Wall clock time and date at job start Tue Mar 31 2020 18:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35448 * 126.77235 * 2 1 4 4 C 1.41378 * 103.98735 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.80791 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47112 * 124.99953 * 5 4 3 7 7 O 1.21283 * 120.00308 * 0.02562 * 6 5 4 8 8 N 1.34783 * 120.00002 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99976 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46997 * 179.97438 * 9 8 6 11 11 H 1.09002 * 110.36655 * 57.81709 * 10 9 8 12 12 C 1.54554 * 110.32309 * 179.97438 * 10 9 8 13 13 C 1.54765 * 104.07660 * 142.49135 * 12 10 9 14 14 C 1.53345 * 103.67441 * 359.13588 * 13 12 10 15 15 C 1.52315 * 116.12389 * 108.90977 * 14 13 12 16 16 N 1.47287 * 87.68609 * 91.18717 * 15 14 13 17 17 C 1.36932 * 135.92689 * 206.13005 * 16 15 14 18 18 H 1.08002 * 120.00602 * 7.53991 * 17 16 15 19 19 C 1.38817 * 119.99605 * 187.54286 * 17 16 15 20 20 N 1.31629 * 119.99629 * 174.50923 * 19 17 16 21 21 Si 1.86799 * 120.00381 * 354.50965 * 19 17 16 22 22 H 1.48490 * 109.47132 * 174.95477 * 21 19 17 23 23 H 1.48498 * 109.46803 * 294.95709 * 21 19 17 24 24 H 1.48501 * 109.46836 * 54.95491 * 21 19 17 25 25 C 1.47290 * 88.14245 * 26.37920 * 16 15 14 26 26 O 1.43101 * 106.44702 * 337.45430 * 14 13 12 27 27 N 1.30183 * 106.39174 * 0.25828 * 4 3 2 28 28 O 1.20923 * 111.60472 * 359.54023 * 27 4 3 29 29 H 1.09001 * 109.47055 * 90.00253 * 1 2 3 30 30 H 1.08998 * 109.46832 * 210.00110 * 1 2 3 31 31 H 1.09001 * 109.47203 * 329.99607 * 1 2 3 32 32 H 1.08001 * 128.01085 * 0.05553 * 3 2 1 33 33 H 1.09003 * 109.47037 * 5.00111 * 5 4 3 34 34 H 1.08996 * 109.47258 * 245.00218 * 5 4 3 35 35 H 0.96993 * 119.99797 * 359.97438 * 8 6 5 36 36 H 1.08993 * 109.47334 * 59.99526 * 9 8 6 37 37 H 1.09006 * 109.46709 * 299.99122 * 9 8 6 38 38 H 1.08997 * 110.50615 * 23.84079 * 12 10 9 39 39 H 1.08999 * 110.62489 * 261.19660 * 12 10 9 40 40 H 1.09004 * 110.58530 * 240.59490 * 13 12 10 41 41 H 1.08996 * 110.71390 * 117.75142 * 13 12 10 42 42 H 1.08995 * 113.52003 * 336.47968 * 15 14 13 43 43 H 1.09007 * 113.57984 * 205.89345 * 15 14 13 44 44 H 0.97000 * 119.99952 * 354.91136 * 20 19 17 45 45 H 1.09003 * 113.51578 * 88.32543 * 25 16 15 46 46 H 1.08997 * 113.51428 * 218.91971 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 -0.0006 5 6 4.9210 1.3002 -0.0014 6 6 5.7673 0.8518 1.1620 7 8 5.3559 -0.0034 1.9173 8 7 6.9816 1.4010 1.3634 9 6 7.8046 0.9647 2.4941 10 6 9.1241 1.7392 2.4934 11 1 8.9346 2.8114 2.5440 12 6 10.0084 1.2942 3.6802 13 6 11.4453 1.3098 3.1056 14 6 11.2476 1.7381 1.6465 15 6 11.7238 3.1399 1.2886 16 7 13.0237 2.5437 0.9362 17 6 14.3224 2.9749 0.8856 18 1 14.5824 3.9517 1.2659 19 6 15.3049 2.1563 0.3454 20 7 16.5315 2.6103 0.1973 21 14 14.8862 0.4107 -0.1714 22 1 16.0669 -0.2086 -0.8251 23 1 14.5100 -0.3831 1.0258 24 1 13.7488 0.4365 -1.1258 25 6 12.3155 1.2831 0.6560 26 8 9.8935 1.4198 1.3107 27 7 3.4764 -0.7563 -0.0065 28 8 2.3095 -1.0736 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 2.0344 2.1271 0.0008 33 1 4.7163 2.3670 0.0881 34 1 5.4537 1.1094 -0.9330 35 1 7.3108 2.0847 0.7592 36 1 8.0097 -0.1020 2.4040 37 1 7.2718 1.1549 3.4259 38 1 9.7370 0.2890 4.0028 39 1 9.9208 1.9968 4.5089 40 1 11.8892 0.3155 3.1563 41 1 12.0650 2.0324 3.6365 42 1 11.7720 3.8144 2.1434 43 1 11.1996 3.5744 0.4373 44 1 16.7326 3.5381 0.3961 45 1 11.9533 1.2063 -0.3693 46 1 12.8612 0.3966 0.9791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755053627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:27 Heat of formation + Delta-G solvation = 43.943531 kcal Electronic energy + Delta-G solvation = -28286.850899 eV Core-core repulsion = 24182.302699 eV Total energy + Delta-G solvation = -4104.548200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -45.16838 -40.43489 -39.69606 -37.03189 -35.03474 -34.61330 -33.69803 -32.37306 -32.09871 -30.48637 -28.92095 -28.13035 -27.00656 -25.63261 -23.97516 -23.31541 -21.65247 -21.38161 -21.27221 -19.90419 -19.16751 -18.00891 -17.51345 -17.49058 -17.07408 -16.70413 -16.11539 -15.79932 -15.52274 -14.96668 -14.81603 -14.63198 -14.15360 -13.84174 -13.69106 -13.61195 -13.46878 -13.30275 -13.25247 -13.04747 -12.75146 -12.63276 -12.29233 -11.98355 -11.61917 -11.56085 -11.35988 -11.29443 -11.02534 -10.71501 -10.50066 -10.44498 -10.34878 -9.98193 -9.73818 -9.58348 -9.26523 -9.20012 -9.02280 -8.94398 -7.23403 -6.34557 -3.29637 1.22693 1.91192 2.43514 2.82764 2.98620 3.39378 3.43406 3.62091 3.79973 3.82453 4.11671 4.52592 4.56145 4.58980 4.64591 4.65198 4.76917 4.78519 4.83624 4.89041 4.93663 4.96985 5.04742 5.14192 5.15104 5.30460 5.34929 5.38264 5.45513 5.49973 5.56648 5.72221 5.76845 5.89197 6.12281 6.13625 6.18944 6.23448 6.23471 6.29938 6.33115 6.51076 7.00903 7.21205 7.28556 8.01989 8.07132 8.17977 8.91694 9.43551 10.28597 11.15343 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.001993 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.024512 B =14042.457339 C =14400.867202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.038 4.038 3 C -0.230 4.230 4 C 0.027 3.973 5 C -0.063 4.063 6 C 0.514 3.486 7 O -0.530 6.530 8 N -0.723 5.723 9 C 0.129 3.871 10 C 0.063 3.937 11 H 0.075 0.925 12 C -0.145 4.145 13 C -0.114 4.114 14 C 0.060 3.940 15 C 0.110 3.890 16 N -0.619 5.619 17 C -0.304 4.304 18 H 0.084 0.916 19 C -0.022 4.022 20 N -0.931 5.931 21 Si 1.066 2.934 22 H -0.293 1.293 23 H -0.292 1.292 24 H -0.285 1.285 25 C 0.112 3.888 26 O -0.354 6.354 27 N -0.336 5.336 28 O 0.104 5.896 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.171 0.829 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.406 0.594 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.261 0.739 45 H 0.054 0.946 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.759 -0.659 2.301 31.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.251 4.251 4 C -0.132 4.132 5 C -0.103 4.103 6 C 0.299 3.701 7 O -0.406 6.406 8 N -0.375 5.375 9 C 0.006 3.994 10 C 0.004 3.996 11 H 0.093 0.907 12 C -0.184 4.184 13 C -0.152 4.152 14 C 0.019 3.981 15 C -0.017 4.017 16 N -0.349 5.349 17 C -0.430 4.430 18 H 0.102 0.898 19 C -0.221 4.221 20 N -0.573 5.573 21 Si 0.898 3.102 22 H -0.220 1.220 23 H -0.220 1.220 24 H -0.212 1.212 25 C -0.014 4.014 26 O -0.272 6.272 27 N -0.037 5.037 28 O 0.035 5.965 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.188 0.812 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.241 0.759 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -30.340 -3.711 2.051 30.634 hybrid contribution -0.665 2.825 0.389 2.929 sum -31.005 -0.886 2.441 31.113 Atomic orbital electron populations 1.20324 0.84084 1.04648 1.04029 1.24496 0.96433 0.86307 1.02936 1.22338 0.91067 1.00963 1.10739 1.22760 0.95956 0.90186 1.04329 1.19985 0.90502 1.00484 0.99359 1.20278 0.81691 0.81934 0.86176 1.90753 1.71912 1.31041 1.46892 1.45859 1.17330 1.43085 1.31242 1.21484 0.88868 0.99789 0.89305 1.23207 0.91134 0.98611 0.86615 0.90704 1.22947 0.95162 1.02591 0.97665 1.22333 0.95892 1.03095 0.93890 1.23624 0.81391 0.97904 0.95146 1.22677 0.87242 0.93852 0.97883 1.45756 1.01306 1.07856 1.79999 1.20111 0.80142 1.03761 1.38937 0.89787 1.25726 0.93100 1.05480 0.97794 1.70926 1.18918 1.17348 1.50096 0.83774 0.74516 0.75597 0.76274 1.22033 1.22002 1.21212 1.22710 0.89859 0.92134 0.96686 1.88947 1.18138 1.85967 1.34187 1.73911 0.96357 1.16176 1.17212 1.84869 1.11364 1.33201 1.67111 0.89433 0.89813 0.89135 0.81166 0.86518 0.86692 0.75895 0.90559 0.90262 0.90435 0.90292 0.90378 0.89624 0.93518 0.93866 0.92878 0.92844 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.45 36.01 0.38 0.13 16 2 C -0.04 -0.30 7.49 -35.30 -0.26 -0.57 16 3 C -0.23 -1.83 11.05 -39.38 -0.44 -2.27 16 4 C 0.03 0.29 6.10 -82.10 -0.50 -0.21 16 5 C -0.06 -0.53 6.30 -29.04 -0.18 -0.71 16 6 C 0.51 6.09 7.82 -10.98 -0.09 6.01 16 7 O -0.53 -8.62 15.60 5.56 0.09 -8.53 16 8 N -0.72 -7.46 5.52 -60.29 -0.33 -7.79 16 9 C 0.13 1.44 5.28 -4.04 -0.02 1.42 16 10 C 0.06 0.73 3.35 -25.92 -0.09 0.65 16 11 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 12 C -0.15 -1.67 6.65 -24.99 -0.17 -1.83 16 13 C -0.11 -1.75 6.50 -25.62 -0.17 -1.91 16 14 C 0.06 1.06 1.39 -91.01 -0.13 0.93 16 15 C 0.11 2.15 8.18 -7.84 -0.06 2.09 16 16 N -0.62 -15.11 3.68 -184.84 -0.68 -15.79 16 17 C -0.30 -8.66 11.08 -15.06 -0.17 -8.83 16 18 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 19 C -0.02 -0.65 5.50 -17.42 -0.10 -0.74 16 20 N -0.93 -29.21 13.70 55.49 0.76 -28.45 16 21 Si 1.07 26.86 25.17 -169.99 -4.28 22.58 16 22 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 23 H -0.29 -6.93 6.49 56.52 0.37 -6.56 16 24 H -0.29 -6.79 6.18 56.52 0.35 -6.44 16 25 C 0.11 2.42 5.27 -7.69 -0.04 2.38 16 26 O -0.35 -5.49 11.12 -35.23 -0.39 -5.88 16 27 N -0.34 -4.53 11.48 33.43 0.38 -4.14 16 28 O 0.10 1.19 11.20 17.18 0.19 1.38 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.41 3.39 8.47 -40.82 -0.35 3.05 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.22 8.12 -51.93 -0.42 0.79 16 41 H 0.09 1.36 7.92 -51.93 -0.41 0.95 16 42 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.26 8.07 8.73 -40.82 -0.36 7.72 16 45 H 0.05 1.17 7.60 -51.93 -0.39 0.78 16 46 H 0.06 1.31 4.77 -51.93 -0.25 1.07 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -37.39 378.72 -7.54 -44.93 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.96 Total: -0.53 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.03 Total: -3.48 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.13 Total: -56.18 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.11 Total: -13.03 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -4.28 Total: 22.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.39 -7.54 -44.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755053627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.871 kcal (2) G-P(sol) polarization free energy of solvation -37.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds