Wall clock time and date at job start Tue Mar 31 2020 18:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35448 * 126.77235 * 2 1 4 4 C 1.41378 * 103.98735 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.80791 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47112 * 124.99953 * 5 4 3 7 7 O 1.21283 * 120.00308 * 0.02562 * 6 5 4 8 8 N 1.34783 * 120.00002 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99976 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46997 * 179.97438 * 9 8 6 11 11 H 1.09002 * 110.36655 * 57.81709 * 10 9 8 12 12 C 1.54554 * 110.32309 * 179.97438 * 10 9 8 13 13 C 1.54765 * 104.07660 * 142.49135 * 12 10 9 14 14 C 1.53345 * 103.67441 * 359.13588 * 13 12 10 15 15 C 1.52315 * 116.12389 * 108.90977 * 14 13 12 16 16 N 1.47287 * 87.68609 * 91.18717 * 15 14 13 17 17 C 1.36932 * 135.92689 * 206.13005 * 16 15 14 18 18 H 1.08002 * 120.00602 * 7.53991 * 17 16 15 19 19 C 1.38817 * 119.99605 * 187.54286 * 17 16 15 20 20 N 1.31629 * 119.99629 * 174.50923 * 19 17 16 21 21 Si 1.86799 * 120.00381 * 354.50965 * 19 17 16 22 22 H 1.48490 * 109.47132 * 174.95477 * 21 19 17 23 23 H 1.48498 * 109.46803 * 294.95709 * 21 19 17 24 24 H 1.48501 * 109.46836 * 54.95491 * 21 19 17 25 25 C 1.47290 * 88.14245 * 26.37920 * 16 15 14 26 26 O 1.43101 * 106.44702 * 337.45430 * 14 13 12 27 27 N 1.30183 * 106.39174 * 0.25828 * 4 3 2 28 28 O 1.20923 * 111.60472 * 359.54023 * 27 4 3 29 29 H 1.09001 * 109.47055 * 90.00253 * 1 2 3 30 30 H 1.08998 * 109.46832 * 210.00110 * 1 2 3 31 31 H 1.09001 * 109.47203 * 329.99607 * 1 2 3 32 32 H 1.08001 * 128.01085 * 0.05553 * 3 2 1 33 33 H 1.09003 * 109.47037 * 5.00111 * 5 4 3 34 34 H 1.08996 * 109.47258 * 245.00218 * 5 4 3 35 35 H 0.96993 * 119.99797 * 359.97438 * 8 6 5 36 36 H 1.08993 * 109.47334 * 59.99526 * 9 8 6 37 37 H 1.09006 * 109.46709 * 299.99122 * 9 8 6 38 38 H 1.08997 * 110.50615 * 23.84079 * 12 10 9 39 39 H 1.08999 * 110.62489 * 261.19660 * 12 10 9 40 40 H 1.09004 * 110.58530 * 240.59490 * 13 12 10 41 41 H 1.08996 * 110.71390 * 117.75142 * 13 12 10 42 42 H 1.08995 * 113.52003 * 336.47968 * 15 14 13 43 43 H 1.09007 * 113.57984 * 205.89345 * 15 14 13 44 44 H 0.97000 * 119.99952 * 354.91136 * 20 19 17 45 45 H 1.09003 * 113.51578 * 88.32543 * 25 16 15 46 46 H 1.08997 * 113.51428 * 218.91971 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 -0.0006 5 6 4.9210 1.3002 -0.0014 6 6 5.7673 0.8518 1.1620 7 8 5.3559 -0.0034 1.9173 8 7 6.9816 1.4010 1.3634 9 6 7.8046 0.9647 2.4941 10 6 9.1241 1.7392 2.4934 11 1 8.9346 2.8114 2.5440 12 6 10.0084 1.2942 3.6802 13 6 11.4453 1.3098 3.1056 14 6 11.2476 1.7381 1.6465 15 6 11.7238 3.1399 1.2886 16 7 13.0237 2.5437 0.9362 17 6 14.3224 2.9749 0.8856 18 1 14.5824 3.9517 1.2659 19 6 15.3049 2.1563 0.3454 20 7 16.5315 2.6103 0.1973 21 14 14.8862 0.4107 -0.1714 22 1 16.0669 -0.2086 -0.8251 23 1 14.5100 -0.3831 1.0258 24 1 13.7488 0.4365 -1.1258 25 6 12.3155 1.2831 0.6560 26 8 9.8935 1.4198 1.3107 27 7 3.4764 -0.7563 -0.0065 28 8 2.3095 -1.0736 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 2.0344 2.1271 0.0008 33 1 4.7163 2.3670 0.0881 34 1 5.4537 1.1094 -0.9330 35 1 7.3108 2.0847 0.7592 36 1 8.0097 -0.1020 2.4040 37 1 7.2718 1.1549 3.4259 38 1 9.7370 0.2890 4.0028 39 1 9.9208 1.9968 4.5089 40 1 11.8892 0.3155 3.1563 41 1 12.0650 2.0324 3.6365 42 1 11.7720 3.8144 2.1434 43 1 11.1996 3.5744 0.4373 44 1 16.7326 3.5381 0.3961 45 1 11.9533 1.2063 -0.3693 46 1 12.8612 0.3966 0.9791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755053627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:26 Heat of formation + Delta-G solvation = 15.255639 kcal Electronic energy + Delta-G solvation = -28288.094899 eV Core-core repulsion = 24182.302699 eV Total energy + Delta-G solvation = -4105.792200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.87720 -41.73233 -40.68804 -38.44509 -35.86643 -35.53018 -34.49579 -34.23549 -33.18697 -31.48444 -30.14186 -28.65610 -28.45799 -27.26852 -25.13017 -24.03653 -23.34538 -22.33122 -22.18606 -20.79031 -20.63599 -19.51760 -18.76743 -18.18945 -17.94198 -17.71651 -17.40442 -17.05205 -16.47248 -16.36585 -16.16246 -15.50268 -15.26443 -15.18360 -14.74949 -14.69710 -14.44016 -14.27768 -13.94152 -13.91524 -13.82209 -13.44784 -13.20983 -13.16900 -13.10682 -12.76745 -12.70020 -12.51689 -12.25046 -12.06049 -12.00837 -11.68638 -11.36653 -11.27470 -11.25961 -11.06213 -10.84441 -10.49512 -10.19758 -10.15033 -9.28757 -8.64631 -5.52178 0.60489 1.24857 1.36550 1.44554 1.57347 1.63288 2.15864 2.33686 2.49507 2.58964 2.95825 3.17189 3.20815 3.37547 3.53853 3.59503 3.66239 3.88945 3.95428 4.09666 4.15364 4.25438 4.32053 4.37654 4.40580 4.46094 4.52827 4.55622 4.60773 4.67607 4.69972 4.76451 4.79695 4.82706 4.92936 4.94812 4.98582 5.06592 5.09948 5.11966 5.20698 5.30581 5.37478 5.90517 5.94769 6.49014 6.65116 7.19400 7.27075 7.40286 8.20271 8.87081 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.001993 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.024512 B =14042.457339 C =14400.867202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.040 4.040 3 C -0.232 4.232 4 C 0.012 3.988 5 C -0.059 4.059 6 C 0.511 3.489 7 O -0.580 6.580 8 N -0.714 5.714 9 C 0.133 3.867 10 C 0.065 3.935 11 H 0.098 0.902 12 C -0.136 4.136 13 C -0.119 4.119 14 C 0.084 3.916 15 C 0.111 3.889 16 N -0.648 5.648 17 C -0.287 4.287 18 H 0.058 0.942 19 C -0.079 4.079 20 N -0.968 5.968 21 Si 1.101 2.899 22 H -0.302 1.302 23 H -0.271 1.271 24 H -0.266 1.266 25 C 0.099 3.901 26 O -0.362 6.362 27 N -0.389 5.389 28 O 0.079 5.921 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.205 0.795 33 H 0.158 0.842 34 H 0.129 0.871 35 H 0.418 0.582 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.248 0.752 45 H 0.053 0.947 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.172 0.064 2.749 35.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.254 4.254 4 C -0.147 4.147 5 C -0.099 4.099 6 C 0.298 3.702 7 O -0.460 6.460 8 N -0.366 5.366 9 C 0.009 3.991 10 C 0.007 3.993 11 H 0.116 0.884 12 C -0.174 4.174 13 C -0.156 4.156 14 C 0.043 3.957 15 C -0.015 4.015 16 N -0.378 5.378 17 C -0.414 4.414 18 H 0.076 0.924 19 C -0.272 4.272 20 N -0.613 5.613 21 Si 0.928 3.072 22 H -0.230 1.230 23 H -0.198 1.198 24 H -0.192 1.192 25 C -0.026 4.026 26 O -0.280 6.280 27 N -0.094 5.094 28 O 0.013 5.987 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.222 0.778 33 H 0.176 0.824 34 H 0.146 0.854 35 H 0.255 0.745 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -33.824 -2.959 2.502 34.046 hybrid contribution 0.256 2.701 0.280 2.727 sum -33.568 -0.259 2.781 33.684 Atomic orbital electron populations 1.20562 0.80949 1.05921 1.05484 1.25390 0.98147 0.85525 1.01221 1.22784 0.89706 1.02537 1.10328 1.23355 0.97933 0.89927 1.03501 1.20152 0.89151 1.02375 0.98205 1.20856 0.81951 0.81025 0.86366 1.90735 1.73048 1.33303 1.48920 1.45816 1.16823 1.42902 1.31104 1.21405 0.88850 0.98556 0.90252 1.23412 0.90656 0.99956 0.85234 0.88434 1.22944 0.92151 1.04202 0.98067 1.22360 0.98336 1.02467 0.92480 1.23114 0.81822 0.95593 0.95180 1.22854 0.84777 0.95342 0.98521 1.45776 1.01413 1.10259 1.80368 1.19980 0.82524 1.02306 1.36630 0.92447 1.26909 0.92852 1.08833 0.98583 1.71016 1.20422 1.16730 1.53106 0.83346 0.74583 0.72131 0.77148 1.22995 1.19767 1.19155 1.22853 0.91055 0.90843 0.97856 1.88932 1.17066 1.85990 1.36059 1.73898 0.97548 1.18059 1.19895 1.84797 1.11373 1.34710 1.67795 0.87713 0.89391 0.86953 0.77801 0.82408 0.85361 0.74525 0.92562 0.88948 0.89368 0.87645 0.90883 0.90338 0.92239 0.92859 0.94252 0.92966 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.45 71.24 0.74 0.44 16 2 C -0.04 -0.57 7.49 25.04 0.19 -0.38 16 3 C -0.23 -3.19 11.05 22.40 0.25 -2.95 16 4 C 0.01 0.24 6.10 43.58 0.27 0.51 16 5 C -0.06 -0.86 6.30 29.10 0.18 -0.67 16 6 C 0.51 11.25 7.82 87.65 0.69 11.94 16 7 O -0.58 -18.68 15.60 -3.04 -0.05 -18.73 16 8 N -0.71 -12.83 5.52 -463.05 -2.55 -15.39 16 9 C 0.13 2.61 5.28 86.38 0.46 3.07 16 10 C 0.06 1.28 3.35 31.12 0.10 1.38 16 11 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 12 C -0.14 -2.60 6.65 31.73 0.21 -2.39 16 13 C -0.12 -3.32 6.50 31.31 0.20 -3.12 16 14 C 0.08 2.75 1.39 -11.04 -0.02 2.73 16 15 C 0.11 4.07 8.18 83.49 0.68 4.76 16 16 N -0.65 -31.08 3.68 -740.19 -2.72 -33.81 16 17 C -0.29 -16.59 11.08 84.04 0.93 -15.66 16 18 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 19 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 20 N -0.97 -62.53 13.70 21.65 0.30 -62.23 16 21 Si 1.10 54.36 25.17 68.60 1.73 56.08 16 22 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 23 H -0.27 -12.30 6.49 99.48 0.65 -11.65 16 24 H -0.27 -12.13 6.18 99.48 0.61 -11.51 16 25 C 0.10 4.12 5.27 83.58 0.44 4.56 16 26 O -0.36 -10.09 11.12 -148.98 -1.66 -11.75 16 27 N -0.39 -10.65 11.48 -49.54 -0.57 -11.22 16 28 O 0.08 1.84 11.20 71.66 0.80 2.65 16 29 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 0.32 8.14 -2.39 -0.02 0.31 16 31 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.16 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.42 5.55 8.47 -92.71 -0.79 4.76 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.09 1.55 7.87 -2.39 -0.02 1.53 16 39 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 2.12 8.12 -2.38 -0.02 2.10 16 41 H 0.08 2.32 7.92 -2.39 -0.02 2.30 16 42 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 43 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.25 16.03 8.73 -92.71 -0.81 15.22 16 45 H 0.05 2.20 7.60 -2.39 -0.02 2.18 16 46 H 0.05 2.30 4.77 -2.39 -0.01 2.29 16 Total: -1.00 -85.58 378.72 1.10 -84.48 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.02 Total: 9.99 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.80 Total: -0.09 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -5.55 Total: -122.64 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.90 Total: -27.83 kcal Atomic # 14 Polarization: 54.36 SS G_CDS: 1.73 Total: 56.08 kcal Total: -85.58 1.10 -84.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755053627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.740 kcal (2) G-P(sol) polarization free energy of solvation -85.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds