Wall clock time and date at job start Tue Mar 31 2020 19:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40358 * 126.64545 * 2 1 4 4 C 1.35132 * 107.11378 * 179.84068 * 3 2 1 5 5 O 1.33926 * 108.76759 * 0.42529 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72933 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47176 * 35.00447 * 10 9 7 12 12 C 1.52996 * 109.47142 * 275.00128 * 10 9 7 13 13 C 1.53005 * 109.46675 * 155.00143 * 10 9 7 14 14 C 1.53935 * 113.73343 * 276.72263 * 13 10 9 15 15 N 1.47955 * 86.18231 * 221.92697 * 14 13 10 16 16 C 1.46897 * 110.99943 * 137.58863 * 15 14 13 17 17 C 1.50700 * 109.47560 * 90.63974 * 16 15 14 18 18 O 1.21288 * 119.99582 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00025 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99840 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00067 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00021 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99947 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00272 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46892 * 59.99993 * 24 22 20 26 26 H 1.48497 * 109.47243 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46790 * 300.00106 * 24 22 20 28 28 C 1.47961 * 90.76215 * 24.69077 * 15 14 13 29 29 H 1.09002 * 109.47152 * 269.68806 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68907 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68887 * 1 2 3 32 32 H 1.07998 * 126.44501 * 359.97238 * 3 2 1 33 33 H 1.08006 * 125.61408 * 180.12228 * 4 3 2 34 34 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47297 * 60.00130 * 12 10 9 36 36 H 1.08999 * 109.47361 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.47346 * 300.00216 * 12 10 9 38 38 H 1.08998 * 112.93947 * 48.43523 * 13 10 9 39 39 H 1.09002 * 113.75752 * 336.24849 * 14 13 10 40 40 H 1.08995 * 113.75521 * 107.60310 * 14 13 10 41 41 H 1.09004 * 109.46668 * 210.64298 * 16 15 14 42 42 H 1.09002 * 109.47166 * 330.63499 * 16 15 14 43 43 H 0.96999 * 120.00476 * 359.97438 * 19 17 16 44 44 H 0.97004 * 119.99807 * 179.97438 * 23 22 20 45 45 H 1.09003 * 113.75491 * 220.99204 * 28 15 14 46 46 H 1.09005 * 113.75706 * 89.63216 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0036 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0140 8 8 0.6968 -2.7614 -0.0159 9 7 2.7971 -3.4868 -0.0194 10 6 2.3598 -4.8850 -0.0269 11 1 1.4479 -4.9773 -0.6169 12 6 2.0876 -5.3419 1.4076 13 6 3.4554 -5.7586 -0.6413 14 6 3.4285 -5.7954 -2.1800 15 7 3.6931 -7.2454 -2.0514 16 6 2.8716 -8.0160 -2.9944 17 6 3.6237 -8.1923 -4.2883 18 8 4.7347 -7.7218 -4.4129 19 7 3.0619 -8.8727 -5.3070 20 6 3.7460 -9.0326 -6.4843 21 1 4.7352 -8.6137 -6.5952 22 6 3.1670 -9.7346 -7.5344 23 7 1.9635 -10.2448 -7.3992 24 14 4.0993 -9.9531 -9.1383 25 1 5.3684 -10.6789 -8.8782 26 1 3.2690 -10.7327 -10.0912 27 1 4.4013 -8.6208 -9.7207 28 6 3.0961 -7.2544 -0.6976 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 2.0306 2.1594 -0.0004 33 1 4.5046 1.2916 0.0064 34 1 3.7436 -3.2746 -0.0183 35 1 1.3072 -4.7196 1.8453 36 1 1.7618 -6.3821 1.4021 37 1 2.9995 -5.2496 1.9976 38 1 4.4419 -5.5599 -0.2226 39 1 2.4532 -5.5631 -2.6078 40 1 4.2421 -5.2401 -2.6467 41 1 2.6491 -8.9939 -2.5672 42 1 1.9404 -7.4825 -3.1851 43 1 2.1736 -9.2493 -5.2072 44 1 1.5592 -10.7346 -8.1324 45 1 3.6441 -7.8651 0.0199 46 1 2.0236 -7.4490 -0.6920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755371270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:07 Heat of formation + Delta-G solvation = -49.997528 kcal Electronic energy + Delta-G solvation = -28188.184578 eV Core-core repulsion = 24079.562788 eV Total energy + Delta-G solvation = -4108.621790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.67561 -41.55571 -40.43059 -39.55177 -36.59138 -35.91807 -35.01660 -33.33680 -32.82570 -31.32098 -30.50361 -28.56366 -27.57871 -26.91715 -25.68400 -24.34296 -22.83595 -21.93068 -21.39260 -20.99012 -20.44684 -19.90186 -19.05702 -17.81329 -17.62393 -17.38024 -17.09383 -16.59891 -16.53842 -16.30544 -15.91213 -15.66632 -15.54877 -15.09035 -14.84824 -14.55582 -14.22940 -14.05406 -14.01371 -13.89443 -13.69978 -13.53060 -13.52336 -13.37492 -12.99074 -12.84028 -12.70906 -12.66016 -12.45017 -12.14538 -11.86255 -11.83888 -11.67261 -11.50488 -11.19064 -10.68211 -10.39895 -10.29867 -10.02464 -9.65897 -9.54425 -8.47475 -5.96584 0.02368 1.38567 1.39755 1.40543 1.51194 1.68307 2.04849 2.07496 2.19556 2.27822 2.77144 3.18347 3.29434 3.44729 3.60271 3.73915 3.81234 3.94137 4.12077 4.15428 4.22793 4.30404 4.40985 4.45184 4.49374 4.52802 4.53281 4.61992 4.73875 4.75528 4.77385 4.78582 4.83434 4.96618 5.10432 5.13618 5.21754 5.29343 5.38724 5.40002 5.42950 5.49777 5.86176 5.89255 6.08136 6.42729 6.59753 7.01131 7.11831 7.55432 8.11976 8.69829 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.002105 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.969304 B =13301.420726 C =14036.656263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.098 4.098 3 C -0.237 4.237 4 C 0.013 3.987 5 O -0.171 6.171 6 C -0.120 4.120 7 C 0.601 3.399 8 O -0.552 6.552 9 N -0.705 5.705 10 C 0.155 3.845 11 H 0.074 0.926 12 C -0.155 4.155 13 C -0.099 4.099 14 C 0.009 3.991 15 N -0.482 5.482 16 C 0.023 3.977 17 C 0.441 3.559 18 O -0.619 6.619 19 N -0.577 5.577 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.018 3.982 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.181 0.819 33 H 0.254 0.746 34 H 0.414 0.586 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.110 0.890 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 19.819 20.860 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.256 4.256 4 C -0.057 4.057 5 O -0.067 6.067 6 C -0.171 4.171 7 C 0.388 3.612 8 O -0.433 6.433 9 N -0.355 5.355 10 C 0.051 3.949 11 H 0.092 0.908 12 C -0.213 4.213 13 C -0.119 4.119 14 C -0.120 4.120 15 N -0.205 5.205 16 C -0.109 4.109 17 C 0.228 3.772 18 O -0.505 6.505 19 N -0.214 5.214 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.193 1.193 27 H -0.198 1.198 28 C -0.110 4.110 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.198 0.802 33 H 0.270 0.730 34 H 0.250 0.750 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.136 0.864 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.093 0.907 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.128 0.872 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.068 19.292 20.519 28.184 hybrid contribution -0.610 0.061 -1.116 1.274 sum -1.677 19.353 19.403 27.456 Atomic orbital electron populations 1.20421 0.88076 1.03478 1.03087 1.21039 0.98263 0.91934 0.98874 1.22098 0.92382 1.00740 1.10390 1.25320 1.01387 0.79716 0.99238 1.84052 1.27507 1.24168 1.70962 1.21733 0.82479 0.94574 1.18333 1.16708 0.85557 0.82621 0.76276 1.90823 1.16930 1.82998 1.52550 1.45925 1.10191 1.05777 1.73613 1.21053 0.96893 0.78853 0.98101 0.90759 1.22093 1.02371 1.02411 0.94435 1.23137 1.00153 0.94944 0.93626 1.24004 1.00403 0.90462 0.97169 1.68336 1.45028 1.04800 1.02306 1.22364 0.94898 1.01723 0.91922 1.20835 0.87703 0.82283 0.86339 1.90475 1.22540 1.53918 1.83565 1.41963 1.18257 1.48970 1.12256 1.19613 1.01394 1.34052 0.91338 0.90495 1.26060 0.96972 0.95803 1.02548 1.69671 1.15252 1.36422 1.34865 0.84986 0.77971 0.78520 0.76835 1.19628 1.19333 1.19756 1.24089 1.00287 0.95432 0.91203 0.90340 0.91715 0.89554 0.80197 0.73023 0.75002 0.93372 0.89702 0.90878 0.86368 0.91733 0.91285 0.87189 0.90656 0.77059 0.91277 0.87182 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.82 71.24 0.70 -1.00 16 2 C -0.10 -1.91 6.20 -19.74 -0.12 -2.03 16 3 C -0.24 -3.08 10.83 22.07 0.24 -2.84 16 4 C 0.01 0.14 12.08 67.10 0.81 0.95 16 5 O -0.17 -2.96 10.40 -4.97 -0.05 -3.01 16 6 C -0.12 -2.59 7.13 24.07 0.17 -2.41 16 7 C 0.60 14.52 7.75 86.44 0.67 15.19 16 8 O -0.55 -16.33 14.40 -4.32 -0.06 -16.40 16 9 N -0.70 -13.69 5.07 -446.51 -2.27 -15.96 16 10 C 0.16 2.94 2.42 44.99 0.11 3.04 16 11 H 0.07 1.72 7.37 -2.39 -0.02 1.70 16 12 C -0.15 -2.38 9.29 71.98 0.67 -1.71 16 13 C -0.10 -1.97 3.49 -10.15 -0.04 -2.00 16 14 C 0.01 0.25 7.51 86.41 0.65 0.90 16 15 N -0.48 -15.52 5.65 -912.40 -5.15 -20.67 16 16 C 0.02 0.81 5.28 85.56 0.45 1.26 16 17 C 0.44 21.97 7.83 87.66 0.69 22.65 16 18 O -0.62 -35.99 16.01 -3.06 -0.05 -36.04 16 19 N -0.58 -30.71 5.29 -307.00 -1.62 -32.33 16 20 C -0.33 -19.57 9.68 84.04 0.81 -18.76 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -50.78 13.05 21.66 0.28 -50.50 16 24 Si 0.99 43.86 29.55 68.60 2.03 45.88 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 28 C 0.02 0.38 6.57 86.41 0.57 0.95 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.48 6.44 -2.39 -0.02 1.47 16 31 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.25 0.17 8.06 -2.91 -0.02 0.15 16 34 H 0.41 6.57 8.36 -92.71 -0.77 5.80 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.08 7.43 -2.39 -0.02 1.06 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 1.90 7.29 -2.39 -0.02 1.88 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.11 3.41 8.08 -2.39 -0.02 3.39 16 42 H 0.08 2.41 7.38 -2.39 -0.02 2.39 16 43 H 0.40 19.94 7.90 -92.71 -0.73 19.21 16 44 H 0.28 14.33 8.31 -92.70 -0.77 13.56 16 45 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.09 1.57 7.85 -2.38 -0.02 1.55 16 Total: -1.00 -78.64 388.77 -0.54 -79.18 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: -0.48 Total: 35.97 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.84 Total: 13.87 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -8.76 Total: -119.46 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -0.16 Total: -55.44 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -78.64 -0.54 -79.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.179 kcal (2) G-P(sol) polarization free energy of solvation -78.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds