Wall clock time and date at job start Tue Mar 31 2020 19:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35133 * 125.61742 * 2 1 4 4 C 1.40357 * 107.11492 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.64338 * 179.97438 * 4 3 2 6 6 C 1.36541 * 106.71163 * 359.97438 * 4 3 2 7 7 C 1.46653 * 125.99020 * 180.02562 * 6 4 3 8 8 O 1.21699 * 119.99858 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00028 * 180.02562 * 7 6 4 10 10 C 1.46502 * 119.99816 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.53936 * 113.73586 * 271.72445 * 11 10 9 13 13 N 1.47961 * 86.18176 * 221.92142 * 12 11 10 14 14 C 1.46899 * 110.99686 * 137.58135 * 13 12 11 15 15 C 1.50703 * 109.47080 * 70.64287 * 14 13 12 16 16 O 1.21287 * 119.99978 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00044 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00447 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99680 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00487 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00060 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99791 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47080 * 89.99713 * 22 20 18 24 24 H 1.48503 * 109.47097 * 209.99839 * 22 20 18 25 25 H 1.48500 * 109.47357 * 329.99769 * 22 20 18 26 26 C 1.47962 * 90.76407 * 24.68713 * 13 12 11 27 27 O 1.33927 * 125.61657 * 179.68865 * 2 1 3 28 28 H 1.09002 * 109.47152 * 89.99979 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00080 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00060 * 1 2 3 31 31 H 1.08001 * 126.43944 * 359.93978 * 3 2 1 32 32 H 1.09002 * 109.47643 * 90.02386 * 5 4 3 33 33 H 1.09000 * 109.47179 * 210.02357 * 5 4 3 34 34 H 1.09002 * 109.47206 * 330.02309 * 5 4 3 35 35 H 0.96998 * 120.00307 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.47239 * 299.99363 * 10 9 7 37 37 H 1.09002 * 109.47589 * 59.99860 * 10 9 7 38 38 H 1.09003 * 112.93813 * 43.43303 * 11 10 9 39 39 H 1.09005 * 113.75701 * 336.23982 * 12 11 10 40 40 H 1.08994 * 113.76034 * 107.60122 * 12 11 10 41 41 H 1.09008 * 109.46944 * 190.63751 * 14 13 12 42 42 H 1.08997 * 109.47680 * 310.63671 * 14 13 12 43 43 H 0.97007 * 120.00241 * 359.97438 * 17 15 14 44 44 H 0.97001 * 119.99762 * 180.02562 * 21 20 18 45 45 H 1.08996 * 113.75805 * 220.99098 * 26 13 12 46 46 H 1.09001 * 113.75416 * 89.62397 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 4.8617 1.5143 0.0003 6 6 3.5824 -0.7116 0.0015 7 6 4.7414 -1.6101 0.0029 8 8 5.8680 -1.1499 0.0038 9 7 4.5590 -2.9454 0.0032 10 6 5.7169 -3.8429 0.0052 11 6 5.2363 -5.2955 0.0058 12 6 4.9998 -5.8694 1.4144 13 7 5.6481 -7.1015 0.9137 14 6 6.5760 -7.6508 1.9113 15 6 5.7927 -8.2204 3.0659 16 8 4.5808 -8.1729 3.0587 17 7 6.4389 -8.7825 4.1065 18 6 5.7264 -9.3002 5.1571 19 1 4.6472 -9.2580 5.1507 20 6 6.3926 -9.8802 6.2297 21 7 5.7095 -10.3769 7.2366 22 14 8.2591 -9.9539 6.2405 23 1 8.7990 -8.7309 6.8870 24 1 8.7028 -11.1515 6.9983 25 1 8.7593 -10.0379 4.8448 26 6 6.3745 -6.3248 -0.1151 27 8 2.2870 -1.0887 0.0059 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.9613 2.1260 -0.0009 32 1 5.1599 1.7224 1.0279 33 1 5.6685 0.9915 -0.5134 34 1 4.6512 2.4522 -0.5139 35 1 3.6610 -3.3123 0.0029 36 1 6.3200 -3.6599 -0.8841 37 1 6.3177 -3.6591 0.8959 38 1 4.4115 -5.4703 -0.6852 39 1 5.5654 -5.3620 2.1960 40 1 3.9469 -5.9979 1.6652 41 1 7.1753 -8.4387 1.4550 42 1 7.2318 -6.8587 2.2726 43 1 7.4082 -8.8208 4.1122 44 1 6.1746 -10.7814 7.9855 45 1 6.4199 -6.8174 -1.0864 46 1 7.3422 -5.9506 0.2191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753399228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:42 Heat of formation + Delta-G solvation = -20.116120 kcal Electronic energy + Delta-G solvation = -27817.898804 eV Core-core repulsion = 23710.572770 eV Total energy + Delta-G solvation = -4107.326034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.05647 -40.36902 -39.41987 -37.91086 -35.28703 -34.25360 -33.94058 -32.84568 -31.73043 -31.05288 -28.40148 -28.29687 -26.68518 -26.05409 -24.77029 -22.70726 -21.94510 -21.51658 -20.27373 -19.54705 -19.36330 -18.46458 -18.10245 -16.88617 -16.52027 -16.22009 -15.76259 -15.43927 -15.32238 -15.11547 -14.76726 -14.46004 -14.21374 -13.95565 -13.61115 -13.51979 -13.37152 -13.26427 -13.22544 -12.98950 -12.90388 -12.69868 -12.59343 -12.40894 -12.13527 -11.96654 -11.72891 -11.43117 -11.19519 -10.75005 -10.69428 -10.60093 -10.32249 -9.98102 -9.97726 -9.57337 -9.42842 -8.77443 -8.71959 -8.36488 -8.18366 -6.31700 -3.83106 0.73435 1.96689 2.28977 2.89399 2.92209 3.02251 3.06222 3.14570 3.72179 3.89913 4.09664 4.16854 4.30559 4.44786 4.52368 4.56565 4.65945 4.87953 4.97613 5.04121 5.05581 5.17967 5.18504 5.24383 5.30293 5.31129 5.44202 5.44832 5.49377 5.52731 5.56486 5.66925 5.69715 5.76833 5.83233 5.89991 5.98332 6.05424 6.15859 6.24361 6.50917 6.54971 7.08109 7.19827 7.57253 7.81858 8.13235 8.59156 8.94324 9.41653 9.82140 10.81420 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.002008 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.611154 B =13943.600716 C =14338.571992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.025 3.975 3 C -0.226 4.226 4 C -0.082 4.082 5 C -0.095 4.095 6 C -0.090 4.090 7 C 0.604 3.396 8 O -0.521 6.521 9 N -0.716 5.716 10 C 0.128 3.872 11 C -0.135 4.135 12 C 0.024 3.976 13 N -0.453 5.453 14 C 0.007 3.993 15 C 0.452 3.548 16 O -0.561 6.561 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.009 3.991 27 O -0.161 6.161 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.408 0.592 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.092 0.908 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 22.376 -18.089 28.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.027 4.027 3 C -0.245 4.245 4 C -0.085 4.085 5 C -0.152 4.152 6 C -0.142 4.142 7 C 0.391 3.609 8 O -0.399 6.399 9 N -0.367 5.367 10 C 0.005 3.995 11 C -0.154 4.154 12 C -0.104 4.104 13 N -0.175 5.175 14 C -0.125 4.125 15 C 0.238 3.762 16 O -0.443 6.443 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.195 1.195 26 C -0.120 4.120 27 O -0.058 6.058 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.173 0.827 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.243 0.757 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.110 0.890 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.535 21.685 -18.038 28.427 hybrid contribution 1.641 0.316 0.626 1.785 sum -1.894 22.001 -17.412 28.121 Atomic orbital electron populations 1.20442 0.84442 1.04715 1.04028 1.22801 0.94304 0.84042 1.01596 1.21477 0.91841 0.99835 1.11311 1.20623 0.96399 0.92194 0.99249 1.20436 0.93839 0.97895 1.03000 1.21771 0.81925 0.94107 1.16387 1.16500 0.86042 0.81485 0.76896 1.90850 1.22105 1.75983 1.51002 1.45899 1.11034 1.05320 1.74448 1.21516 0.87703 0.87525 1.02767 1.23354 1.00105 0.92170 0.99763 1.23910 1.02798 0.89585 0.94138 1.68415 1.19622 1.21237 1.08256 1.22508 0.95360 1.00463 0.94193 1.19587 0.88553 0.84185 0.83877 1.90557 1.13587 1.60524 1.79592 1.42221 1.07701 1.54210 1.18968 1.19421 0.94753 1.34184 0.94950 0.86308 1.25041 0.98459 0.97100 0.95604 1.69622 1.35719 1.38464 1.08326 0.86672 0.85416 0.78883 0.78431 1.19648 1.20132 1.19484 1.23972 0.95790 0.93511 0.98743 1.84003 1.15842 1.34788 1.71151 0.89493 0.88893 0.89906 0.82718 0.90703 0.89474 0.91485 0.75739 0.90741 0.90863 0.87530 0.91328 0.88587 0.88972 0.92653 0.79723 0.91612 0.88951 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.41 36.01 0.37 0.02 16 2 C 0.03 0.21 7.31 -35.41 -0.26 -0.05 16 3 C -0.23 -1.90 10.73 -39.89 -0.43 -2.33 16 4 C -0.08 -0.86 6.20 -104.44 -0.65 -1.50 16 5 C -0.10 -0.87 9.81 36.01 0.35 -0.51 16 6 C -0.09 -1.04 7.13 -36.80 -0.26 -1.30 16 7 C 0.60 7.41 7.79 -12.86 -0.10 7.31 16 8 O -0.52 -7.55 14.74 5.19 0.08 -7.47 16 9 N -0.72 -7.40 5.55 -61.63 -0.34 -7.75 16 10 C 0.13 1.28 5.53 -4.04 -0.02 1.26 16 11 C -0.13 -1.40 3.94 -89.68 -0.35 -1.75 16 12 C 0.02 0.35 6.31 -2.77 -0.02 0.33 16 13 N -0.45 -7.05 5.95 -239.72 -1.43 -8.47 16 14 C 0.01 0.12 5.31 -4.97 -0.03 0.09 16 15 C 0.45 10.37 7.59 -10.99 -0.08 10.28 16 16 O -0.56 -15.10 15.12 5.55 0.08 -15.01 16 17 N -0.59 -14.23 5.09 -10.96 -0.06 -14.28 16 18 C -0.30 -8.67 10.16 -14.94 -0.15 -8.82 16 19 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 22 Si 0.88 19.50 27.74 -169.99 -4.71 14.78 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 26 C 0.01 0.10 7.54 -2.76 -0.02 0.08 16 27 O -0.16 -1.68 10.40 5.00 0.05 -1.63 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.92 6.45 -51.93 -0.33 0.58 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.41 3.66 8.23 -40.82 -0.34 3.33 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.80 7.84 -51.93 -0.41 0.40 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.01 7.53 -51.93 -0.39 0.61 16 40 H 0.10 1.56 8.09 -51.93 -0.42 1.14 16 41 H 0.09 1.38 8.14 -51.92 -0.42 0.95 16 42 H 0.06 0.80 7.69 -51.93 -0.40 0.40 16 43 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -35.54 386.89 -8.17 -43.71 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.71 Total: 11.25 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.74 Total: 4.14 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -1.05 Total: -55.61 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: 0.21 Total: -24.11 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.54 -8.17 -43.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753399228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.596 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds