Wall clock time and date at job start Tue Mar 31 2020 19:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40366 * 126.43904 * 2 1 4 4 C 1.36548 * 106.70499 * 180.02562 * 3 2 1 5 5 C 1.46661 * 125.98756 * 179.97438 * 4 3 2 6 6 O 1.21700 * 119.99669 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00012 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99945 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47298 * 180.02562 * 8 7 5 10 10 H 1.09007 * 112.78705 * 75.80823 * 9 8 7 11 11 C 1.53506 * 113.47762 * 206.61781 * 9 8 7 12 12 C 1.53518 * 83.57441 * 140.79307 * 11 9 8 13 13 N 1.47475 * 113.47524 * 305.00169 * 9 8 7 14 14 C 1.46906 * 111.00135 * 106.52642 * 13 9 8 15 15 C 1.50703 * 109.47109 * 187.49657 * 14 13 9 16 16 O 1.21296 * 119.99996 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99978 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99848 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00405 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99358 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00464 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99431 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46988 * 60.00440 * 22 20 18 24 24 H 1.48496 * 109.47065 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47452 * 300.00298 * 22 20 18 26 26 O 1.34916 * 108.02152 * 0.24015 * 4 3 2 27 27 C 1.33924 * 109.38443 * 359.60083 * 26 4 3 28 28 C 1.50705 * 125.61248 * 180.12358 * 27 26 4 29 29 H 1.09003 * 109.46955 * 90.02402 * 1 2 3 30 30 H 1.09000 * 109.47028 * 210.02142 * 1 2 3 31 31 H 1.08997 * 109.47451 * 330.02578 * 1 2 3 32 32 H 1.07999 * 126.65094 * 0.02562 * 3 2 1 33 33 H 0.96998 * 120.00185 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.47312 * 59.99974 * 8 7 5 35 35 H 1.09003 * 109.47066 * 300.00400 * 8 7 5 36 36 H 1.08996 * 114.17352 * 27.14665 * 11 9 8 37 37 H 1.09000 * 114.34458 * 254.44937 * 11 9 8 38 38 H 1.09001 * 113.47541 * 219.21361 * 12 11 9 39 39 H 1.08993 * 113.53310 * 88.75610 * 12 11 9 40 40 H 1.08992 * 109.47459 * 307.49575 * 14 13 9 41 41 H 1.09004 * 109.47040 * 67.49726 * 14 13 9 42 42 H 0.97002 * 119.99767 * 359.97438 * 17 15 14 43 43 H 0.96997 * 119.99770 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.47162 * 270.32644 * 28 27 26 45 45 H 1.09000 * 109.46871 * 30.32936 * 28 27 26 46 46 H 1.09001 * 109.46785 * 150.32208 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8379 1.4942 -0.0013 6 8 4.7471 2.7078 -0.0019 7 7 6.0521 0.9093 -0.0013 8 6 7.2626 1.7344 -0.0015 9 6 8.4965 0.8297 -0.0021 10 1 8.6910 0.3816 -0.9766 11 6 9.7342 1.4831 0.6285 12 6 9.9659 0.0808 1.2086 13 7 8.5119 -0.1437 1.1057 14 6 8.2215 -1.4992 0.6195 15 6 8.0638 -2.4309 1.7935 16 8 8.1812 -2.0072 2.9240 17 7 7.7924 -3.7348 1.5873 18 6 7.6484 -4.5822 2.6553 19 1 7.7529 -4.2051 3.6619 20 6 7.3680 -5.9264 2.4426 21 7 7.2403 -6.3853 1.2179 22 14 7.1725 -7.0813 3.8979 23 1 6.0539 -6.6126 4.7549 24 1 6.8784 -8.4514 3.4065 25 1 8.4290 -7.0977 4.6891 26 8 3.5857 -0.6804 -0.0063 27 6 2.3097 -1.0870 -0.0006 28 6 1.8455 -2.5207 -0.0015 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 2.0266 2.1625 0.0004 33 1 6.1245 -0.0580 -0.0012 34 1 7.2735 2.3638 0.8884 35 1 7.2733 2.3636 -0.8916 36 1 9.5059 2.2430 1.3757 37 1 10.4905 1.7994 -0.0899 38 1 10.3321 0.0906 2.2352 39 1 10.5525 -0.5678 0.5581 40 1 7.2993 -1.4872 0.0388 41 1 9.0426 -1.8432 -0.0096 42 1 7.6981 -4.0735 0.6832 43 1 7.0449 -7.3237 1.0695 44 1 1.7338 -2.8658 -1.0294 45 1 2.5802 -3.1408 0.5121 46 1 0.8868 -2.5925 0.5122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754480767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:16 Heat of formation + Delta-G solvation = -22.875303 kcal Electronic energy + Delta-G solvation = -29066.460468 eV Core-core repulsion = 24959.014786 eV Total energy + Delta-G solvation = -4107.445682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.75891 -40.50325 -39.13840 -37.76672 -34.85948 -34.29450 -33.91403 -32.08775 -31.40260 -30.71209 -29.06993 -28.51473 -26.19524 -25.85528 -23.78438 -23.37680 -21.99636 -21.17258 -19.99183 -19.45748 -19.30238 -17.96185 -17.92379 -16.58435 -16.25602 -16.08768 -15.82846 -15.55635 -15.02878 -14.91726 -14.55775 -14.30798 -13.91735 -13.80657 -13.74604 -13.56039 -13.29870 -13.12067 -12.95181 -12.79696 -12.72791 -12.45097 -12.27392 -12.00874 -11.66418 -11.63164 -11.55382 -11.35460 -11.08059 -10.89789 -10.64136 -10.46074 -10.23256 -10.20686 -9.76312 -9.50990 -9.15049 -8.85223 -8.40228 -8.24343 -7.97977 -6.43528 -3.84157 1.04134 2.21818 2.59989 3.12375 3.18138 3.21078 3.23788 3.28454 3.85525 3.91861 4.19848 4.38860 4.53975 4.68707 4.70622 4.76289 4.95213 4.96774 5.10140 5.16798 5.27471 5.30078 5.32645 5.35892 5.41490 5.47255 5.57044 5.58990 5.60283 5.64582 5.72934 5.76881 5.83059 5.84694 5.93704 5.98078 6.15056 6.20798 6.31208 6.39531 6.50840 6.86131 7.13070 7.45492 7.53175 8.03734 8.06288 8.60081 9.16623 9.52136 10.04750 10.74145 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007428 B = 0.004230 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3768.564581 B = 6617.093936 C = 9917.942205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.201 4.201 3 C -0.115 4.115 4 C -0.081 4.081 5 C 0.605 3.395 6 O -0.529 6.529 7 N -0.709 5.709 8 C 0.140 3.860 9 C 0.002 3.998 10 H 0.084 0.916 11 C -0.132 4.132 12 C 0.005 3.995 13 N -0.433 5.433 14 C 0.007 3.993 15 C 0.446 3.554 16 O -0.572 6.572 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 O -0.156 6.156 27 C 0.028 3.972 28 C -0.083 4.083 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.158 0.842 33 H 0.407 0.593 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 11.193 -8.821 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.202 4.202 3 C -0.135 4.135 4 C -0.133 4.133 5 C 0.391 3.609 6 O -0.409 6.409 7 N -0.360 5.360 8 C 0.017 3.983 9 C -0.108 4.108 10 H 0.102 0.898 11 C -0.170 4.170 12 C -0.123 4.123 13 N -0.156 5.156 14 C -0.125 4.125 15 C 0.231 3.769 16 O -0.455 6.455 17 N -0.203 5.203 18 C -0.428 4.428 19 H 0.119 0.881 20 C -0.178 4.178 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 O -0.052 6.052 27 C -0.025 4.025 28 C -0.139 4.139 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.176 0.824 33 H 0.243 0.757 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.568 12.002 -7.532 15.618 hybrid contribution 0.255 -1.619 -0.639 1.759 sum -6.313 10.383 -8.170 14.643 Atomic orbital electron populations 1.20166 0.88676 1.02713 1.02059 1.20174 0.97454 0.91732 1.10851 1.21754 0.90488 1.00288 1.00999 1.21938 0.96115 0.80501 1.14730 1.16515 0.81297 0.86270 0.76781 1.90851 1.86165 1.12220 1.51616 1.45853 1.05156 1.11310 1.73712 1.21403 0.81505 0.92807 1.02610 1.23793 0.95344 0.95698 0.95942 0.89846 1.23154 0.96118 0.97536 1.00232 1.23738 0.90436 0.95304 1.02872 1.68870 1.15170 1.03223 1.28319 1.22572 1.01406 0.91298 0.97254 1.19585 0.84671 0.82944 0.89719 1.90539 1.55203 1.76086 1.23684 1.41849 1.62342 1.06409 1.09657 1.19639 1.45200 0.88993 0.88921 0.88055 1.25226 0.97337 0.97585 0.97649 1.69601 1.49059 1.16070 1.19691 0.85945 0.79068 0.78648 0.80739 1.19908 1.20963 1.19922 1.84060 1.28935 1.21612 1.70585 1.22662 0.80522 0.97310 1.02003 1.20466 1.02276 0.87159 1.03973 0.91452 0.91466 0.91445 0.82436 0.75658 0.90354 0.90866 0.88500 0.90353 0.89099 0.91359 0.90195 0.92054 0.77609 0.91868 0.89525 0.89437 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.17 36.01 0.37 -0.31 16 2 C -0.20 -2.44 6.14 -104.93 -0.64 -3.08 16 3 C -0.11 -1.56 10.57 -39.39 -0.42 -1.98 16 4 C -0.08 -1.24 7.13 -36.79 -0.26 -1.51 16 5 C 0.60 9.67 7.79 -12.86 -0.10 9.57 16 6 O -0.53 -9.40 16.87 5.19 0.09 -9.31 16 7 N -0.71 -10.31 5.46 -61.62 -0.34 -10.65 16 8 C 0.14 1.77 5.81 -4.04 -0.02 1.74 16 9 C 0.00 0.03 3.25 -71.44 -0.23 -0.20 16 10 H 0.08 0.86 7.91 -51.92 -0.41 0.45 16 11 C -0.13 -1.37 8.00 -26.20 -0.21 -1.58 16 12 C 0.01 0.07 7.69 -7.55 -0.06 0.02 16 13 N -0.43 -6.90 5.39 -237.96 -1.28 -8.18 16 14 C 0.01 0.12 5.04 -4.97 -0.03 0.09 16 15 C 0.45 10.46 7.83 -10.98 -0.09 10.38 16 16 O -0.57 -15.70 16.01 5.54 0.09 -15.61 16 17 N -0.57 -14.12 5.29 -10.96 -0.06 -14.18 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 22 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 O -0.16 -2.41 10.40 5.01 0.05 -2.36 16 27 C 0.03 0.36 7.31 -35.41 -0.26 0.10 16 28 C -0.08 -0.81 10.21 36.01 0.37 -0.45 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.49 7.13 -51.93 -0.37 0.12 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.41 6.03 5.95 -40.82 -0.24 5.79 16 34 H 0.08 1.06 7.88 -51.93 -0.41 0.65 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.07 0.85 7.44 -51.93 -0.39 0.47 16 40 H 0.08 1.25 6.25 -51.93 -0.32 0.92 16 41 H 0.06 0.93 7.35 -51.93 -0.38 0.55 16 42 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 43 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 0.70 7.13 -51.93 -0.37 0.33 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -34.04 388.84 -8.23 -42.27 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -6.52 Total: 14.74 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.82 Total: 4.94 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.95 Total: -56.35 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: 0.23 Total: -27.29 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.04 -8.23 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754480767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.397 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds