Wall clock time and date at job start Tue Mar 31 2020 20:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 109.46642 * 2 1 4 4 C 1.38163 * 120.02719 * 264.97496 * 3 2 1 5 5 C 1.38243 * 120.05442 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.11362 * 0.02562 * 5 4 3 7 7 C 1.38125 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38708 * 120.02782 * 85.00283 * 3 2 1 9 9 O 1.35898 * 120.05505 * 359.97438 * 8 3 2 10 10 C 1.42904 * 116.99940 * 179.97438 * 9 8 3 11 11 C 1.50706 * 109.47159 * 179.97438 * 10 9 8 12 12 O 1.21276 * 119.99777 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99995 * 179.97438 * 11 10 9 14 14 N 1.40102 * 119.99905 * 180.02562 * 13 11 10 15 15 C 1.34780 * 119.99641 * 180.02562 * 14 13 11 16 16 O 1.21583 * 119.99586 * 180.02562 * 15 14 13 17 17 N 1.34775 * 120.00234 * 0.02562 * 15 14 13 18 18 C 1.46503 * 119.99943 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46704 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.46687 * 179.97438 * 19 18 17 21 21 H 1.08006 * 120.00019 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00046 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99917 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46868 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47214 * 119.99638 * 24 22 20 27 27 H 1.48494 * 109.47056 * 240.00182 * 24 22 20 28 28 H 1.08994 * 109.47183 * 60.00173 * 1 2 3 29 29 H 1.08999 * 109.46673 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46871 * 300.00084 * 1 2 3 31 31 H 1.08995 * 109.47138 * 240.00188 * 2 1 3 32 32 H 1.08994 * 109.47183 * 119.99827 * 2 1 3 33 33 H 1.08001 * 119.97035 * 0.03182 * 4 3 2 34 34 H 1.08004 * 119.94085 * 180.02562 * 5 4 3 35 35 H 1.07993 * 119.96940 * 180.27537 * 6 5 4 36 36 H 1.08000 * 120.02369 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.47040 * 299.99833 * 10 9 8 38 38 H 1.08995 * 109.47340 * 59.99861 * 10 9 8 39 39 H 0.97006 * 119.99880 * 0.02562 * 13 11 10 40 40 H 0.96993 * 119.99883 * 0.02562 * 14 13 11 41 41 H 0.96997 * 120.00142 * 359.97438 * 17 15 14 42 42 H 1.08994 * 109.46755 * 299.99464 * 18 17 15 43 43 H 1.08996 * 109.47030 * 59.99474 * 18 17 15 44 44 H 1.08994 * 109.47437 * 299.99487 * 19 18 17 45 45 H 1.08996 * 109.47447 * 60.00170 * 19 18 17 46 46 H 0.96997 * 120.00344 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3615 2.0379 -1.1916 5 6 2.8228 3.3411 -1.1922 6 6 2.9564 4.0303 -0.0008 7 6 2.6286 3.4179 1.1931 8 6 2.1650 2.1102 1.1963 9 8 1.8419 1.5055 2.3697 10 6 2.0041 2.2756 3.5626 11 6 1.5992 1.4468 4.7544 12 8 1.2105 0.3088 4.5978 13 7 1.6700 1.9701 5.9944 14 7 1.2941 1.1995 7.1024 15 6 1.3645 1.7230 8.3424 16 8 1.0387 1.0541 9.3040 17 7 1.7959 2.9879 8.5164 18 6 1.8718 3.5571 9.8642 19 6 2.3889 4.9947 9.7822 20 6 2.4664 5.5804 11.1686 21 1 2.1763 4.9865 12.0228 22 6 2.9077 6.8745 11.3467 23 7 3.2614 7.5975 10.3067 24 14 3.0044 7.6003 13.0652 25 1 2.5551 6.5890 14.0555 26 1 4.4065 7.9913 13.3592 27 1 2.1291 8.7970 13.1471 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.2583 1.5016 -2.1233 34 1 3.0792 3.8217 -2.1248 35 1 3.3127 5.0498 -0.0044 36 1 2.7328 3.9568 2.1233 37 1 3.0478 2.5729 3.6640 38 1 1.3765 3.1651 3.5090 39 1 1.9812 2.8803 6.1197 40 1 0.9833 0.2893 6.9771 41 1 2.0561 3.5214 7.7493 42 1 0.8803 3.5525 10.3169 43 1 2.5518 2.9608 10.4726 44 1 3.3805 4.9990 9.3297 45 1 1.7092 5.5912 9.1737 46 1 3.5715 8.5080 10.4318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273229939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:08 Heat of formation + Delta-G solvation = -50.482962 kcal Electronic energy + Delta-G solvation = -27458.301639 eV Core-core repulsion = 23349.658799 eV Total energy + Delta-G solvation = -4108.642840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99608 -40.34332 -39.23939 -37.68735 -35.78014 -35.08402 -34.45288 -32.90500 -31.80890 -30.55281 -29.81609 -29.44061 -28.02646 -24.90703 -24.22104 -23.00685 -21.86278 -21.52609 -21.14166 -20.73613 -19.10895 -18.61508 -17.70877 -16.88549 -16.71079 -16.45395 -16.10757 -15.92387 -15.62326 -15.06953 -14.82730 -14.71520 -14.57516 -14.51346 -14.09594 -13.85356 -13.70946 -13.48992 -13.28427 -13.08326 -12.44988 -12.37228 -12.14447 -11.86713 -11.64011 -11.46368 -11.30322 -11.11369 -11.10288 -11.03890 -10.71908 -10.57085 -10.47417 -10.20772 -9.70628 -9.36115 -9.21615 -8.87973 -8.53644 -8.50924 -8.34518 -6.18041 -4.20662 0.95264 1.06533 1.39879 2.04120 2.76956 3.23452 3.25216 3.25296 3.32025 3.37715 3.38459 3.88226 4.32456 4.35210 4.45925 4.47921 4.53292 4.68186 4.86362 4.88811 4.90887 5.10948 5.16301 5.19826 5.23402 5.34563 5.61125 5.70082 5.79644 5.97914 5.99156 6.04538 6.11002 6.15714 6.20933 6.24328 6.39299 6.60055 6.64844 6.70454 6.94664 7.11076 7.40240 7.49380 7.55979 7.80496 8.11482 8.23381 8.59133 8.85326 9.44824 10.93618 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.001965 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.780195 B =14246.068196 C =16082.588218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.107 4.107 4 C -0.082 4.082 5 C -0.154 4.154 6 C -0.084 4.084 7 C -0.207 4.207 8 C 0.129 3.871 9 O -0.284 6.284 10 C 0.050 3.950 11 C 0.517 3.483 12 O -0.512 6.512 13 N -0.522 5.522 14 N -0.535 5.535 15 C 0.708 3.292 16 O -0.573 6.573 17 N -0.734 5.734 18 C 0.136 3.864 19 C 0.012 3.988 20 C -0.521 4.521 21 H 0.061 0.939 22 C 0.059 3.941 23 N -0.894 5.894 24 Si 0.897 3.103 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.424 0.576 40 H 0.439 0.561 41 H 0.387 0.613 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.023 0.977 45 H 0.023 0.977 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 -8.347 -25.681 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.108 4.108 4 C -0.100 4.100 5 C -0.172 4.172 6 C -0.102 4.102 7 C -0.225 4.225 8 C 0.084 3.916 9 O -0.196 6.196 10 C -0.031 4.031 11 C 0.302 3.698 12 O -0.385 6.385 13 N -0.275 5.275 14 N -0.294 5.294 15 C 0.407 3.593 16 O -0.446 6.446 17 N -0.390 5.390 18 C 0.014 3.986 19 C -0.025 4.025 20 C -0.560 4.560 21 H 0.079 0.921 22 C -0.143 4.143 23 N -0.533 5.533 24 Si 0.725 3.275 25 H -0.195 1.195 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.266 0.734 40 H 0.285 0.715 41 H 0.221 0.779 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.041 0.959 45 H 0.041 0.959 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.447 -9.537 -24.964 26.763 hybrid contribution 0.413 1.297 0.554 1.470 sum -1.034 -8.240 -24.410 25.784 Atomic orbital electron populations 1.21697 0.94678 1.01754 1.01964 1.20397 0.96326 0.91860 1.02965 1.19291 1.03869 0.97376 0.90243 1.20908 0.97541 0.94845 0.96727 1.21079 1.02810 0.95084 0.98251 1.20961 0.97695 0.99734 0.91836 1.21293 1.06682 0.94640 0.99925 1.18825 0.96166 0.91458 0.85179 1.86125 1.82026 1.39873 1.11615 1.22258 1.03649 0.94105 0.83039 1.20080 0.79325 0.88127 0.82314 1.90791 1.45093 1.17869 1.84721 1.44571 1.68263 1.15043 0.99656 1.44710 1.73065 1.15421 0.96245 1.15874 0.79225 0.82954 0.81212 1.91015 1.56821 1.60895 1.35907 1.45612 1.69529 1.11955 1.11891 1.21738 1.01162 0.96634 0.79110 1.19342 0.96626 0.88078 0.98458 1.21066 1.44404 0.98148 0.92390 0.92060 1.24993 0.95025 0.97045 0.97224 1.69946 1.44250 1.09601 1.29505 0.86442 0.77730 0.79110 0.84212 1.19530 1.20921 1.20916 0.92992 0.92444 0.92278 0.91287 0.90316 0.85395 0.85867 0.85604 0.85150 0.88069 0.88079 0.73429 0.71506 0.77878 0.92235 0.92238 0.95894 0.95896 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.90 37.16 0.37 -0.80 16 2 C -0.08 -0.65 5.79 -27.88 -0.16 -0.81 16 3 C -0.11 -0.95 5.15 -104.47 -0.54 -1.49 16 4 C -0.08 -0.60 9.68 -39.61 -0.38 -0.99 16 5 C -0.15 -1.06 10.04 -39.56 -0.40 -1.45 16 6 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 7 C -0.21 -1.58 9.04 -39.43 -0.36 -1.94 16 8 C 0.13 1.20 6.66 -39.22 -0.26 0.94 16 9 O -0.28 -2.88 8.81 -39.33 -0.35 -3.23 16 10 C 0.05 0.36 5.22 36.01 0.19 0.55 16 11 C 0.52 5.37 8.02 -10.98 -0.09 5.28 16 12 O -0.51 -7.42 16.34 -14.35 -0.23 -7.66 16 13 N -0.52 -5.09 6.26 31.22 0.20 -4.90 16 14 N -0.54 -7.00 6.26 27.63 0.17 -6.82 16 15 C 0.71 11.61 8.68 -86.92 -0.75 10.86 16 16 O -0.57 -11.71 17.18 5.29 0.09 -11.62 16 17 N -0.73 -11.61 5.52 -65.23 -0.36 -11.97 16 18 C 0.14 2.69 5.61 -4.04 -0.02 2.67 16 19 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 20 C -0.52 -13.81 9.11 -34.44 -0.31 -14.12 16 21 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 23 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 24 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 32 H 0.08 0.77 7.69 -51.93 -0.40 0.37 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.12 0.60 8.06 -52.48 -0.42 0.17 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.71 6.30 -52.49 -0.33 0.38 16 37 H 0.10 0.48 7.66 -51.93 -0.40 0.08 16 38 H 0.10 0.48 7.66 -51.93 -0.40 0.08 16 39 H 0.42 3.00 6.70 -182.59 -1.22 1.78 16 40 H 0.44 5.82 8.10 -182.60 -1.48 4.34 16 41 H 0.39 4.91 6.39 -40.82 -0.26 4.64 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -34.46 393.76 -10.87 -45.33 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -8.68 Total: 4.18 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -3.36 Total: -0.67 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.74 Total: -47.95 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.49 Total: -22.51 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.46 -10.87 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273229939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.157 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds