Wall clock time and date at job start Tue Mar 31 2020 19:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40363 * 126.64150 * 2 1 4 4 C 1.35135 * 107.11655 * 179.89355 * 3 2 1 5 5 O 1.33939 * 108.76340 * 0.37300 * 4 3 2 6 6 C 1.34914 * 109.38385 * 359.75934 * 5 4 3 7 7 C 1.46658 * 125.98935 * 180.02562 * 6 5 4 8 8 O 1.21688 * 120.00267 * 179.97438 * 7 6 5 9 9 N 1.34775 * 119.99644 * 359.96124 * 7 6 5 10 10 C 1.46503 * 119.99963 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.46550 * 324.99374 * 10 9 7 12 12 C 1.52998 * 109.47114 * 84.99724 * 10 9 7 13 13 C 1.53004 * 109.47002 * 204.99669 * 10 9 7 14 14 C 1.53934 * 113.73385 * 161.86922 * 13 10 9 15 15 N 1.48179 * 86.10446 * 221.95983 * 14 13 10 16 16 C 1.46896 * 111.07342 * 137.51999 * 15 14 13 17 17 C 1.50702 * 109.47064 * 90.56767 * 16 15 14 18 18 O 1.21291 * 120.00212 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99972 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00242 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99440 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00384 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00124 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00175 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47234 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47008 * 119.99523 * 24 22 20 27 27 H 1.48494 * 109.47377 * 239.99824 * 24 22 20 28 28 C 1.47964 * 90.80118 * 24.59859 * 15 14 13 29 29 H 1.09004 * 109.47050 * 269.68800 * 1 2 3 30 30 H 1.08998 * 109.46789 * 149.69224 * 1 2 3 31 31 H 1.08994 * 109.47366 * 29.69074 * 1 2 3 32 32 H 1.07999 * 126.44726 * 0.03445 * 3 2 1 33 33 H 1.07998 * 125.62373 * 180.11258 * 4 3 2 34 34 H 0.97001 * 120.00450 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.46956 * 180.09545 * 12 10 9 36 36 H 1.08991 * 109.47149 * 300.09648 * 12 10 9 37 37 H 1.09000 * 109.47446 * 60.09842 * 12 10 9 38 38 H 1.08996 * 112.93859 * 293.43809 * 13 10 9 39 39 H 1.09005 * 113.76095 * 336.24317 * 14 13 10 40 40 H 1.09004 * 113.75862 * 107.60192 * 14 13 10 41 41 H 1.09004 * 109.47455 * 210.56454 * 16 15 14 42 42 H 1.09000 * 109.47275 * 330.56564 * 16 15 14 43 43 H 0.96997 * 120.00381 * 359.97438 * 19 17 16 44 44 H 0.97000 * 120.00373 * 180.02562 * 23 22 20 45 45 H 1.09000 * 113.76007 * 221.08428 * 28 15 14 46 46 H 1.09001 * 113.85542 * 89.72893 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6746 0.0024 5 8 3.6005 -0.6646 -0.0044 6 6 2.3220 -1.0955 -0.0059 7 6 1.8843 -2.4952 -0.0123 8 8 0.6969 -2.7614 -0.0126 9 7 2.7972 -3.4867 -0.0180 10 6 2.3600 -4.8849 -0.0249 11 1 1.4486 -4.9834 0.5647 12 6 2.0867 -5.3267 -1.4640 13 6 3.4561 -5.7650 0.5793 14 6 2.9603 -7.1514 1.0282 15 7 3.8057 -6.9533 2.2289 16 6 3.1066 -7.3895 3.4449 17 6 3.4138 -8.8414 3.7074 18 8 4.1429 -9.4527 2.9552 19 7 2.8774 -9.4609 4.7775 20 6 3.1564 -10.7819 5.0160 21 1 3.8057 -11.3261 4.3461 22 6 2.6039 -11.4204 6.1195 23 7 1.8143 -10.7581 6.9348 24 14 2.9835 -13.2204 6.4441 25 1 3.8907 -13.7336 5.3863 26 1 3.6403 -13.3567 7.7690 27 1 1.7210 -14.0021 6.4346 28 6 3.7249 -5.4845 2.0689 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3634 0.8927 -0.5090 32 1 2.0305 2.1595 0.0005 33 1 4.5046 1.2918 0.0048 34 1 3.7437 -3.2745 -0.0183 35 1 1.7598 -6.3666 -1.4690 36 1 1.3071 -4.6987 -1.8950 37 1 2.9986 -5.2298 -2.0533 38 1 4.3587 -5.7981 -0.0307 39 1 1.8924 -7.1873 1.2440 40 1 3.2930 -7.9662 0.3850 41 1 3.4402 -6.7889 4.2912 42 1 2.0322 -7.2639 3.3113 43 1 2.2940 -8.9722 5.3789 44 1 1.4289 -11.2037 7.7054 45 1 4.6674 -4.9699 2.2558 46 1 2.8818 -5.0301 2.5893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755371271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:10 Heat of formation + Delta-G solvation = -50.057026 kcal Electronic energy + Delta-G solvation = -28158.080001 eV Core-core repulsion = 24049.455632 eV Total energy + Delta-G solvation = -4108.624370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.65145 -41.54770 -40.41313 -39.53606 -36.58378 -35.91235 -34.99751 -33.33224 -32.81297 -31.30731 -30.55356 -28.54395 -27.44671 -27.04127 -25.73020 -24.29193 -22.79540 -21.92282 -21.34164 -20.98887 -20.49968 -19.90095 -19.06895 -17.86405 -17.50713 -17.30983 -17.07653 -16.75086 -16.55064 -16.27672 -15.82967 -15.66598 -15.52223 -15.11728 -14.83103 -14.58193 -14.15902 -14.07826 -14.00171 -13.87699 -13.70978 -13.52895 -13.50888 -13.43685 -13.00872 -12.90949 -12.76302 -12.47357 -12.41800 -12.13464 -11.95016 -11.87805 -11.63504 -11.50971 -11.18343 -10.66085 -10.39549 -10.29568 -10.01941 -9.65751 -9.53777 -8.47447 -5.96399 0.04462 1.35736 1.40490 1.42696 1.55153 1.68581 2.04630 2.09586 2.19088 2.27825 2.75418 3.18456 3.32983 3.41192 3.61131 3.76959 3.83474 3.96249 4.09270 4.15173 4.19878 4.30487 4.38599 4.45322 4.48542 4.52053 4.55505 4.63894 4.72279 4.75479 4.76943 4.79144 4.82387 4.94953 5.12409 5.15532 5.21701 5.29313 5.38167 5.39395 5.42009 5.49407 5.88110 5.88841 6.07518 6.45668 6.59730 7.03613 7.12268 7.55598 8.11871 8.70342 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.001920 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.497661 B =14583.137636 C =14839.198951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.098 4.098 3 C -0.238 4.238 4 C 0.014 3.986 5 O -0.169 6.169 6 C -0.118 4.118 7 C 0.602 3.398 8 O -0.553 6.553 9 N -0.701 5.701 10 C 0.158 3.842 11 H 0.075 0.925 12 C -0.158 4.158 13 C -0.099 4.099 14 C 0.016 3.984 15 N -0.481 5.481 16 C 0.023 3.977 17 C 0.443 3.557 18 O -0.617 6.617 19 N -0.577 5.577 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.270 1.270 28 C 0.011 3.989 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.179 0.821 33 H 0.254 0.746 34 H 0.415 0.585 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.103 0.897 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.844 27.117 -14.902 30.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.257 4.257 4 C -0.055 4.055 5 O -0.065 6.065 6 C -0.169 4.169 7 C 0.389 3.611 8 O -0.434 6.434 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.216 4.216 13 C -0.119 4.119 14 C -0.113 4.113 15 N -0.204 5.204 16 C -0.109 4.109 17 C 0.230 3.770 18 O -0.503 6.503 19 N -0.215 5.215 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.195 1.195 28 C -0.117 4.117 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.197 0.803 33 H 0.270 0.730 34 H 0.252 0.748 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.121 0.879 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.280 25.875 -15.160 30.016 hybrid contribution -0.784 -0.274 0.855 1.192 sum 0.496 25.601 -14.305 29.331 Atomic orbital electron populations 1.20417 0.88232 1.03555 1.02926 1.21020 0.98172 0.92005 0.98920 1.22093 0.92447 1.00699 1.10448 1.25312 1.01312 0.79728 0.99154 1.84054 1.27389 1.24097 1.70947 1.21678 0.82490 0.94423 1.18308 1.16700 0.85501 0.82599 0.76256 1.90836 1.17069 1.82980 1.52512 1.45821 1.10256 1.05401 1.73649 1.20964 0.96947 0.79054 0.97683 0.90666 1.22105 1.02399 1.02015 0.95089 1.23139 0.99184 0.93596 0.95946 1.23994 0.96542 0.97763 0.93020 1.68377 1.41818 1.09315 1.00842 1.22350 0.98688 0.93042 0.96804 1.20778 0.83667 0.90036 0.82506 1.90478 1.41640 1.68473 1.49675 1.41975 1.44221 1.10950 1.24343 1.19696 1.28850 0.87479 1.10128 0.90392 1.26067 0.95885 1.04456 0.95079 1.69681 1.32261 1.38900 1.15459 0.84853 0.78286 0.76863 0.78219 1.19787 1.19534 1.19550 1.24043 1.02921 0.89387 0.95345 0.90804 0.91540 0.89445 0.80323 0.72995 0.74801 0.90761 0.93179 0.90878 0.86193 0.90870 0.90213 0.87733 0.90575 0.77119 0.91316 0.87901 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.81 71.24 0.70 -0.90 16 2 C -0.10 -1.74 6.20 -19.74 -0.12 -1.87 16 3 C -0.24 -2.68 10.83 22.07 0.24 -2.44 16 4 C 0.01 0.12 12.08 67.10 0.81 0.93 16 5 O -0.17 -2.51 10.40 -5.12 -0.05 -2.57 16 6 C -0.12 -2.29 7.13 24.07 0.17 -2.12 16 7 C 0.60 13.43 7.75 86.44 0.67 14.10 16 8 O -0.55 -15.71 14.40 -4.31 -0.06 -15.77 16 9 N -0.70 -12.26 4.94 -446.52 -2.21 -14.47 16 10 C 0.16 2.98 2.29 44.99 0.10 3.08 16 11 H 0.08 1.73 7.48 -2.39 -0.02 1.71 16 12 C -0.16 -2.77 9.44 71.98 0.68 -2.09 16 13 C -0.10 -1.96 3.35 -10.15 -0.03 -1.99 16 14 C 0.02 0.45 7.42 86.37 0.64 1.09 16 15 N -0.48 -15.53 5.65 -911.72 -5.15 -20.67 16 16 C 0.02 0.82 5.28 85.56 0.45 1.28 16 17 C 0.44 21.94 7.83 87.66 0.69 22.62 16 18 O -0.62 -35.54 16.01 -3.06 -0.05 -35.59 16 19 N -0.58 -30.63 5.29 -306.98 -1.62 -32.25 16 20 C -0.33 -19.35 9.68 84.04 0.81 -18.54 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.92 -50.78 13.05 21.66 0.28 -50.49 16 24 Si 0.99 43.79 29.55 68.60 2.03 45.82 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 C 0.01 0.25 7.38 86.41 0.64 0.89 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.41 6.45 -2.39 -0.02 1.40 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 33 H 0.25 -0.34 8.06 -2.91 -0.02 -0.36 16 34 H 0.42 5.53 8.36 -92.71 -0.77 4.75 16 35 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 1.96 7.38 -2.38 -0.02 1.94 16 40 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.10 3.36 8.08 -2.38 -0.02 3.35 16 42 H 0.08 2.45 7.39 -2.39 -0.02 2.43 16 43 H 0.40 19.93 7.90 -92.71 -0.73 19.19 16 44 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 45 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 1.60 7.88 -2.39 -0.02 1.58 16 Total: -1.00 -77.38 390.15 -0.40 -77.78 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.49 Total: 34.54 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.91 Total: 13.66 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -8.69 Total: -117.88 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.16 Total: -53.93 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -77.38 -0.40 -77.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755371271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.725 kcal (2) G-P(sol) polarization free energy of solvation -77.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds