Wall clock time and date at job start Tue Mar 31 2020 19:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40366 * 126.43904 * 2 1 4 4 C 1.36548 * 106.70499 * 180.02562 * 3 2 1 5 5 C 1.46661 * 125.98756 * 179.97438 * 4 3 2 6 6 O 1.21700 * 119.99669 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00012 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99945 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47298 * 180.02562 * 8 7 5 10 10 H 1.09007 * 112.78705 * 75.80823 * 9 8 7 11 11 C 1.53506 * 113.47762 * 206.61781 * 9 8 7 12 12 C 1.53518 * 83.57441 * 140.79307 * 11 9 8 13 13 N 1.47475 * 113.47524 * 305.00169 * 9 8 7 14 14 C 1.46906 * 111.00135 * 106.52642 * 13 9 8 15 15 C 1.50703 * 109.47109 * 187.49657 * 14 13 9 16 16 O 1.21296 * 119.99996 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99978 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99848 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00405 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99358 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00464 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99431 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46988 * 60.00440 * 22 20 18 24 24 H 1.48496 * 109.47065 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47452 * 300.00298 * 22 20 18 26 26 O 1.34916 * 108.02152 * 0.24015 * 4 3 2 27 27 C 1.33924 * 109.38443 * 359.60083 * 26 4 3 28 28 C 1.50705 * 125.61248 * 180.12358 * 27 26 4 29 29 H 1.09003 * 109.46955 * 90.02402 * 1 2 3 30 30 H 1.09000 * 109.47028 * 210.02142 * 1 2 3 31 31 H 1.08997 * 109.47451 * 330.02578 * 1 2 3 32 32 H 1.07999 * 126.65094 * 0.02562 * 3 2 1 33 33 H 0.96998 * 120.00185 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.47312 * 59.99974 * 8 7 5 35 35 H 1.09003 * 109.47066 * 300.00400 * 8 7 5 36 36 H 1.08996 * 114.17352 * 27.14665 * 11 9 8 37 37 H 1.09000 * 114.34458 * 254.44937 * 11 9 8 38 38 H 1.09001 * 113.47541 * 219.21361 * 12 11 9 39 39 H 1.08993 * 113.53310 * 88.75610 * 12 11 9 40 40 H 1.08992 * 109.47459 * 307.49575 * 14 13 9 41 41 H 1.09004 * 109.47040 * 67.49726 * 14 13 9 42 42 H 0.97002 * 119.99767 * 359.97438 * 17 15 14 43 43 H 0.96997 * 119.99770 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.47162 * 270.32644 * 28 27 26 45 45 H 1.09000 * 109.46871 * 30.32936 * 28 27 26 46 46 H 1.09001 * 109.46785 * 150.32208 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8379 1.4942 -0.0013 6 8 4.7471 2.7078 -0.0019 7 7 6.0521 0.9093 -0.0013 8 6 7.2626 1.7344 -0.0015 9 6 8.4965 0.8297 -0.0021 10 1 8.6910 0.3816 -0.9766 11 6 9.7342 1.4831 0.6285 12 6 9.9659 0.0808 1.2086 13 7 8.5119 -0.1437 1.1057 14 6 8.2215 -1.4992 0.6195 15 6 8.0638 -2.4309 1.7935 16 8 8.1812 -2.0072 2.9240 17 7 7.7924 -3.7348 1.5873 18 6 7.6484 -4.5822 2.6553 19 1 7.7529 -4.2051 3.6619 20 6 7.3680 -5.9264 2.4426 21 7 7.2403 -6.3853 1.2179 22 14 7.1725 -7.0813 3.8979 23 1 6.0539 -6.6126 4.7549 24 1 6.8784 -8.4514 3.4065 25 1 8.4290 -7.0977 4.6891 26 8 3.5857 -0.6804 -0.0063 27 6 2.3097 -1.0870 -0.0006 28 6 1.8455 -2.5207 -0.0015 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 2.0266 2.1625 0.0004 33 1 6.1245 -0.0580 -0.0012 34 1 7.2735 2.3638 0.8884 35 1 7.2733 2.3636 -0.8916 36 1 9.5059 2.2430 1.3757 37 1 10.4905 1.7994 -0.0899 38 1 10.3321 0.0906 2.2352 39 1 10.5525 -0.5678 0.5581 40 1 7.2993 -1.4872 0.0388 41 1 9.0426 -1.8432 -0.0096 42 1 7.6981 -4.0735 0.6832 43 1 7.0449 -7.3237 1.0695 44 1 1.7338 -2.8658 -1.0294 45 1 2.5802 -3.1408 0.5121 46 1 0.8868 -2.5925 0.5122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754480767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:16 Heat of formation + Delta-G solvation = -48.991548 kcal Electronic energy + Delta-G solvation = -29067.592953 eV Core-core repulsion = 24959.014786 eV Total energy + Delta-G solvation = -4108.578167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.80642 -41.64508 -40.38946 -39.57585 -36.01799 -35.88429 -35.29636 -33.33849 -33.06842 -32.09582 -30.05735 -29.39473 -27.56499 -27.12952 -25.38992 -24.38757 -23.05448 -22.25813 -21.14715 -21.00591 -20.46447 -19.92512 -19.02671 -17.78754 -17.66565 -17.28383 -17.13538 -16.73594 -16.51947 -16.26767 -16.06144 -15.60317 -15.54753 -15.08398 -14.81750 -14.62549 -14.25671 -14.15334 -14.06977 -13.97039 -13.70510 -13.63987 -13.53636 -13.12563 -13.01118 -12.93835 -12.65913 -12.48959 -12.46054 -12.37862 -12.14953 -11.98398 -11.79822 -11.51010 -11.35532 -10.78092 -10.40153 -10.28749 -10.01442 -9.75256 -9.40469 -8.46780 -5.95376 -0.07003 1.23297 1.38225 1.40534 1.50933 1.56041 1.99599 2.03167 2.09419 2.28007 2.78029 3.18467 3.30579 3.50574 3.55040 3.75096 3.76584 3.81871 4.00766 4.11291 4.22512 4.26856 4.30399 4.38226 4.42213 4.47090 4.59575 4.61598 4.66727 4.70526 4.81531 4.84049 4.87813 4.99405 5.03341 5.05905 5.07216 5.15182 5.23406 5.38796 5.41102 5.54368 5.82480 5.90913 6.08733 6.28689 6.60275 6.87512 7.12868 7.55307 8.12401 8.70236 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007428 B = 0.004230 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3768.564581 B = 6617.093936 C = 9917.942205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.200 4.200 3 C -0.115 4.115 4 C -0.113 4.113 5 C 0.601 3.399 6 O -0.556 6.556 7 N -0.707 5.707 8 C 0.138 3.862 9 C 0.013 3.987 10 H 0.110 0.890 11 C -0.110 4.110 12 C -0.003 4.003 13 N -0.472 5.472 14 C 0.022 3.978 15 C 0.441 3.559 16 O -0.618 6.618 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.074 0.926 20 C -0.007 4.007 21 N -0.917 5.917 22 Si 0.988 3.012 23 H -0.274 1.274 24 H -0.268 1.268 25 H -0.274 1.274 26 O -0.178 6.178 27 C 0.014 3.986 28 C -0.081 4.081 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.168 0.832 33 H 0.405 0.595 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 10.980 -10.282 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.201 4.201 3 C -0.135 4.135 4 C -0.165 4.165 5 C 0.388 3.612 6 O -0.437 6.437 7 N -0.357 5.357 8 C 0.015 3.985 9 C -0.097 4.097 10 H 0.128 0.872 11 C -0.148 4.148 12 C -0.132 4.132 13 N -0.195 5.195 14 C -0.110 4.110 15 C 0.229 3.771 16 O -0.504 6.504 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.092 0.908 20 C -0.208 4.208 21 N -0.558 5.558 22 Si 0.812 3.188 23 H -0.199 1.199 24 H -0.192 1.192 25 H -0.199 1.199 26 O -0.074 6.074 27 C -0.039 4.039 28 C -0.137 4.137 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.185 0.815 33 H 0.241 0.759 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.124 0.876 45 H 0.088 0.912 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.214 11.784 -9.027 16.504 hybrid contribution 0.429 -1.545 -0.176 1.613 sum -6.784 10.239 -9.202 15.348 Atomic orbital electron populations 1.20297 0.85869 1.03927 1.03418 1.20604 0.99250 0.90621 1.09614 1.22077 0.90309 1.01339 0.99812 1.21992 0.96587 0.80785 1.17086 1.16666 0.81901 0.86109 0.76479 1.90816 1.86618 1.13093 1.53195 1.45919 1.05456 1.11309 1.72973 1.21564 0.81133 0.92914 1.02918 1.23876 0.95413 0.94419 0.95972 0.87247 1.23096 0.95882 0.95479 1.00299 1.23835 0.89303 0.97981 1.02079 1.68831 1.16910 1.02853 1.30884 1.22425 1.03220 0.90912 0.94457 1.20708 0.82432 0.82987 0.91022 1.90501 1.56739 1.76887 1.26287 1.41904 1.62839 1.07005 1.09241 1.19570 1.47733 0.90363 0.88726 0.90770 1.25947 0.96249 0.98257 1.00303 1.69653 1.48534 1.16722 1.20893 0.85062 0.78797 0.77214 0.77712 1.19904 1.19192 1.19884 1.84031 1.30468 1.21676 1.71265 1.23410 0.79932 0.99007 1.01512 1.20640 1.02786 0.84944 1.05311 0.89905 0.89862 0.90662 0.81459 0.75924 0.91696 0.88867 0.88729 0.86704 0.91677 0.89884 0.88655 0.89427 0.77050 0.91249 0.87624 0.91160 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.17 71.24 0.72 -0.42 16 2 C -0.20 -4.62 6.14 -20.06 -0.12 -4.74 16 3 C -0.11 -3.12 10.57 22.39 0.24 -2.88 16 4 C -0.11 -3.56 7.13 24.08 0.17 -3.39 16 5 C 0.60 19.61 7.79 86.44 0.67 20.28 16 6 O -0.56 -20.07 16.87 -4.35 -0.07 -20.14 16 7 N -0.71 -20.56 5.46 -467.09 -2.55 -23.11 16 8 C 0.14 3.31 5.81 86.38 0.50 3.82 16 9 C 0.01 0.27 3.25 42.18 0.14 0.41 16 10 H 0.11 1.84 7.91 -2.38 -0.02 1.82 16 11 C -0.11 -1.99 8.00 30.94 0.25 -1.74 16 12 C 0.00 -0.09 7.69 83.57 0.64 0.56 16 13 N -0.47 -14.72 5.39 -906.76 -4.89 -19.61 16 14 C 0.02 0.73 5.04 85.56 0.43 1.16 16 15 C 0.44 21.22 7.83 87.66 0.69 21.91 16 16 O -0.62 -35.35 16.01 -3.08 -0.05 -35.40 16 17 N -0.57 -29.29 5.29 -306.98 -1.62 -30.91 16 18 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 19 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 20 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 21 N -0.92 -48.57 13.05 21.66 0.28 -48.28 16 22 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 O -0.18 -5.61 10.40 -5.00 -0.05 -5.66 16 27 C 0.01 0.35 7.31 24.97 0.18 0.53 16 28 C -0.08 -1.49 10.21 71.24 0.73 -0.77 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 0.95 7.13 -2.39 -0.02 0.93 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.40 12.05 5.95 -92.71 -0.55 11.50 16 34 H 0.06 1.74 7.88 -2.38 -0.02 1.72 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 1.79 7.94 -2.39 -0.02 1.77 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 1.90 7.44 -2.39 -0.02 1.89 16 40 H 0.10 2.90 6.25 -2.39 -0.01 2.88 16 41 H 0.09 2.49 7.35 -2.38 -0.02 2.47 16 42 H 0.40 19.08 7.90 -92.71 -0.73 18.34 16 43 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 44 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.12 1.51 7.13 -2.39 -0.02 1.50 16 Total: -1.00 -76.78 388.84 -0.66 -77.44 By element: Atomic # 1 Polarization: 44.65 SS G_CDS: -0.26 Total: 44.39 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 6.52 Total: 16.59 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -8.78 Total: -121.91 kcal Atomic # 8 Polarization: -61.02 SS G_CDS: -0.17 Total: -61.19 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -76.78 -0.66 -77.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754480767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.448 kcal (2) G-P(sol) polarization free energy of solvation -76.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds