Wall clock time and date at job start Tue Mar 31 2020 19:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40363 * 126.64150 * 2 1 4 4 C 1.35135 * 107.11655 * 179.89355 * 3 2 1 5 5 O 1.33939 * 108.76340 * 0.37300 * 4 3 2 6 6 C 1.34914 * 109.38385 * 359.75934 * 5 4 3 7 7 C 1.46658 * 125.98935 * 180.02562 * 6 5 4 8 8 O 1.21688 * 120.00267 * 179.97438 * 7 6 5 9 9 N 1.34775 * 119.99644 * 359.96124 * 7 6 5 10 10 C 1.46503 * 119.99963 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.46550 * 324.99374 * 10 9 7 12 12 C 1.52998 * 109.47114 * 84.99724 * 10 9 7 13 13 C 1.53004 * 109.47002 * 204.99669 * 10 9 7 14 14 C 1.53934 * 113.73385 * 161.86922 * 13 10 9 15 15 N 1.48179 * 86.10446 * 221.95983 * 14 13 10 16 16 C 1.46896 * 111.07342 * 137.51999 * 15 14 13 17 17 C 1.50702 * 109.47064 * 90.56767 * 16 15 14 18 18 O 1.21291 * 120.00212 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99972 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00242 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99440 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00384 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00124 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00175 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47234 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47008 * 119.99523 * 24 22 20 27 27 H 1.48494 * 109.47377 * 239.99824 * 24 22 20 28 28 C 1.47964 * 90.80118 * 24.59859 * 15 14 13 29 29 H 1.09004 * 109.47050 * 269.68800 * 1 2 3 30 30 H 1.08998 * 109.46789 * 149.69224 * 1 2 3 31 31 H 1.08994 * 109.47366 * 29.69074 * 1 2 3 32 32 H 1.07999 * 126.44726 * 0.03445 * 3 2 1 33 33 H 1.07998 * 125.62373 * 180.11258 * 4 3 2 34 34 H 0.97001 * 120.00450 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.46956 * 180.09545 * 12 10 9 36 36 H 1.08991 * 109.47149 * 300.09648 * 12 10 9 37 37 H 1.09000 * 109.47446 * 60.09842 * 12 10 9 38 38 H 1.08996 * 112.93859 * 293.43809 * 13 10 9 39 39 H 1.09005 * 113.76095 * 336.24317 * 14 13 10 40 40 H 1.09004 * 113.75862 * 107.60192 * 14 13 10 41 41 H 1.09004 * 109.47455 * 210.56454 * 16 15 14 42 42 H 1.09000 * 109.47275 * 330.56564 * 16 15 14 43 43 H 0.96997 * 120.00381 * 359.97438 * 19 17 16 44 44 H 0.97000 * 120.00373 * 180.02562 * 23 22 20 45 45 H 1.09000 * 113.76007 * 221.08428 * 28 15 14 46 46 H 1.09001 * 113.85542 * 89.72893 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6746 0.0024 5 8 3.6005 -0.6646 -0.0044 6 6 2.3220 -1.0955 -0.0059 7 6 1.8843 -2.4952 -0.0123 8 8 0.6969 -2.7614 -0.0126 9 7 2.7972 -3.4867 -0.0180 10 6 2.3600 -4.8849 -0.0249 11 1 1.4486 -4.9834 0.5647 12 6 2.0867 -5.3267 -1.4640 13 6 3.4561 -5.7650 0.5793 14 6 2.9603 -7.1514 1.0282 15 7 3.8057 -6.9533 2.2289 16 6 3.1066 -7.3895 3.4449 17 6 3.4138 -8.8414 3.7074 18 8 4.1429 -9.4527 2.9552 19 7 2.8774 -9.4609 4.7775 20 6 3.1564 -10.7819 5.0160 21 1 3.8057 -11.3261 4.3461 22 6 2.6039 -11.4204 6.1195 23 7 1.8143 -10.7581 6.9348 24 14 2.9835 -13.2204 6.4441 25 1 3.8907 -13.7336 5.3863 26 1 3.6403 -13.3567 7.7690 27 1 1.7210 -14.0021 6.4346 28 6 3.7249 -5.4845 2.0689 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3634 0.8927 -0.5090 32 1 2.0305 2.1595 0.0005 33 1 4.5046 1.2918 0.0048 34 1 3.7437 -3.2745 -0.0183 35 1 1.7598 -6.3666 -1.4690 36 1 1.3071 -4.6987 -1.8950 37 1 2.9986 -5.2298 -2.0533 38 1 4.3587 -5.7981 -0.0307 39 1 1.8924 -7.1873 1.2440 40 1 3.2930 -7.9662 0.3850 41 1 3.4402 -6.7889 4.2912 42 1 2.0322 -7.2639 3.3113 43 1 2.2940 -8.9722 5.3789 44 1 1.4289 -11.2037 7.7054 45 1 4.6674 -4.9699 2.2558 46 1 2.8818 -5.0301 2.5893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755371271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:11 Heat of formation + Delta-G solvation = -23.301690 kcal Electronic energy + Delta-G solvation = -28156.919803 eV Core-core repulsion = 24049.455632 eV Total energy + Delta-G solvation = -4107.464171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.07311 -40.50053 -39.36149 -37.74193 -35.66481 -34.36422 -33.84473 -31.96952 -31.20318 -30.53656 -29.45182 -27.86598 -26.03754 -25.76596 -24.32764 -23.37642 -22.03335 -21.11017 -20.52419 -19.65126 -19.18043 -18.35863 -17.81928 -16.79637 -16.59806 -16.42792 -15.98586 -15.52530 -15.20750 -14.83880 -14.65278 -14.46755 -14.15440 -13.84247 -13.71035 -13.50399 -13.39501 -13.36069 -12.98217 -12.87960 -12.69019 -12.55042 -12.29963 -12.14654 -11.96071 -11.55240 -11.30376 -11.07605 -10.94457 -10.86368 -10.57984 -10.33056 -10.31304 -10.18409 -10.08997 -9.48162 -9.47547 -8.94674 -8.68934 -8.13623 -7.92407 -6.38290 -3.78946 0.70344 1.95399 2.32450 2.87059 2.88606 3.18485 3.28598 3.36045 3.90627 3.96430 4.23667 4.24320 4.37018 4.39192 4.53615 4.56956 4.96059 5.04585 5.09172 5.12038 5.14793 5.21153 5.26549 5.37903 5.41265 5.42276 5.46340 5.50616 5.66114 5.68579 5.70785 5.73033 5.76684 5.80215 5.93795 5.99603 6.03209 6.17228 6.26417 6.31373 6.46842 6.60470 7.17326 7.20455 7.58530 7.80637 8.10045 8.66031 9.22159 9.58794 10.11249 10.79740 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.001920 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.497661 B =14583.137636 C =14839.198951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.087 4.087 3 C -0.226 4.226 4 C -0.003 4.003 5 O -0.164 6.164 6 C -0.087 4.087 7 C 0.604 3.396 8 O -0.518 6.518 9 N -0.712 5.712 10 C 0.150 3.850 11 H 0.092 0.908 12 C -0.162 4.162 13 C -0.127 4.127 14 C 0.024 3.976 15 N -0.448 5.448 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.005 3.995 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.156 0.844 33 H 0.210 0.790 34 H 0.405 0.595 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.391 0.609 44 H 0.270 0.730 45 H 0.087 0.913 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 25.160 -14.775 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.245 4.245 4 C -0.073 4.073 5 O -0.059 6.059 6 C -0.139 4.139 7 C 0.391 3.609 8 O -0.396 6.396 9 N -0.362 5.362 10 C 0.046 3.954 11 H 0.110 0.890 12 C -0.220 4.220 13 C -0.146 4.146 14 C -0.106 4.106 15 N -0.170 5.170 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.125 4.125 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.173 0.827 33 H 0.227 0.773 34 H 0.240 0.760 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.422 23.890 -15.041 28.233 hybrid contribution -0.556 0.226 0.843 1.035 sum -0.133 24.116 -14.197 27.985 Atomic orbital electron populations 1.20440 0.88154 1.03603 1.03054 1.20676 0.97744 0.91023 0.99505 1.21769 0.92470 1.00219 1.10059 1.24378 0.99998 0.80587 1.02353 1.84062 1.28320 1.22728 1.70789 1.21893 0.81519 0.94860 1.15607 1.16510 0.85810 0.81797 0.76810 1.90860 1.15691 1.82281 1.50734 1.45959 1.09906 1.06042 1.74290 1.21145 0.97980 0.78765 0.97530 0.89001 1.22148 1.02095 1.02209 0.95585 1.23355 0.98884 0.95936 0.96433 1.23956 0.96605 0.96229 0.93769 1.68409 1.41137 1.06335 1.01163 1.22481 0.97311 0.97453 0.94985 1.19693 0.85312 0.87785 0.83991 1.90517 1.40054 1.66729 1.48568 1.41891 1.43715 1.11396 1.23545 1.19745 1.27560 0.86023 1.09292 0.87914 1.25257 0.96562 1.00384 0.95898 1.69621 1.32266 1.37326 1.15280 0.85805 0.78196 0.82043 0.78328 1.19236 1.20785 1.20803 1.23975 1.01820 0.92046 0.94620 0.90680 0.89430 0.91487 0.82665 0.77308 0.76011 0.90937 0.92106 0.92246 0.87624 0.91156 0.88685 0.89492 0.92419 0.77570 0.91986 0.89414 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 9.81 36.00 0.35 -0.46 16 2 C -0.09 -0.81 6.20 -104.44 -0.65 -1.46 16 3 C -0.23 -1.56 10.83 -39.89 -0.43 -1.99 16 4 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 5 O -0.16 -1.39 10.40 4.97 0.05 -1.33 16 6 C -0.09 -0.88 7.13 -36.80 -0.26 -1.14 16 7 C 0.60 6.77 7.75 -12.86 -0.10 6.67 16 8 O -0.52 -7.12 14.40 5.20 0.07 -7.05 16 9 N -0.71 -6.58 4.94 -55.12 -0.27 -6.85 16 10 C 0.15 1.48 2.29 -67.93 -0.16 1.32 16 11 H 0.09 1.06 7.48 -51.93 -0.39 0.67 16 12 C -0.16 -1.48 9.44 37.16 0.35 -1.13 16 13 C -0.13 -1.34 3.35 -89.68 -0.30 -1.64 16 14 C 0.02 0.33 7.42 -2.64 -0.02 0.31 16 15 N -0.45 -7.40 5.65 -239.52 -1.35 -8.76 16 16 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 17 C 0.45 10.86 7.83 -10.99 -0.09 10.78 16 18 O -0.58 -16.09 16.01 5.55 0.09 -16.00 16 19 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 20 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 21 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 23 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 24 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.00 0.06 7.38 -2.76 -0.02 0.03 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.89 6.45 -51.93 -0.33 0.55 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.21 0.37 8.06 -52.49 -0.42 -0.05 16 34 H 0.41 3.06 8.36 -40.82 -0.34 2.71 16 35 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.95 7.38 -51.93 -0.38 0.56 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 42 H 0.06 0.95 7.39 -51.93 -0.38 0.57 16 43 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.80 7.88 -51.93 -0.41 0.39 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -34.69 390.15 -7.83 -42.53 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.72 Total: 10.63 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.23 Total: 3.66 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.96 Total: -54.67 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.22 Total: -24.38 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.69 -7.83 -42.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.225 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds