Wall clock time and date at job start Tue Mar 31 2020 19:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35133 * 125.61742 * 2 1 4 4 C 1.40357 * 107.11492 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.64338 * 179.97438 * 4 3 2 6 6 C 1.36541 * 106.71163 * 359.97438 * 4 3 2 7 7 C 1.46653 * 125.99020 * 180.02562 * 6 4 3 8 8 O 1.21699 * 119.99858 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00028 * 180.02562 * 7 6 4 10 10 C 1.46502 * 119.99816 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.53936 * 113.73586 * 271.72445 * 11 10 9 13 13 N 1.47961 * 86.18176 * 221.92142 * 12 11 10 14 14 C 1.46899 * 110.99686 * 137.58135 * 13 12 11 15 15 C 1.50703 * 109.47080 * 70.64287 * 14 13 12 16 16 O 1.21287 * 119.99978 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00044 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00447 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99680 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00487 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00060 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99791 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47080 * 89.99713 * 22 20 18 24 24 H 1.48503 * 109.47097 * 209.99839 * 22 20 18 25 25 H 1.48500 * 109.47357 * 329.99769 * 22 20 18 26 26 C 1.47962 * 90.76407 * 24.68713 * 13 12 11 27 27 O 1.33927 * 125.61657 * 179.68865 * 2 1 3 28 28 H 1.09002 * 109.47152 * 89.99979 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00080 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00060 * 1 2 3 31 31 H 1.08001 * 126.43944 * 359.93978 * 3 2 1 32 32 H 1.09002 * 109.47643 * 90.02386 * 5 4 3 33 33 H 1.09000 * 109.47179 * 210.02357 * 5 4 3 34 34 H 1.09002 * 109.47206 * 330.02309 * 5 4 3 35 35 H 0.96998 * 120.00307 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.47239 * 299.99363 * 10 9 7 37 37 H 1.09002 * 109.47589 * 59.99860 * 10 9 7 38 38 H 1.09003 * 112.93813 * 43.43303 * 11 10 9 39 39 H 1.09005 * 113.75701 * 336.23982 * 12 11 10 40 40 H 1.08994 * 113.76034 * 107.60122 * 12 11 10 41 41 H 1.09008 * 109.46944 * 190.63751 * 14 13 12 42 42 H 1.08997 * 109.47680 * 310.63671 * 14 13 12 43 43 H 0.97007 * 120.00241 * 359.97438 * 17 15 14 44 44 H 0.97001 * 119.99762 * 180.02562 * 21 20 18 45 45 H 1.08996 * 113.75805 * 220.99098 * 26 13 12 46 46 H 1.09001 * 113.75416 * 89.62397 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 4.8617 1.5143 0.0003 6 6 3.5824 -0.7116 0.0015 7 6 4.7414 -1.6101 0.0029 8 8 5.8680 -1.1499 0.0038 9 7 4.5590 -2.9454 0.0032 10 6 5.7169 -3.8429 0.0052 11 6 5.2363 -5.2955 0.0058 12 6 4.9998 -5.8694 1.4144 13 7 5.6481 -7.1015 0.9137 14 6 6.5760 -7.6508 1.9113 15 6 5.7927 -8.2204 3.0659 16 8 4.5808 -8.1729 3.0587 17 7 6.4389 -8.7825 4.1065 18 6 5.7264 -9.3002 5.1571 19 1 4.6472 -9.2580 5.1507 20 6 6.3926 -9.8802 6.2297 21 7 5.7095 -10.3769 7.2366 22 14 8.2591 -9.9539 6.2405 23 1 8.7990 -8.7309 6.8870 24 1 8.7028 -11.1515 6.9983 25 1 8.7593 -10.0379 4.8448 26 6 6.3745 -6.3248 -0.1151 27 8 2.2870 -1.0887 0.0059 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.9613 2.1260 -0.0009 32 1 5.1599 1.7224 1.0279 33 1 5.6685 0.9915 -0.5134 34 1 4.6512 2.4522 -0.5139 35 1 3.6610 -3.3123 0.0029 36 1 6.3200 -3.6599 -0.8841 37 1 6.3177 -3.6591 0.8959 38 1 4.4115 -5.4703 -0.6852 39 1 5.5654 -5.3620 2.1960 40 1 3.9469 -5.9979 1.6652 41 1 7.1753 -8.4387 1.4550 42 1 7.2318 -6.8587 2.2726 43 1 7.4082 -8.8208 4.1122 44 1 6.1746 -10.7814 7.9855 45 1 6.4199 -6.8174 -1.0864 46 1 7.3422 -5.9506 0.2191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753399228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:42 Heat of formation + Delta-G solvation = -49.183652 kcal Electronic energy + Delta-G solvation = -27819.159267 eV Core-core repulsion = 23710.572770 eV Total energy + Delta-G solvation = -4108.586497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.76671 -41.47469 -40.47003 -39.61379 -36.23572 -35.94247 -35.00336 -33.79531 -33.42674 -32.22807 -29.43639 -28.90698 -27.76215 -27.07855 -26.39797 -23.93803 -22.70653 -22.28052 -21.30870 -21.11655 -20.39749 -20.22002 -19.08432 -17.85896 -17.62952 -17.44923 -16.91475 -16.61160 -16.51534 -16.38242 -15.93790 -15.69416 -15.34002 -14.94206 -14.87417 -14.52591 -14.44488 -14.25829 -14.07302 -14.02249 -13.73704 -13.66423 -13.62854 -13.47482 -13.26938 -13.13183 -12.90850 -12.59850 -12.45526 -12.34061 -12.00098 -11.82435 -11.69919 -11.52082 -11.24077 -10.67877 -10.43771 -10.30115 -10.27216 -9.70466 -9.43271 -8.43562 -6.04551 -0.04424 1.28276 1.29732 1.33449 1.42609 1.57715 1.92843 2.03362 2.12581 2.20898 2.66104 3.11079 3.13397 3.39730 3.58070 3.64358 3.76308 3.82080 4.05782 4.16625 4.27459 4.34646 4.42440 4.43728 4.47525 4.50223 4.55903 4.58814 4.66142 4.70376 4.73346 4.74701 4.83514 4.88043 4.96346 5.11273 5.15427 5.24384 5.31972 5.39290 5.49528 5.51424 5.84088 5.89069 6.01744 6.36628 6.57031 6.85600 6.94748 7.36850 7.93870 8.74105 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.002008 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.611154 B =13943.600716 C =14338.571992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.027 3.973 3 C -0.233 4.233 4 C -0.090 4.090 5 C -0.093 4.093 6 C -0.123 4.123 7 C 0.601 3.399 8 O -0.551 6.551 9 N -0.711 5.711 10 C 0.134 3.866 11 C -0.109 4.109 12 C 0.015 3.985 13 N -0.485 5.485 14 C 0.019 3.981 15 C 0.449 3.551 16 O -0.610 6.610 17 N -0.592 5.592 18 C -0.328 4.328 19 H 0.054 0.946 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.231 1.231 26 C 0.020 3.980 27 O -0.173 6.173 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.182 0.818 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.413 0.587 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.113 0.887 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 23.809 -20.153 31.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.026 4.026 3 C -0.251 4.251 4 C -0.093 4.093 5 C -0.149 4.149 6 C -0.174 4.174 7 C 0.388 3.612 8 O -0.432 6.432 9 N -0.361 5.361 10 C 0.011 3.989 11 C -0.128 4.128 12 C -0.114 4.114 13 N -0.208 5.208 14 C -0.113 4.113 15 C 0.237 3.763 16 O -0.494 6.494 17 N -0.234 5.234 18 C -0.457 4.457 19 H 0.072 0.928 20 C -0.215 4.215 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.154 1.154 26 C -0.108 4.108 27 O -0.070 6.070 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.102 0.898 31 H 0.200 0.800 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.249 0.751 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.089 0.911 45 H 0.131 0.869 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.338 23.115 -20.136 30.685 hybrid contribution 0.721 -0.083 1.257 1.451 sum -0.617 23.033 -18.879 29.788 Atomic orbital electron populations 1.20668 0.81632 1.05840 1.05417 1.23650 0.95845 0.83517 0.99571 1.21816 0.90824 1.01237 1.11268 1.21010 0.97776 0.92145 0.98344 1.20436 0.92910 0.98505 1.03086 1.21721 0.82253 0.94519 1.18957 1.16660 0.86036 0.81951 0.76505 1.90819 1.23172 1.76538 1.52669 1.45888 1.11538 1.04967 1.73737 1.21479 0.87530 0.86947 1.02975 1.23157 1.00452 0.92297 0.96898 1.23868 1.00897 0.90198 0.96455 1.68407 1.20930 1.22446 1.08986 1.22472 0.94906 1.01980 0.91938 1.20902 0.88525 0.82212 0.84650 1.90537 1.16371 1.61770 1.80726 1.42059 1.08410 1.54623 1.18336 1.18988 0.92580 1.36550 0.97629 0.92783 1.26134 1.05620 0.95559 0.94171 1.69805 1.38916 1.39366 1.09372 0.85363 0.76248 0.79259 0.80649 1.18179 1.19895 1.15431 1.24090 0.96250 0.92365 0.98096 1.83990 1.15656 1.35855 1.71532 0.87805 0.86708 0.89803 0.80050 0.90639 0.91222 0.89149 0.75098 0.89421 0.91676 0.86588 0.91889 0.91751 0.86162 0.89549 0.77509 0.91119 0.86902 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.41 71.24 0.74 0.22 16 2 C 0.03 0.40 7.31 24.97 0.18 0.59 16 3 C -0.23 -3.56 10.73 22.07 0.24 -3.33 16 4 C -0.09 -1.84 6.20 -19.75 -0.12 -1.96 16 5 C -0.09 -1.66 9.81 71.24 0.70 -0.96 16 6 C -0.12 -2.86 7.13 24.07 0.17 -2.69 16 7 C 0.60 14.95 7.79 86.44 0.67 15.62 16 8 O -0.55 -16.22 14.74 -4.34 -0.06 -16.28 16 9 N -0.71 -14.54 5.55 -467.10 -2.59 -17.14 16 10 C 0.13 2.49 5.53 86.38 0.48 2.96 16 11 C -0.11 -2.07 3.94 -10.15 -0.04 -2.11 16 12 C 0.01 0.43 6.31 86.41 0.55 0.97 16 13 N -0.48 -14.27 5.95 -912.33 -5.43 -19.69 16 14 C 0.02 0.57 5.31 85.56 0.45 1.03 16 15 C 0.45 20.70 7.59 87.66 0.67 21.37 16 16 O -0.61 -34.41 15.12 -3.05 -0.05 -34.45 16 17 N -0.59 -28.45 5.09 -306.99 -1.56 -30.01 16 18 C -0.33 -19.53 10.16 84.04 0.85 -18.67 16 19 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 20 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 21 N -0.93 -56.90 13.96 21.66 0.30 -56.60 16 22 Si 0.97 39.21 27.74 68.60 1.90 41.12 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 25 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 26 C 0.02 0.37 7.54 86.41 0.65 1.03 16 27 O -0.17 -3.58 10.40 -5.03 -0.05 -3.64 16 28 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.26 16 30 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.50 6.45 -2.39 -0.02 1.48 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.41 7.44 8.23 -92.71 -0.76 6.68 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.35 7.84 -2.39 -0.02 1.34 16 38 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 1.85 7.53 -2.38 -0.02 1.83 16 40 H 0.06 2.22 8.09 -2.39 -0.02 2.20 16 41 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 42 H 0.09 2.17 7.69 -2.39 -0.02 2.15 16 43 H 0.39 15.45 5.76 -92.70 -0.53 14.92 16 44 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.09 1.36 7.75 -2.39 -0.02 1.34 16 Total: -1.00 -84.78 386.89 -1.21 -86.00 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -0.33 Total: 37.07 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 6.66 Total: 13.62 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -9.28 Total: -123.44 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -0.16 Total: -54.37 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.90 Total: 41.12 kcal Total: -84.78 -1.21 -86.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753399228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.816 kcal (2) G-P(sol) polarization free energy of solvation -84.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds