 -13.56688 -13.49450 -13.00047 -12.95958 -12.88216 -12.47025 -12.44666 -12.43966 -12.14179 -11.97972 -11.54230 -11.50954 -11.20863 -10.77216 -10.36508 -10.29506 -10.04666 -9.37909 -9.29850 -8.48932 -5.98211 -0.04974 1.25333 1.36202 1.39908 1.53054 1.53305 2.00020 2.01376 2.07843 2.26007 2.61149 2.99012 3.17939 3.38763 3.55218 3.55791 3.72307 3.77959 3.86795 3.98566 4.23886 4.28316 4.41311 4.45517 4.47930 4.51588 4.60925 4.67608 4.70462 4.73122 4.74567 4.77839 4.88828 4.96855 5.04312 5.07049 5.11464 5.16742 5.21539 5.38312 5.55814 5.81835 5.83649 6.03458 6.30306 6.37860 6.56390 6.92361 7.09309 7.52291 8.07038 8.68521 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.002342 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.777559 B =11950.530475 C =13027.017880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.205 4.205 3 C -0.121 4.121 4 C -0.106 4.106 5 C 0.599 3.401 6 O -0.562 6.562 7 N -0.697 5.697 8 C 0.167 3.833 9 C 0.018 3.982 10 N -0.640 5.640 11 C 0.067 3.933 12 C 0.438 3.562 13 O -0.622 6.622 14 N -0.573 5.573 15 C -0.334 4.334 16 H 0.079 0.921 17 C -0.014 4.014 18 N -0.920 5.920 19 Si 0.994 3.006 20 H -0.268 1.268 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.190 4.190 24 C -0.148 4.148 25 O -0.169 6.169 26 C 0.019 3.981 27 C -0.078 4.078 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.415 0.585 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.352 0.648 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.585 -9.889 -19.751 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.207 4.207 3 C -0.142 4.142 4 C -0.158 4.158 5 C 0.387 3.613 6 O -0.444 6.444 7 N -0.347 5.347 8 C 0.043 3.957 9 C -0.075 4.075 10 N -0.271 5.271 11 C -0.065 4.065 12 C 0.225 3.775 13 O -0.508 6.508 14 N -0.210 5.210 15 C -0.464 4.464 16 H 0.097 0.903 17 C -0.214 4.214 18 N -0.561 5.561 19 Si 0.818 3.182 20 H -0.194 1.194 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.230 4.230 24 C -0.185 4.185 25 O -0.066 6.066 26 C -0.033 4.033 27 C -0.134 4.134 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.176 0.824 32 H 0.251 0.749 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.172 0.828 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.230 0.770 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.137 0.863 44 H 0.124 0.876 45 H 0.103 0.897 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.987 -9.771 -19.116 27.376 hybrid contribution 1.393 0.577 0.632 1.635 sum -15.594 -9.194 -18.484 25.872 Atomic orbital electron populations 1.20289 0.86196 1.03857 1.03294 1.20606 0.99173 0.90902 1.09982 1.22079 0.90800 1.01319 0.99965 1.21754 0.95953 0.80969 1.17103 1.16727 0.82023 0.86090 0.76493 1.90852 1.86669 1.13728 1.53146 1.45768 1.04536 1.11440 1.72926 1.20801 0.80678 0.91753 1.02442 1.21764 0.97032 1.03741 0.84930 1.59763 1.46014 1.09135 1.12228 1.21476 1.00637 0.93947 0.90487 1.20798 0.82325 0.85590 0.88751 1.90488 1.59482 1.21581 1.79281 1.41938 1.57941 1.10443 1.10647 1.19669 1.42657 0.96133 0.87921 0.90254 1.26085 0.96625 0.94581 1.04102 1.69678 1.46558 1.01485 1.38389 0.84909 0.78756 0.77909 0.76648 1.19361 1.19546 1.19803 1.23714 0.96026 1.01367 1.01919 1.23270 1.02718 0.93860 0.98678 1.83994 1.30220 1.21062 1.71277 1.23486 0.79757 0.99093 1.00975 1.20666 1.02983 0.84290 1.05441 0.90084 0.89474 0.91269 0.82354 0.74877 0.89059 0.92242 0.82773 0.91075 0.88810 0.77033 0.91247 0.86628 0.88369 0.87611 0.86347 0.87636 0.89675 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.17 71.24 0.72 -0.14 16 2 C -0.21 -3.77 6.14 -20.06 -0.12 -3.89 16 3 C -0.12 -2.89 10.57 22.39 0.24 -2.66 16 4 C -0.11 -2.83 7.13 24.07 0.17 -2.66 16 5 C 0.60 17.83 7.79 86.44 0.67 18.51 16 6 O -0.56 -20.19 16.86 -4.35 -0.07 -20.26 16 7 N -0.70 -17.67 5.47 -467.11 -2.55 -20.22 16 8 C 0.17 4.15 5.74 86.38 0.50 4.64 16 9 C 0.02 0.41 1.90 3.53 0.01 0.41 16 10 N -0.64 -20.04 6.26 -474.17 -2.97 -23.01 16 11 C 0.07 2.37 6.03 85.56 0.52 2.88 16 12 C 0.44 21.39 7.82 87.66 0.69 22.08 16 13 O -0.62 -34.99 15.83 -3.09 -0.05 -35.04 16 14 N -0.57 -30.25 5.29 -306.98 -1.62 -31.87 16 15 C -0.33 -19.40 9.68 84.04 0.81 -18.58 16 16 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 17 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 18 N -0.92 -50.74 13.05 21.66 0.28 -50.46 16 19 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 C -0.19 -3.34 10.07 30.62 0.31 -3.03 16 24 C -0.15 -2.46 9.56 30.62 0.29 -2.17 16 25 O -0.17 -3.92 10.40 -5.08 -0.05 -3.97 16 26 C 0.02 0.34 7.31 24.97 0.18 0.52 16 27 C -0.08 -0.63 10.21 71.24 0.73 0.09 16 28 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.58 7.13 -2.39 -0.02 0.57 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.41 9.34 7.92 -92.71 -0.73 8.61 16 33 H 0.09 1.98 7.89 -2.39 -0.02 1.96 16 34 H 0.06 1.79 6.46 -2.39 -0.02 1.78 16 35 H 0.35 11.17 8.38 -89.69 -0.75 10.41 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.09 3.26 6.55 -2.39 -0.02 3.24 16 38 H 0.40 19.98 7.90 -92.71 -0.73 19.25 16 39 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 40 H 0.12 1.68 8.04 -2.39 -0.02 1.66 16 41 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.11 0.46 7.12 -2.39 -0.02 0.44 16 Total: -1.00 -76.27 395.69 0.00 -76.27 By element: Atomic # 1 Polarization: 48.31 SS G_CDS: -1.17 Total: 47.14 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.18 Total: 15.71 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -6.86 Total: -125.56 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -0.18 Total: -59.27 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -76.27 0.00 -76.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733240717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.895 kcal (2) G-P(sol) polarization free energy of solvation -76.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds