Wall clock time and date at job start Tue Mar 31 2020 19:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40358 * 126.64545 * 2 1 4 4 C 1.35132 * 107.11378 * 179.84068 * 3 2 1 5 5 O 1.33926 * 108.76759 * 0.42529 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72933 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47176 * 35.00447 * 10 9 7 12 12 C 1.52996 * 109.47142 * 275.00128 * 10 9 7 13 13 C 1.53005 * 109.46675 * 155.00143 * 10 9 7 14 14 C 1.53935 * 113.73343 * 276.72263 * 13 10 9 15 15 N 1.47955 * 86.18231 * 221.92697 * 14 13 10 16 16 C 1.46897 * 110.99943 * 137.58863 * 15 14 13 17 17 C 1.50700 * 109.47560 * 90.63974 * 16 15 14 18 18 O 1.21288 * 119.99582 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00025 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99840 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00067 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00021 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99947 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00272 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46892 * 59.99993 * 24 22 20 26 26 H 1.48497 * 109.47243 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46790 * 300.00106 * 24 22 20 28 28 C 1.47961 * 90.76215 * 24.69077 * 15 14 13 29 29 H 1.09002 * 109.47152 * 269.68806 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68907 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68887 * 1 2 3 32 32 H 1.07998 * 126.44501 * 359.97238 * 3 2 1 33 33 H 1.08006 * 125.61408 * 180.12228 * 4 3 2 34 34 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47297 * 60.00130 * 12 10 9 36 36 H 1.08999 * 109.47361 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.47346 * 300.00216 * 12 10 9 38 38 H 1.08998 * 112.93947 * 48.43523 * 13 10 9 39 39 H 1.09002 * 113.75752 * 336.24849 * 14 13 10 40 40 H 1.08995 * 113.75521 * 107.60310 * 14 13 10 41 41 H 1.09004 * 109.46668 * 210.64298 * 16 15 14 42 42 H 1.09002 * 109.47166 * 330.63499 * 16 15 14 43 43 H 0.96999 * 120.00476 * 359.97438 * 19 17 16 44 44 H 0.97004 * 119.99807 * 179.97438 * 23 22 20 45 45 H 1.09003 * 113.75491 * 220.99204 * 28 15 14 46 46 H 1.09005 * 113.75706 * 89.63216 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0036 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0140 8 8 0.6968 -2.7614 -0.0159 9 7 2.7971 -3.4868 -0.0194 10 6 2.3598 -4.8850 -0.0269 11 1 1.4479 -4.9773 -0.6169 12 6 2.0876 -5.3419 1.4076 13 6 3.4554 -5.7586 -0.6413 14 6 3.4285 -5.7954 -2.1800 15 7 3.6931 -7.2454 -2.0514 16 6 2.8716 -8.0160 -2.9944 17 6 3.6237 -8.1923 -4.2883 18 8 4.7347 -7.7218 -4.4129 19 7 3.0619 -8.8727 -5.3070 20 6 3.7460 -9.0326 -6.4843 21 1 4.7352 -8.6137 -6.5952 22 6 3.1670 -9.7346 -7.5344 23 7 1.9635 -10.2448 -7.3992 24 14 4.0993 -9.9531 -9.1383 25 1 5.3684 -10.6789 -8.8782 26 1 3.2690 -10.7327 -10.0912 27 1 4.4013 -8.6208 -9.7207 28 6 3.0961 -7.2544 -0.6976 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 2.0306 2.1594 -0.0004 33 1 4.5046 1.2916 0.0064 34 1 3.7436 -3.2746 -0.0183 35 1 1.3072 -4.7196 1.8453 36 1 1.7618 -6.3821 1.4021 37 1 2.9995 -5.2496 1.9976 38 1 4.4419 -5.5599 -0.2226 39 1 2.4532 -5.5631 -2.6078 40 1 4.2421 -5.2401 -2.6467 41 1 2.6491 -8.9939 -2.5672 42 1 1.9404 -7.4825 -3.1851 43 1 2.1736 -9.2493 -5.2072 44 1 1.5592 -10.7346 -8.1324 45 1 3.6441 -7.8651 0.0199 46 1 2.0236 -7.4490 -0.6920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755371270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:08 Heat of formation + Delta-G solvation = -22.744187 kcal Electronic energy + Delta-G solvation = -28187.002784 eV Core-core repulsion = 24079.562788 eV Total energy + Delta-G solvation = -4107.439996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.03509 -40.49863 -39.36688 -37.74345 -35.65691 -34.33049 -33.84333 -31.95917 -31.19907 -30.51660 -29.40640 -27.84230 -26.24873 -25.55069 -24.33945 -23.36453 -22.02968 -21.09651 -20.54829 -19.59553 -19.16743 -18.29787 -17.80485 -16.78394 -16.62243 -16.39355 -16.06405 -15.26404 -15.17685 -15.00754 -14.63079 -14.44644 -14.17332 -13.84640 -13.71373 -13.43805 -13.36446 -13.31473 -13.04517 -12.85137 -12.70754 -12.54786 -12.32212 -12.12133 -11.86825 -11.59312 -11.36275 -11.04300 -10.97013 -10.69163 -10.65573 -10.41805 -10.29914 -10.17053 -10.05565 -9.46217 -9.45121 -8.91136 -8.68108 -8.13440 -7.92171 -6.37895 -3.78605 0.74107 1.99258 2.36422 2.89422 2.92899 3.22471 3.27597 3.32161 3.91205 3.97017 4.21897 4.28440 4.37721 4.42977 4.53176 4.59443 4.97034 5.02030 5.12922 5.14959 5.18503 5.20722 5.24373 5.38439 5.41584 5.43572 5.44795 5.50902 5.65641 5.69818 5.71530 5.73850 5.77356 5.83304 5.92341 6.00813 6.04872 6.14785 6.29782 6.31595 6.50699 6.61349 7.18971 7.21790 7.58354 7.83250 8.09858 8.66451 9.22252 9.58984 10.11661 10.79992 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.002105 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.969304 B =13301.420726 C =14036.656263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.087 4.087 3 C -0.226 4.226 4 C -0.003 4.003 5 O -0.163 6.163 6 C -0.087 4.087 7 C 0.605 3.395 8 O -0.519 6.519 9 N -0.712 5.712 10 C 0.150 3.850 11 H 0.092 0.908 12 C -0.162 4.162 13 C -0.126 4.126 14 C 0.017 3.983 15 N -0.449 5.449 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.011 3.989 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.156 0.844 33 H 0.210 0.790 34 H 0.406 0.594 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.091 0.909 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 18.992 19.783 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C -0.245 4.245 4 C -0.073 4.073 5 O -0.059 6.059 6 C -0.139 4.139 7 C 0.391 3.609 8 O -0.396 6.396 9 N -0.362 5.362 10 C 0.046 3.954 11 H 0.110 0.890 12 C -0.220 4.220 13 C -0.145 4.145 14 C -0.112 4.112 15 N -0.171 5.171 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.428 4.428 21 H 0.119 0.881 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.119 4.119 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.173 0.827 33 H 0.227 0.773 34 H 0.241 0.759 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.428 18.476 19.417 26.841 hybrid contribution -0.534 0.221 -0.808 0.993 sum -1.961 18.697 18.609 26.452 Atomic orbital electron populations 1.20440 0.88161 1.03742 1.02883 1.20673 0.97737 0.91021 0.99535 1.21764 0.92468 1.00211 1.10101 1.24380 1.00006 0.80587 1.02293 1.84061 1.28312 1.22740 1.70744 1.21881 0.81537 0.94852 1.15602 1.16508 0.85796 0.81817 0.76731 1.90852 1.15689 1.82319 1.50789 1.45974 1.09945 1.06007 1.74301 1.21146 0.98028 0.78906 0.97360 0.88990 1.22148 1.02114 1.01988 0.95754 1.23330 0.99292 0.95187 0.96715 1.23996 1.01491 0.91409 0.94279 1.68375 1.44016 1.04243 1.00458 1.22485 0.95189 0.99819 0.94757 1.19693 0.87974 0.84244 0.84913 1.90514 1.20386 1.52610 1.82424 1.41872 1.18120 1.48301 1.12196 1.19639 1.01523 1.32196 0.89397 0.88056 1.25252 0.96140 0.96828 0.99800 1.69608 1.14502 1.36645 1.33755 0.85924 0.79038 0.78479 0.80806 1.19908 1.20994 1.19955 1.23965 0.99142 0.94865 0.93922 0.90814 0.89372 0.91442 0.82662 0.77298 0.75947 0.92093 0.91066 0.92230 0.87696 0.91358 0.89102 0.89399 0.92430 0.77553 0.91879 0.89026 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.82 36.01 0.35 -0.51 16 2 C -0.09 -0.86 6.20 -104.43 -0.65 -1.51 16 3 C -0.23 -1.70 10.83 -39.89 -0.43 -2.13 16 4 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 5 O -0.16 -1.50 10.40 5.02 0.05 -1.45 16 6 C -0.09 -0.94 7.13 -36.80 -0.26 -1.20 16 7 C 0.60 7.13 7.75 -12.86 -0.10 7.03 16 8 O -0.52 -7.33 14.40 5.20 0.07 -7.26 16 9 N -0.71 -6.99 5.07 -55.12 -0.28 -7.27 16 10 C 0.15 1.48 2.42 -67.93 -0.16 1.32 16 11 H 0.09 1.07 7.37 -51.93 -0.38 0.69 16 12 C -0.16 -1.39 9.29 37.16 0.35 -1.04 16 13 C -0.13 -1.34 3.49 -89.69 -0.31 -1.65 16 14 C 0.02 0.25 7.51 -2.77 -0.02 0.23 16 15 N -0.45 -7.41 5.65 -239.74 -1.35 -8.76 16 16 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 17 C 0.45 10.90 7.83 -10.99 -0.09 10.81 16 18 O -0.58 -16.21 16.01 5.55 0.09 -16.12 16 19 N -0.57 -14.77 5.29 -10.97 -0.06 -14.83 16 20 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 24 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 C 0.01 0.12 6.57 -2.77 -0.02 0.11 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.95 6.44 -51.93 -0.33 0.62 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.21 0.51 8.06 -52.48 -0.42 0.08 16 34 H 0.41 3.34 8.36 -40.82 -0.34 3.00 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.55 7.43 -51.93 -0.39 0.16 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.99 7.29 -51.93 -0.38 0.61 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 42 H 0.06 0.95 7.38 -51.93 -0.38 0.56 16 43 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -34.93 388.77 -7.84 -42.77 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.67 Total: 11.14 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.25 Total: 3.78 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.97 Total: -55.14 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: 0.22 Total: -24.83 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.93 -7.84 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.030 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds