Wall clock time and date at job start Tue Mar 31 2020 19:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40364 * 126.65034 * 2 1 4 4 C 1.35129 * 107.11973 * 180.29879 * 3 2 1 5 5 O 1.33933 * 108.76253 * 359.74785 * 4 3 2 6 6 C 1.34912 * 109.38664 * 0.02562 * 5 4 3 7 7 C 1.46660 * 125.98602 * 180.02562 * 6 5 4 8 8 O 1.21693 * 119.99845 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00141 * 0.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27920 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 H 1.09004 * 110.62856 * 308.09877 * 11 10 9 13 13 C 1.55142 * 110.70820 * 71.39552 * 11 10 9 14 14 C 1.54912 * 101.65289 * 154.03649 * 13 11 10 15 15 N 1.47848 * 104.79318 * 322.93474 * 14 13 11 16 16 C 1.46898 * 110.99770 * 146.36508 * 15 14 13 17 17 C 1.50708 * 109.47223 * 69.15046 * 16 15 14 18 18 O 1.21291 * 120.00268 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99755 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99848 * 179.97438 * 19 17 16 21 21 H 1.08010 * 119.99951 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00129 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00246 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00039 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46928 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46952 * 120.00276 * 24 22 20 27 27 H 1.48493 * 109.47326 * 240.00254 * 24 22 20 28 28 C 1.47437 * 108.57268 * 24.09457 * 15 14 13 29 29 H 1.09001 * 109.46758 * 270.12677 * 1 2 3 30 30 H 1.08999 * 109.47077 * 30.12291 * 1 2 3 31 31 H 1.08995 * 109.47320 * 150.12987 * 1 2 3 32 32 H 1.08004 * 126.44098 * 0.05479 * 3 2 1 33 33 H 1.07997 * 125.61827 * 179.71017 * 4 3 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 36 36 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 37 37 H 1.08998 * 110.99125 * 272.12850 * 13 11 10 38 38 H 1.08997 * 110.98603 * 35.95120 * 13 11 10 39 39 H 1.08997 * 110.37011 * 204.10488 * 14 13 11 40 40 H 1.08998 * 110.46261 * 81.80656 * 14 13 11 41 41 H 1.08999 * 109.47292 * 189.14928 * 16 15 14 42 42 H 1.09003 * 109.47478 * 309.15468 * 16 15 14 43 43 H 0.97003 * 120.00009 * 0.02562 * 19 17 16 44 44 H 0.97003 * 120.00730 * 179.97438 * 23 22 20 45 45 H 1.09002 * 109.88929 * 239.60914 * 28 15 14 46 46 H 1.08998 * 110.02228 * 118.49031 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1261 0.0000 4 6 3.6184 0.6744 -0.0067 5 8 3.6005 -0.6648 -0.0052 6 6 2.3220 -1.0956 0.0019 7 6 1.8843 -2.4953 0.0061 8 8 0.6968 -2.7614 0.0121 9 7 2.7971 -3.4869 0.0035 10 6 2.3597 -4.8850 0.0016 11 6 3.5841 -5.8024 -0.0083 12 1 4.2643 -5.5264 -0.8141 13 6 4.3085 -5.7651 1.3631 14 6 5.0047 -7.1488 1.3870 15 7 4.0413 -8.0672 0.7433 16 6 4.7385 -9.1159 -0.0130 17 6 5.4348 -10.0477 0.9453 18 8 5.3575 -9.8572 2.1406 19 7 6.1427 -11.0933 0.4739 20 6 6.7766 -11.9406 1.3455 21 1 6.7084 -11.7705 2.4100 22 6 7.5059 -13.0189 0.8597 23 7 7.5885 -13.2263 -0.4353 24 14 8.3690 -14.1739 2.0474 25 1 8.1221 -13.7254 3.4414 26 1 7.8418 -15.5508 1.8701 27 1 9.8287 -14.1639 1.7749 28 6 3.1579 -7.2800 -0.1363 29 1 -0.3633 0.0023 1.0277 30 1 -0.3633 0.8889 -0.5157 31 1 -0.3634 -0.8911 -0.5118 32 1 2.0308 2.1595 0.0008 33 1 4.5047 1.2915 -0.0130 34 1 3.7436 -3.2747 -0.0016 35 1 1.7659 -5.0812 0.8944 36 1 1.7558 -5.0757 -0.8855 37 1 5.0412 -4.9588 1.3959 38 1 3.5930 -5.6740 2.1803 39 1 5.1968 -7.4592 2.4140 40 1 5.9352 -7.1170 0.8204 41 1 4.0164 -9.6775 -0.6057 42 1 5.4744 -8.6587 -0.6744 43 1 6.2042 -11.2459 -0.4821 44 1 8.0980 -13.9788 -0.7745 45 1 2.1212 -7.3956 0.1799 46 1 3.2694 -7.6100 -1.1691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753118378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:55 Heat of formation + Delta-G solvation = -53.898023 kcal Electronic energy + Delta-G solvation = -27738.700853 eV Core-core repulsion = 23629.909925 eV Total energy + Delta-G solvation = -4108.790928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.10704 -39.97503 -39.11888 -37.65742 -35.44142 -34.36862 -33.86277 -32.16483 -31.19799 -30.79686 -29.48180 -28.12514 -27.05819 -25.22073 -24.02892 -22.98378 -21.65379 -21.03252 -20.81236 -19.99975 -19.19016 -18.45704 -17.86659 -16.84217 -16.69350 -16.44224 -15.86583 -15.71143 -15.15982 -14.92503 -14.55286 -14.43030 -14.10250 -13.85082 -13.74558 -13.64980 -13.41758 -13.39922 -13.17472 -12.92891 -12.71685 -12.43853 -12.18468 -12.07954 -11.72930 -11.47905 -11.27465 -11.16872 -10.98450 -10.89745 -10.64450 -10.44368 -10.33107 -10.20793 -10.12682 -9.50353 -9.48452 -8.96611 -8.42986 -7.95432 -7.86070 -6.40041 -3.80645 0.66739 1.92143 2.29581 2.83157 2.87787 3.17297 3.27680 3.35003 3.93300 4.03994 4.23960 4.26938 4.35803 4.43645 4.45948 4.56733 4.77301 5.06224 5.10597 5.12137 5.16731 5.24703 5.30702 5.34201 5.37675 5.42132 5.47980 5.59398 5.63681 5.72217 5.75059 5.79935 5.82247 5.91753 5.94910 6.03232 6.07996 6.23935 6.31146 6.42635 6.47087 7.11553 7.26107 7.28610 7.56953 7.75039 8.08588 8.64228 9.20437 9.56933 10.09110 10.77918 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035018 B = 0.001670 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.390735 B =16759.281929 C =17081.842320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.086 4.086 3 C -0.226 4.226 4 C -0.003 4.003 5 O -0.164 6.164 6 C -0.088 4.088 7 C 0.603 3.397 8 O -0.518 6.518 9 N -0.717 5.717 10 C 0.131 3.869 11 C -0.125 4.125 12 H 0.082 0.918 13 C -0.126 4.126 14 C 0.053 3.947 15 N -0.504 5.504 16 C 0.040 3.960 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.567 5.567 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.051 3.949 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.156 0.844 33 H 0.211 0.789 34 H 0.405 0.595 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.391 0.609 44 H 0.270 0.730 45 H 0.081 0.919 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 27.760 -4.237 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.245 4.245 4 C -0.073 4.073 5 O -0.060 6.060 6 C -0.140 4.140 7 C 0.389 3.611 8 O -0.396 6.396 9 N -0.368 5.368 10 C 0.008 3.992 11 C -0.144 4.144 12 H 0.100 0.900 13 C -0.164 4.164 14 C -0.074 4.074 15 N -0.228 5.228 16 C -0.091 4.091 17 C 0.230 3.770 18 O -0.460 6.460 19 N -0.204 5.204 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.078 4.078 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.227 0.773 34 H 0.240 0.760 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.541 27.015 -3.138 28.822 hybrid contribution 1.590 0.008 -0.840 1.798 sum -7.951 27.023 -3.978 28.448 Atomic orbital electron populations 1.20441 0.88132 1.03652 1.03015 1.20677 0.97748 0.90998 0.99470 1.21771 0.92454 1.00233 1.10063 1.24387 1.00030 0.80557 1.02282 1.84060 1.28323 1.22773 1.70801 1.21877 0.81541 0.94841 1.15692 1.16502 0.85753 0.81809 0.77039 1.90863 1.15677 1.82357 1.50715 1.45914 1.09978 1.06404 1.74479 1.21450 0.96377 0.78297 1.03066 1.22678 0.96695 0.95980 0.99083 0.89959 1.22867 0.99567 0.97689 0.96262 1.23026 0.93172 0.89454 1.01786 1.63262 1.19709 1.11341 1.28518 1.22125 0.97554 0.94256 0.95201 1.19751 0.83956 0.83998 0.89296 1.90508 1.64927 1.74570 1.16030 1.41871 1.44843 1.24048 1.09643 1.19747 1.26207 1.04983 0.91724 0.87892 1.25250 0.98041 0.98256 0.96475 1.69617 1.42140 1.30868 1.11839 0.85808 0.78646 0.79605 0.80331 1.19241 1.20769 1.20826 1.22819 0.98861 0.89770 0.96328 0.90693 0.91444 0.89430 0.82625 0.77274 0.75987 0.90409 0.90868 0.91148 0.90347 0.88750 0.94028 0.89377 0.93406 0.77554 0.91982 0.90095 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 9.81 36.01 0.35 -0.43 16 2 C -0.09 -0.78 6.20 -104.43 -0.65 -1.43 16 3 C -0.23 -1.51 10.83 -39.89 -0.43 -1.94 16 4 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 5 O -0.16 -1.38 10.40 5.00 0.05 -1.33 16 6 C -0.09 -0.88 7.13 -36.80 -0.26 -1.14 16 7 C 0.60 6.69 7.79 -12.86 -0.10 6.59 16 8 O -0.52 -7.06 14.74 5.20 0.08 -6.98 16 9 N -0.72 -6.56 5.47 -61.63 -0.34 -6.90 16 10 C 0.13 1.24 4.97 -4.04 -0.02 1.22 16 11 C -0.12 -1.22 2.96 -88.80 -0.26 -1.48 16 12 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 13 C -0.13 -1.39 6.44 -24.59 -0.16 -1.55 16 14 C 0.05 0.81 5.75 -2.29 -0.01 0.80 16 15 N -0.50 -8.24 4.86 -232.68 -1.13 -9.38 16 16 C 0.04 0.71 5.06 -4.97 -0.03 0.69 16 17 C 0.44 10.53 7.58 -10.98 -0.08 10.44 16 18 O -0.58 -15.62 14.61 5.55 0.08 -15.54 16 19 N -0.57 -14.41 5.29 -10.96 -0.06 -14.47 16 20 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 24 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.05 0.61 6.45 -2.84 -0.02 0.59 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.85 6.45 -51.93 -0.34 0.52 16 32 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.21 0.35 8.06 -52.49 -0.42 -0.08 16 34 H 0.41 3.06 8.23 -40.82 -0.34 2.73 16 35 H 0.08 0.81 8.00 -51.93 -0.42 0.39 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 39 H 0.09 1.72 7.38 -51.93 -0.38 1.34 16 40 H 0.04 0.64 7.62 -51.93 -0.40 0.25 16 41 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 42 H 0.05 0.77 7.85 -51.93 -0.41 0.36 16 43 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 0.95 7.82 -51.93 -0.41 0.54 16 46 H 0.06 0.63 7.56 -51.93 -0.39 0.24 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -33.89 384.57 -8.07 -41.96 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.69 Total: 9.92 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -1.55 Total: 4.73 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.80 Total: -54.66 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: 0.21 Total: -23.85 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.89 -8.07 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753118378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.940 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds