Wall clock time and date at job start Tue Mar 31 2020 19:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40362 * 126.64896 * 2 1 4 4 C 1.35126 * 107.11793 * 180.29821 * 3 2 1 5 5 O 1.33933 * 108.76450 * 359.74433 * 4 3 2 6 6 C 1.34908 * 109.38667 * 359.97438 * 5 4 3 7 7 C 1.46657 * 125.99280 * 179.97438 * 6 5 4 8 8 O 1.21692 * 120.00711 * 180.02562 * 7 6 5 9 9 N 1.34783 * 119.99548 * 0.02938 * 7 6 5 10 10 C 1.46502 * 119.99816 * 179.97438 * 9 7 6 11 11 C 1.52997 * 110.28478 * 299.32423 * 10 9 7 12 12 C 1.54255 * 110.32264 * 61.45219 * 10 9 7 13 13 C 1.54380 * 105.05855 * 118.89986 * 12 10 9 14 14 N 1.48568 * 104.59347 * 336.14340 * 13 12 10 15 15 C 1.46903 * 110.99947 * 159.04656 * 14 13 12 16 16 C 1.50696 * 109.47177 * 69.86960 * 15 14 13 17 17 O 1.21292 * 120.00262 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99627 * 179.97438 * 16 15 14 19 19 C 1.37090 * 119.99714 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00232 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99992 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00236 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00316 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00267 * 23 21 19 26 26 H 1.48504 * 109.46913 * 150.00066 * 23 21 19 27 27 C 1.48552 * 104.22179 * 39.48610 * 14 13 12 28 28 H 1.09003 * 109.47090 * 270.13737 * 1 2 3 29 29 H 1.09003 * 109.46781 * 30.13360 * 1 2 3 30 30 H 1.08996 * 109.47178 * 150.13127 * 1 2 3 31 31 H 1.08005 * 126.44496 * 0.04113 * 3 2 1 32 32 H 1.08005 * 125.61907 * 179.71471 * 4 3 2 33 33 H 0.97000 * 120.00275 * 359.97438 * 9 7 6 34 34 H 1.09008 * 109.47282 * 180.67547 * 11 10 9 35 35 H 1.09000 * 109.47317 * 300.67148 * 11 10 9 36 36 H 1.08995 * 109.47433 * 60.67547 * 11 10 9 37 37 H 1.08994 * 110.32322 * 0.02562 * 12 10 9 38 38 H 1.09004 * 110.32529 * 237.78686 * 12 10 9 39 39 H 1.09001 * 110.41214 * 217.36943 * 13 12 10 40 40 H 1.09002 * 110.51512 * 94.97150 * 13 12 10 41 41 H 1.09005 * 109.46883 * 309.87129 * 15 14 13 42 42 H 1.09002 * 109.46817 * 189.87579 * 15 14 13 43 43 H 0.96999 * 120.00048 * 0.02562 * 18 16 15 44 44 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.41488 * 79.29220 * 27 14 13 46 46 H 1.08997 * 110.41469 * 201.73681 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6183 0.6744 -0.0067 5 8 3.6004 -0.6648 -0.0051 6 6 2.3220 -1.0956 0.0031 7 6 1.8841 -2.4952 0.0068 8 8 0.6967 -2.7614 0.0140 9 7 2.7970 -3.4869 0.0024 10 6 2.3597 -4.8851 0.0066 11 6 1.5382 -5.1801 1.2632 12 6 1.5322 -5.1914 -1.2587 13 6 2.3212 -6.2943 -1.9966 14 7 3.7194 -6.1372 -1.5195 15 6 4.4868 -7.3734 -1.7220 16 6 4.7196 -7.5844 -3.1959 17 8 4.2891 -6.7836 -3.9987 18 7 5.4071 -8.6626 -3.6219 19 6 5.6193 -8.8544 -4.9626 20 1 5.2360 -8.1413 -5.6774 21 6 6.3277 -9.9662 -5.4019 22 7 6.5307 -10.1503 -6.6871 23 14 6.9913 -11.1992 -4.1655 24 1 8.3607 -10.7988 -3.7534 25 1 6.1054 -11.2313 -2.9741 26 1 7.0354 -12.5476 -4.7860 27 6 3.5791 -5.8285 -0.0732 28 1 -0.3633 0.0025 1.0277 29 1 -0.3633 0.8888 -0.5159 30 1 -0.3633 -0.8911 -0.5118 31 1 2.0308 2.1595 0.0006 32 1 4.5047 1.2916 -0.0129 33 1 3.7435 -3.2748 -0.0036 34 1 1.2301 -6.2257 1.2587 35 1 2.1440 -4.9837 2.1478 36 1 0.6552 -4.5412 1.2783 37 1 1.4519 -4.3017 -1.8831 38 1 0.5414 -5.5539 -0.9846 39 1 2.2682 -6.1430 -3.0747 40 1 1.9380 -7.2800 -1.7324 41 1 3.9286 -8.2179 -1.3178 42 1 5.4459 -7.2935 -1.2104 43 1 5.7517 -9.3029 -2.9798 44 1 7.0255 -10.9262 -6.9937 45 1 3.3919 -6.7404 0.4938 46 1 4.4730 -5.3265 0.2969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754664297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:59 Heat of formation + Delta-G solvation = -38.165986 kcal Electronic energy + Delta-G solvation = -28950.709046 eV Core-core repulsion = 24842.600310 eV Total energy + Delta-G solvation = -4108.108735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.95071 -40.44477 -38.83456 -37.69840 -34.96228 -34.18363 -33.81212 -32.02303 -31.62355 -30.45916 -29.58600 -27.77561 -27.74097 -25.43656 -23.89671 -23.28624 -21.76936 -21.43559 -20.21623 -19.66999 -19.26521 -18.35464 -18.20603 -16.62508 -16.53437 -16.30715 -15.97160 -15.40571 -14.89767 -14.75072 -14.66481 -14.38935 -14.19599 -13.77005 -13.42712 -13.32355 -13.27918 -13.15702 -13.06830 -12.77741 -12.65075 -12.45077 -12.33267 -12.03678 -12.00782 -11.89992 -11.59143 -11.22628 -11.07535 -11.03023 -10.70926 -10.59778 -10.06823 -9.97446 -9.96433 -9.55340 -9.29967 -8.81382 -8.63007 -8.18750 -8.11641 -6.30466 -3.81787 0.83664 2.07207 2.46478 2.99224 3.01959 3.05412 3.06489 3.14708 3.74200 3.94462 4.10460 4.27518 4.43382 4.50683 4.64381 4.71305 4.82580 4.96162 5.19966 5.21195 5.25858 5.28047 5.31987 5.42879 5.45254 5.49315 5.52073 5.59380 5.61802 5.70446 5.71754 5.77500 5.88794 5.91674 5.95233 6.04823 6.16386 6.21367 6.40202 6.44038 6.60430 6.99830 7.05380 7.35849 7.58844 7.96520 8.15049 8.60967 8.96121 9.43087 9.84383 10.82736 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020747 B = 0.002319 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.296475 B =12071.660905 C =12567.841820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.089 4.089 3 C -0.227 4.227 4 C -0.004 4.004 5 O -0.162 6.162 6 C -0.084 4.084 7 C 0.606 3.394 8 O -0.516 6.516 9 N -0.702 5.702 10 C 0.173 3.827 11 C -0.158 4.158 12 C -0.119 4.119 13 C 0.035 3.965 14 N -0.483 5.483 15 C 0.031 3.969 16 C 0.454 3.546 17 O -0.558 6.558 18 N -0.592 5.592 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.277 1.277 27 C 0.028 3.972 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.210 0.790 33 H 0.406 0.594 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.060 0.940 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 16.608 20.550 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.246 4.246 4 C -0.074 4.074 5 O -0.058 6.058 6 C -0.136 4.136 7 C 0.392 3.608 8 O -0.394 6.394 9 N -0.352 5.352 10 C 0.087 3.913 11 C -0.216 4.216 12 C -0.158 4.158 13 C -0.093 4.093 14 N -0.207 5.207 15 C -0.101 4.101 16 C 0.239 3.761 17 O -0.439 6.439 18 N -0.232 5.232 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.202 1.202 27 C -0.101 4.101 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.226 0.774 33 H 0.242 0.758 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.202 0.798 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.995 16.990 19.517 27.083 hybrid contribution 0.900 -1.411 1.225 2.075 sum -7.094 15.579 20.742 26.894 Atomic orbital electron populations 1.20421 0.88207 1.03693 1.02751 1.20649 0.97688 0.91001 0.99884 1.21748 0.92484 1.00163 1.10219 1.24367 0.99980 0.80642 1.02383 1.84075 1.28376 1.22693 1.70624 1.21942 0.81495 0.94929 1.15216 1.16468 0.85835 0.81665 0.76793 1.90815 1.15665 1.82184 1.50778 1.46023 1.09904 1.05348 1.73958 1.21066 0.94309 0.79788 0.96106 1.22206 1.01104 1.02482 0.95804 1.22700 0.98180 0.99790 0.95133 1.23241 0.86929 0.96534 1.02572 1.65176 1.12669 1.31979 1.10858 1.22107 0.99462 0.91426 0.97103 1.19576 0.83810 0.83531 0.89133 1.90555 1.52922 1.44843 1.55577 1.42203 1.50566 1.22281 1.08182 1.19419 1.33028 1.09358 0.81398 0.86296 1.25039 0.97552 0.97548 0.96088 1.69623 1.40444 1.29285 1.12864 0.86672 0.79820 0.81812 0.81064 1.19627 1.19566 1.20211 1.23434 0.97325 0.98162 0.91143 0.90928 0.91563 0.89356 0.82742 0.77373 0.75804 0.91485 0.92504 0.90147 0.90443 0.90480 0.87998 0.94126 0.92988 0.89114 0.79768 0.91640 0.92199 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.81 36.01 0.35 -0.53 16 2 C -0.09 -0.94 6.20 -104.43 -0.65 -1.59 16 3 C -0.23 -1.87 10.83 -39.89 -0.43 -2.30 16 4 C 0.00 -0.03 12.08 29.63 0.36 0.33 16 5 O -0.16 -1.68 10.40 5.01 0.05 -1.63 16 6 C -0.08 -0.98 7.13 -36.80 -0.26 -1.24 16 7 C 0.61 7.64 6.95 -12.86 -0.09 7.55 16 8 O -0.52 -7.31 12.02 5.20 0.06 -7.25 16 9 N -0.70 -8.02 5.09 -47.62 -0.24 -8.26 16 10 C 0.17 1.99 1.01 -130.44 -0.13 1.86 16 11 C -0.16 -1.58 8.17 37.16 0.30 -1.27 16 12 C -0.12 -1.61 5.48 -25.35 -0.14 -1.75 16 13 C 0.03 0.55 5.80 -2.18 -0.01 0.54 16 14 N -0.48 -7.55 5.06 -231.40 -1.17 -8.72 16 15 C 0.03 0.51 5.30 -4.98 -0.03 0.48 16 16 C 0.45 10.27 7.58 -10.98 -0.08 10.18 16 17 O -0.56 -14.91 14.42 5.55 0.08 -14.83 16 18 N -0.59 -14.07 5.09 -10.96 -0.06 -14.13 16 19 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 20 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 23 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.03 0.32 5.69 -2.18 -0.01 0.31 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.98 6.45 -51.93 -0.34 0.64 16 31 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.21 0.70 8.06 -52.48 -0.42 0.27 16 33 H 0.41 4.20 8.02 -40.82 -0.33 3.87 16 34 H 0.07 0.60 8.13 -51.92 -0.42 0.18 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.92 6.30 -51.93 -0.33 0.60 16 37 H 0.08 1.19 7.31 -51.93 -0.38 0.81 16 38 H 0.08 0.96 7.71 -51.93 -0.40 0.56 16 39 H 0.10 1.95 6.91 -51.93 -0.36 1.59 16 40 H 0.04 0.60 7.82 -51.93 -0.41 0.19 16 41 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 42 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 43 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.06 0.60 7.71 -51.93 -0.40 0.20 16 46 H 0.09 0.87 7.75 -51.93 -0.40 0.47 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -34.45 374.32 -7.14 -41.59 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -6.50 Total: 13.20 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.07 Total: 4.85 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.70 Total: -56.18 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.19 Total: -23.71 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.45 -7.14 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754664297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.422 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds