Wall clock time and date at job start Tue Mar 31 2020 19:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40362 * 126.64896 * 2 1 4 4 C 1.35126 * 107.11793 * 180.29821 * 3 2 1 5 5 O 1.33933 * 108.76450 * 359.74433 * 4 3 2 6 6 C 1.34908 * 109.38667 * 359.97438 * 5 4 3 7 7 C 1.46657 * 125.99280 * 179.97438 * 6 5 4 8 8 O 1.21692 * 120.00711 * 180.02562 * 7 6 5 9 9 N 1.34783 * 119.99548 * 0.02938 * 7 6 5 10 10 C 1.46502 * 119.99816 * 179.97438 * 9 7 6 11 11 C 1.52997 * 110.28478 * 299.32423 * 10 9 7 12 12 C 1.54255 * 110.32264 * 61.45219 * 10 9 7 13 13 C 1.54380 * 105.05855 * 118.89986 * 12 10 9 14 14 N 1.48568 * 104.59347 * 336.14340 * 13 12 10 15 15 C 1.46903 * 110.99947 * 159.04656 * 14 13 12 16 16 C 1.50696 * 109.47177 * 69.86960 * 15 14 13 17 17 O 1.21292 * 120.00262 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99627 * 179.97438 * 16 15 14 19 19 C 1.37090 * 119.99714 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00232 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99992 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00236 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00316 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00267 * 23 21 19 26 26 H 1.48504 * 109.46913 * 150.00066 * 23 21 19 27 27 C 1.48552 * 104.22179 * 39.48610 * 14 13 12 28 28 H 1.09003 * 109.47090 * 270.13737 * 1 2 3 29 29 H 1.09003 * 109.46781 * 30.13360 * 1 2 3 30 30 H 1.08996 * 109.47178 * 150.13127 * 1 2 3 31 31 H 1.08005 * 126.44496 * 0.04113 * 3 2 1 32 32 H 1.08005 * 125.61907 * 179.71471 * 4 3 2 33 33 H 0.97000 * 120.00275 * 359.97438 * 9 7 6 34 34 H 1.09008 * 109.47282 * 180.67547 * 11 10 9 35 35 H 1.09000 * 109.47317 * 300.67148 * 11 10 9 36 36 H 1.08995 * 109.47433 * 60.67547 * 11 10 9 37 37 H 1.08994 * 110.32322 * 0.02562 * 12 10 9 38 38 H 1.09004 * 110.32529 * 237.78686 * 12 10 9 39 39 H 1.09001 * 110.41214 * 217.36943 * 13 12 10 40 40 H 1.09002 * 110.51512 * 94.97150 * 13 12 10 41 41 H 1.09005 * 109.46883 * 309.87129 * 15 14 13 42 42 H 1.09002 * 109.46817 * 189.87579 * 15 14 13 43 43 H 0.96999 * 120.00048 * 0.02562 * 18 16 15 44 44 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.41488 * 79.29220 * 27 14 13 46 46 H 1.08997 * 110.41469 * 201.73681 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6183 0.6744 -0.0067 5 8 3.6004 -0.6648 -0.0051 6 6 2.3220 -1.0956 0.0031 7 6 1.8841 -2.4952 0.0068 8 8 0.6967 -2.7614 0.0140 9 7 2.7970 -3.4869 0.0024 10 6 2.3597 -4.8851 0.0066 11 6 1.5382 -5.1801 1.2632 12 6 1.5322 -5.1914 -1.2587 13 6 2.3212 -6.2943 -1.9966 14 7 3.7194 -6.1372 -1.5195 15 6 4.4868 -7.3734 -1.7220 16 6 4.7196 -7.5844 -3.1959 17 8 4.2891 -6.7836 -3.9987 18 7 5.4071 -8.6626 -3.6219 19 6 5.6193 -8.8544 -4.9626 20 1 5.2360 -8.1413 -5.6774 21 6 6.3277 -9.9662 -5.4019 22 7 6.5307 -10.1503 -6.6871 23 14 6.9913 -11.1992 -4.1655 24 1 8.3607 -10.7988 -3.7534 25 1 6.1054 -11.2313 -2.9741 26 1 7.0354 -12.5476 -4.7860 27 6 3.5791 -5.8285 -0.0732 28 1 -0.3633 0.0025 1.0277 29 1 -0.3633 0.8888 -0.5159 30 1 -0.3633 -0.8911 -0.5118 31 1 2.0308 2.1595 0.0006 32 1 4.5047 1.2916 -0.0129 33 1 3.7435 -3.2748 -0.0036 34 1 1.2301 -6.2257 1.2587 35 1 2.1440 -4.9837 2.1478 36 1 0.6552 -4.5412 1.2783 37 1 1.4519 -4.3017 -1.8831 38 1 0.5414 -5.5539 -0.9846 39 1 2.2682 -6.1430 -3.0747 40 1 1.9380 -7.2800 -1.7324 41 1 3.9286 -8.2179 -1.3178 42 1 5.4459 -7.2935 -1.2104 43 1 5.7517 -9.3029 -2.9798 44 1 7.0255 -10.9262 -6.9937 45 1 3.3919 -6.7404 0.4938 46 1 4.4730 -5.3265 0.2969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754664297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:59 Heat of formation + Delta-G solvation = -66.161783 kcal Electronic energy + Delta-G solvation = -28951.923035 eV Core-core repulsion = 24842.600310 eV Total energy + Delta-G solvation = -4109.322724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.65943 -41.45520 -40.32675 -39.05253 -36.18099 -35.69041 -34.91012 -33.75973 -32.96773 -31.27100 -30.57021 -29.08125 -28.51055 -26.87964 -25.35032 -24.15433 -22.70390 -22.44543 -21.27942 -21.00899 -20.58780 -20.06866 -19.13404 -17.75223 -17.50612 -17.37992 -17.03223 -16.84439 -16.36051 -16.08581 -15.70410 -15.54078 -15.34726 -15.08033 -14.69990 -14.52610 -14.35643 -14.13819 -14.03480 -13.87824 -13.86113 -13.51149 -13.44249 -13.21778 -13.06782 -12.94630 -12.75781 -12.69619 -12.41480 -12.22187 -12.00995 -11.96127 -11.85794 -11.48046 -10.99226 -10.66253 -10.41123 -10.24281 -10.20781 -9.55218 -9.38297 -8.40561 -6.01465 0.05746 1.30285 1.36461 1.42206 1.45139 1.72535 1.97792 2.11729 2.23751 2.24442 2.64212 3.14564 3.22579 3.38517 3.70823 3.77533 3.83326 3.96521 3.98635 4.12387 4.22940 4.38697 4.39791 4.48472 4.54828 4.59371 4.63270 4.64169 4.74043 4.77295 4.79508 4.82096 4.87850 5.09653 5.12001 5.12860 5.21567 5.28603 5.43818 5.53235 5.53450 5.83687 5.86666 5.91186 6.01358 6.48943 6.60886 6.89774 7.07132 7.41094 7.99515 8.77321 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020747 B = 0.002319 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.296475 B =12071.660905 C =12567.841820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.099 4.099 3 C -0.237 4.237 4 C 0.009 3.991 5 O -0.173 6.173 6 C -0.119 4.119 7 C 0.601 3.399 8 O -0.541 6.541 9 N -0.698 5.698 10 C 0.175 3.825 11 C -0.149 4.149 12 C -0.112 4.112 13 C 0.038 3.962 14 N -0.510 5.510 15 C 0.043 3.957 16 C 0.451 3.549 17 O -0.609 6.609 18 N -0.593 5.593 19 C -0.327 4.327 20 H 0.052 0.948 21 C -0.018 4.018 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.256 1.256 25 H -0.229 1.229 26 H -0.276 1.276 27 C 0.035 3.965 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.181 0.819 32 H 0.252 0.748 33 H 0.411 0.589 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.127 0.873 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.089 0.911 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 16.259 24.937 30.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.256 4.256 4 C -0.060 4.060 5 O -0.069 6.069 6 C -0.170 4.170 7 C 0.389 3.611 8 O -0.422 6.422 9 N -0.349 5.349 10 C 0.089 3.911 11 C -0.208 4.208 12 C -0.151 4.151 13 C -0.090 4.090 14 N -0.234 5.234 15 C -0.088 4.088 16 C 0.239 3.761 17 O -0.493 6.493 18 N -0.235 5.235 19 C -0.456 4.456 20 H 0.070 0.930 21 C -0.216 4.216 22 N -0.577 5.577 23 Si 0.787 3.213 24 H -0.181 1.181 25 H -0.153 1.153 26 H -0.202 1.202 27 C -0.093 4.093 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.198 0.802 32 H 0.268 0.732 33 H 0.248 0.752 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.145 0.855 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.638 16.655 23.940 29.910 hybrid contribution 0.429 -1.090 -0.261 1.201 sum -6.209 15.565 23.679 29.009 Atomic orbital electron populations 1.20407 0.87927 1.03435 1.03097 1.21031 0.98312 0.91807 0.99046 1.22093 0.92338 1.00757 1.10380 1.25303 1.01429 0.79753 0.99494 1.84061 1.27723 1.24185 1.70941 1.21839 0.82401 0.94762 1.18032 1.16674 0.85687 0.82398 0.76379 1.90791 1.16577 1.82769 1.52036 1.46011 1.10046 1.05261 1.73610 1.21095 0.94430 0.79973 0.95577 1.22134 1.00276 1.03007 0.95344 1.22594 0.98850 0.97890 0.95737 1.23064 0.88064 0.97874 0.99973 1.65072 1.12264 1.31946 1.14116 1.22048 1.01948 0.93072 0.91742 1.20924 0.81400 0.81867 0.91946 1.90549 1.54273 1.46426 1.58044 1.42020 1.51400 1.23479 1.06589 1.18973 1.34555 1.09157 0.82898 0.92972 1.26153 0.97013 0.99675 0.98764 1.69815 1.41451 1.30508 1.15973 0.85340 0.79940 0.77302 0.78763 1.18057 1.15270 1.20165 1.23528 0.97939 0.99314 0.88485 0.90249 0.89687 0.91653 0.80169 0.73172 0.75202 0.89917 0.90869 0.91979 0.93286 0.89637 0.92894 0.92794 0.89650 0.85525 0.77449 0.91195 0.89280 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.81 71.24 0.70 -1.03 16 2 C -0.10 -2.05 6.20 -19.74 -0.12 -2.17 16 3 C -0.24 -3.42 10.83 22.07 0.24 -3.18 16 4 C 0.01 0.12 12.08 67.10 0.81 0.93 16 5 O -0.17 -3.41 10.40 -4.99 -0.05 -3.46 16 6 C -0.12 -2.78 7.13 24.07 0.17 -2.61 16 7 C 0.60 15.47 6.95 86.44 0.60 16.07 16 8 O -0.54 -15.98 12.02 -4.32 -0.05 -16.03 16 9 N -0.70 -15.58 5.09 -422.80 -2.15 -17.73 16 10 C 0.18 3.76 1.01 4.50 0.00 3.76 16 11 C -0.15 -2.64 8.17 71.98 0.59 -2.05 16 12 C -0.11 -3.06 5.48 31.49 0.17 -2.89 16 13 C 0.04 1.22 5.80 86.45 0.50 1.72 16 14 N -0.51 -15.08 5.06 -886.03 -4.48 -19.56 16 15 C 0.04 1.28 5.30 85.56 0.45 1.73 16 16 C 0.45 20.40 7.58 87.65 0.66 21.06 16 17 O -0.61 -34.33 14.42 -3.07 -0.04 -34.37 16 18 N -0.59 -27.91 5.09 -306.98 -1.56 -29.47 16 19 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 20 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 21 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 22 N -0.94 -56.98 13.96 21.66 0.30 -56.68 16 23 Si 0.97 38.62 27.74 68.60 1.90 40.52 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 25 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 26 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 27 C 0.03 0.67 5.69 86.45 0.49 1.16 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.54 6.45 -2.39 -0.02 1.52 16 31 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.25 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.41 8.11 8.02 -92.71 -0.74 7.36 16 34 H 0.08 1.20 8.13 -2.38 -0.02 1.18 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.37 6.30 -2.39 -0.02 1.35 16 37 H 0.05 1.61 7.31 -2.39 -0.02 1.59 16 38 H 0.09 2.15 7.71 -2.38 -0.02 2.13 16 39 H 0.05 2.19 6.91 -2.39 -0.02 2.17 16 40 H 0.05 1.53 7.82 -2.39 -0.02 1.51 16 41 H 0.09 2.03 7.88 -2.38 -0.02 2.01 16 42 H 0.13 2.92 8.13 -2.39 -0.02 2.90 16 43 H 0.39 14.99 5.76 -92.71 -0.53 14.45 16 44 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.09 1.28 7.71 -2.39 -0.02 1.26 16 46 H 0.11 1.68 7.75 -2.39 -0.02 1.66 16 Total: -1.00 -84.40 374.32 0.14 -84.25 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -0.31 Total: 38.98 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 6.60 Total: 13.55 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -7.90 Total: -123.44 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -0.15 Total: -53.87 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.52 kcal Total: -84.40 0.14 -84.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754664297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.092 kcal (2) G-P(sol) polarization free energy of solvation -84.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds