Wall clock time and date at job start Tue Mar 31 2020 19:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40364 * 126.65034 * 2 1 4 4 C 1.35129 * 107.11973 * 180.29879 * 3 2 1 5 5 O 1.33933 * 108.76253 * 359.74785 * 4 3 2 6 6 C 1.34912 * 109.38664 * 0.02562 * 5 4 3 7 7 C 1.46660 * 125.98602 * 180.02562 * 6 5 4 8 8 O 1.21693 * 119.99845 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00141 * 0.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27920 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 H 1.09004 * 110.62856 * 308.09877 * 11 10 9 13 13 C 1.55142 * 110.70820 * 71.39552 * 11 10 9 14 14 C 1.54912 * 101.65289 * 154.03649 * 13 11 10 15 15 N 1.47848 * 104.79318 * 322.93474 * 14 13 11 16 16 C 1.46898 * 110.99770 * 146.36508 * 15 14 13 17 17 C 1.50708 * 109.47223 * 69.15046 * 16 15 14 18 18 O 1.21291 * 120.00268 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99755 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99848 * 179.97438 * 19 17 16 21 21 H 1.08010 * 119.99951 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00129 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00246 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00039 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46928 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46952 * 120.00276 * 24 22 20 27 27 H 1.48493 * 109.47326 * 240.00254 * 24 22 20 28 28 C 1.47437 * 108.57268 * 24.09457 * 15 14 13 29 29 H 1.09001 * 109.46758 * 270.12677 * 1 2 3 30 30 H 1.08999 * 109.47077 * 30.12291 * 1 2 3 31 31 H 1.08995 * 109.47320 * 150.12987 * 1 2 3 32 32 H 1.08004 * 126.44098 * 0.05479 * 3 2 1 33 33 H 1.07997 * 125.61827 * 179.71017 * 4 3 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 36 36 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 37 37 H 1.08998 * 110.99125 * 272.12850 * 13 11 10 38 38 H 1.08997 * 110.98603 * 35.95120 * 13 11 10 39 39 H 1.08997 * 110.37011 * 204.10488 * 14 13 11 40 40 H 1.08998 * 110.46261 * 81.80656 * 14 13 11 41 41 H 1.08999 * 109.47292 * 189.14928 * 16 15 14 42 42 H 1.09003 * 109.47478 * 309.15468 * 16 15 14 43 43 H 0.97003 * 120.00009 * 0.02562 * 19 17 16 44 44 H 0.97003 * 120.00730 * 179.97438 * 23 22 20 45 45 H 1.09002 * 109.88929 * 239.60914 * 28 15 14 46 46 H 1.08998 * 110.02228 * 118.49031 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1261 0.0000 4 6 3.6184 0.6744 -0.0067 5 8 3.6005 -0.6648 -0.0052 6 6 2.3220 -1.0956 0.0019 7 6 1.8843 -2.4953 0.0061 8 8 0.6968 -2.7614 0.0121 9 7 2.7971 -3.4869 0.0035 10 6 2.3597 -4.8850 0.0016 11 6 3.5841 -5.8024 -0.0083 12 1 4.2643 -5.5264 -0.8141 13 6 4.3085 -5.7651 1.3631 14 6 5.0047 -7.1488 1.3870 15 7 4.0413 -8.0672 0.7433 16 6 4.7385 -9.1159 -0.0130 17 6 5.4348 -10.0477 0.9453 18 8 5.3575 -9.8572 2.1406 19 7 6.1427 -11.0933 0.4739 20 6 6.7766 -11.9406 1.3455 21 1 6.7084 -11.7705 2.4100 22 6 7.5059 -13.0189 0.8597 23 7 7.5885 -13.2263 -0.4353 24 14 8.3690 -14.1739 2.0474 25 1 8.1221 -13.7254 3.4414 26 1 7.8418 -15.5508 1.8701 27 1 9.8287 -14.1639 1.7749 28 6 3.1579 -7.2800 -0.1363 29 1 -0.3633 0.0023 1.0277 30 1 -0.3633 0.8889 -0.5157 31 1 -0.3634 -0.8911 -0.5118 32 1 2.0308 2.1595 0.0008 33 1 4.5047 1.2915 -0.0130 34 1 3.7436 -3.2747 -0.0016 35 1 1.7659 -5.0812 0.8944 36 1 1.7558 -5.0757 -0.8855 37 1 5.0412 -4.9588 1.3959 38 1 3.5930 -5.6740 2.1803 39 1 5.1968 -7.4592 2.4140 40 1 5.9352 -7.1170 0.8204 41 1 4.0164 -9.6775 -0.6057 42 1 5.4744 -8.6587 -0.6744 43 1 6.2042 -11.2459 -0.4821 44 1 8.0980 -13.9788 -0.7745 45 1 2.1212 -7.3956 0.1799 46 1 3.2694 -7.6100 -1.1691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753118378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:55 Heat of formation + Delta-G solvation = -79.736293 kcal Electronic energy + Delta-G solvation = -27739.821285 eV Core-core repulsion = 23629.909925 eV Total energy + Delta-G solvation = -4109.911359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.66764 -40.93790 -40.36799 -39.23560 -36.38504 -35.85661 -34.98936 -33.42045 -33.03822 -31.46575 -30.45614 -28.97910 -28.33757 -26.56484 -25.46821 -23.64850 -22.43877 -22.05149 -21.65512 -20.98611 -20.74416 -19.87941 -19.12881 -17.97778 -17.45970 -17.27564 -16.99706 -16.79869 -16.47621 -16.13604 -15.97140 -15.73149 -15.57183 -15.07151 -14.66330 -14.56156 -14.37082 -14.26843 -14.03968 -13.89239 -13.64659 -13.55022 -13.51775 -13.21551 -13.00706 -12.85737 -12.78720 -12.40929 -12.34012 -12.12076 -12.10867 -11.88593 -11.66891 -11.48112 -11.26789 -10.67453 -10.30574 -10.26930 -9.99815 -9.56048 -9.17591 -8.46151 -5.94618 0.02548 1.36466 1.41220 1.41487 1.55667 1.68609 2.07109 2.07450 2.20483 2.29472 2.85017 3.20621 3.38725 3.54726 3.62071 3.76191 3.82084 3.89251 3.96375 4.28058 4.31939 4.32471 4.37699 4.49871 4.54039 4.54924 4.62997 4.64184 4.73212 4.75770 4.80646 4.84570 4.94569 5.04058 5.11394 5.14880 5.19721 5.25556 5.35090 5.41563 5.47010 5.86028 5.90575 6.06262 6.17210 6.41579 6.62127 6.99678 7.14255 7.57893 8.14320 8.71534 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035018 B = 0.001670 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.390735 B =16759.281929 C =17081.842320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.097 4.097 3 C -0.238 4.238 4 C 0.014 3.986 5 O -0.171 6.171 6 C -0.120 4.120 7 C 0.599 3.401 8 O -0.554 6.554 9 N -0.707 5.707 10 C 0.138 3.862 11 C -0.106 4.106 12 H 0.102 0.898 13 C -0.114 4.114 14 C 0.051 3.949 15 N -0.531 5.531 16 C 0.054 3.946 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.049 3.951 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.180 0.820 33 H 0.254 0.746 34 H 0.415 0.585 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.039 0.961 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.083 0.917 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.958 29.662 -5.442 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.256 4.256 4 C -0.056 4.056 5 O -0.067 6.067 6 C -0.171 4.171 7 C 0.387 3.613 8 O -0.435 6.435 9 N -0.358 5.358 10 C 0.015 3.985 11 C -0.126 4.126 12 H 0.120 0.880 13 C -0.152 4.152 14 C -0.076 4.076 15 N -0.255 5.255 16 C -0.078 4.078 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.079 4.079 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.198 0.802 33 H 0.270 0.730 34 H 0.251 0.749 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.127 0.873 42 H 0.089 0.911 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.802 28.924 -4.375 30.549 hybrid contribution 1.361 -0.489 -0.445 1.513 sum -7.441 28.435 -4.820 29.785 Atomic orbital electron populations 1.20426 0.88097 1.03601 1.03006 1.21032 0.98241 0.91915 0.98774 1.22102 0.92397 1.00747 1.10384 1.25316 1.01372 0.79699 0.99180 1.84050 1.27456 1.24156 1.71001 1.21686 0.82501 0.94463 1.18447 1.16707 0.85475 0.82640 0.76510 1.90836 1.17026 1.83067 1.52540 1.45808 1.10279 1.05948 1.73768 1.21319 0.96045 0.78402 1.02737 1.22527 0.96767 0.94574 0.98686 0.88011 1.22788 0.99681 0.95743 0.96989 1.22919 0.93660 0.91635 0.99403 1.63139 1.20182 1.12256 1.29960 1.21984 0.98151 0.93821 0.93827 1.20857 0.82796 0.83768 0.89813 1.90482 1.66007 1.75452 1.18329 1.41939 1.45401 1.24535 1.09512 1.19682 1.28411 1.06873 0.91168 0.90481 1.26017 0.98021 0.99042 0.98210 1.69673 1.42250 1.31388 1.12896 0.84878 0.77989 0.77696 0.77803 1.19933 1.19640 1.19530 1.22879 0.97913 0.90565 0.96502 0.90675 0.89380 0.91518 0.80231 0.73030 0.74883 0.91565 0.90507 0.88788 0.90999 0.92785 0.94225 0.87332 0.91117 0.77040 0.91342 0.89857 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.81 71.24 0.70 -0.82 16 2 C -0.10 -1.66 6.20 -19.74 -0.12 -1.79 16 3 C -0.24 -2.57 10.83 22.07 0.24 -2.33 16 4 C 0.01 0.12 12.08 67.10 0.81 0.93 16 5 O -0.17 -2.53 10.40 -5.04 -0.05 -2.58 16 6 C -0.12 -2.30 7.13 24.07 0.17 -2.13 16 7 C 0.60 13.20 7.79 86.44 0.67 13.87 16 8 O -0.55 -15.46 14.74 -4.33 -0.06 -15.53 16 9 N -0.71 -12.11 5.47 -467.11 -2.55 -14.66 16 10 C 0.14 2.42 4.97 86.38 0.43 2.85 16 11 C -0.11 -1.84 2.96 -9.61 -0.03 -1.87 16 12 H 0.10 1.45 8.14 -2.38 -0.02 1.44 16 13 C -0.11 -2.39 6.44 31.98 0.21 -2.18 16 14 C 0.05 1.59 5.75 86.77 0.50 2.08 16 15 N -0.53 -17.05 4.86 -890.08 -4.33 -21.38 16 16 C 0.05 1.85 5.06 85.56 0.43 2.29 16 17 C 0.44 21.28 7.58 87.66 0.66 21.94 16 18 O -0.62 -34.78 14.61 -3.07 -0.04 -34.83 16 19 N -0.58 -29.90 5.29 -306.97 -1.62 -31.52 16 20 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 24 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 C 0.05 1.09 6.45 86.65 0.56 1.65 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.36 6.45 -2.39 -0.02 1.34 16 32 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.25 -0.36 8.06 -2.91 -0.02 -0.38 16 34 H 0.41 5.46 8.23 -92.71 -0.76 4.70 16 35 H 0.07 1.35 8.00 -2.38 -0.02 1.33 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.62 7.94 -2.39 -0.02 1.60 16 39 H 0.05 2.08 7.38 -2.39 -0.02 2.07 16 40 H 0.04 1.21 7.62 -2.39 -0.02 1.20 16 41 H 0.11 3.31 8.03 -2.39 -0.02 3.30 16 42 H 0.07 2.14 7.85 -2.39 -0.02 2.12 16 43 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 44 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 45 H 0.08 1.82 7.82 -2.39 -0.02 1.80 16 46 H 0.08 1.44 7.56 -2.39 -0.02 1.42 16 Total: -1.00 -76.64 384.57 -0.32 -76.96 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.47 Total: 31.82 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 6.51 Total: 15.99 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -8.22 Total: -117.20 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.16 Total: -52.93 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -76.64 -0.32 -76.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753118378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.780 kcal (2) G-P(sol) polarization free energy of solvation -76.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds