Wall clock time and date at job start Tue Mar 31 2020 20:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 109.46642 * 2 1 4 4 C 1.38163 * 120.02719 * 264.97496 * 3 2 1 5 5 C 1.38243 * 120.05442 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.11362 * 0.02562 * 5 4 3 7 7 C 1.38125 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38708 * 120.02782 * 85.00283 * 3 2 1 9 9 O 1.35898 * 120.05505 * 359.97438 * 8 3 2 10 10 C 1.42904 * 116.99940 * 179.97438 * 9 8 3 11 11 C 1.50706 * 109.47159 * 179.97438 * 10 9 8 12 12 O 1.21276 * 119.99777 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99995 * 179.97438 * 11 10 9 14 14 N 1.40102 * 119.99905 * 180.02562 * 13 11 10 15 15 C 1.34780 * 119.99641 * 180.02562 * 14 13 11 16 16 O 1.21583 * 119.99586 * 180.02562 * 15 14 13 17 17 N 1.34775 * 120.00234 * 0.02562 * 15 14 13 18 18 C 1.46503 * 119.99943 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46704 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.46687 * 179.97438 * 19 18 17 21 21 H 1.08006 * 120.00019 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00046 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99917 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46868 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47214 * 119.99638 * 24 22 20 27 27 H 1.48494 * 109.47056 * 240.00182 * 24 22 20 28 28 H 1.08994 * 109.47183 * 60.00173 * 1 2 3 29 29 H 1.08999 * 109.46673 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46871 * 300.00084 * 1 2 3 31 31 H 1.08995 * 109.47138 * 240.00188 * 2 1 3 32 32 H 1.08994 * 109.47183 * 119.99827 * 2 1 3 33 33 H 1.08001 * 119.97035 * 0.03182 * 4 3 2 34 34 H 1.08004 * 119.94085 * 180.02562 * 5 4 3 35 35 H 1.07993 * 119.96940 * 180.27537 * 6 5 4 36 36 H 1.08000 * 120.02369 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.47040 * 299.99833 * 10 9 8 38 38 H 1.08995 * 109.47340 * 59.99861 * 10 9 8 39 39 H 0.97006 * 119.99880 * 0.02562 * 13 11 10 40 40 H 0.96993 * 119.99883 * 0.02562 * 14 13 11 41 41 H 0.96997 * 120.00142 * 359.97438 * 17 15 14 42 42 H 1.08994 * 109.46755 * 299.99464 * 18 17 15 43 43 H 1.08996 * 109.47030 * 59.99474 * 18 17 15 44 44 H 1.08994 * 109.47437 * 299.99487 * 19 18 17 45 45 H 1.08996 * 109.47447 * 60.00170 * 19 18 17 46 46 H 0.96997 * 120.00344 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3615 2.0379 -1.1916 5 6 2.8228 3.3411 -1.1922 6 6 2.9564 4.0303 -0.0008 7 6 2.6286 3.4179 1.1931 8 6 2.1650 2.1102 1.1963 9 8 1.8419 1.5055 2.3697 10 6 2.0041 2.2756 3.5626 11 6 1.5992 1.4468 4.7544 12 8 1.2105 0.3088 4.5978 13 7 1.6700 1.9701 5.9944 14 7 1.2941 1.1995 7.1024 15 6 1.3645 1.7230 8.3424 16 8 1.0387 1.0541 9.3040 17 7 1.7959 2.9879 8.5164 18 6 1.8718 3.5571 9.8642 19 6 2.3889 4.9947 9.7822 20 6 2.4664 5.5804 11.1686 21 1 2.1763 4.9865 12.0228 22 6 2.9077 6.8745 11.3467 23 7 3.2614 7.5975 10.3067 24 14 3.0044 7.6003 13.0652 25 1 2.5551 6.5890 14.0555 26 1 4.4065 7.9913 13.3592 27 1 2.1291 8.7970 13.1471 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.2583 1.5016 -2.1233 34 1 3.0792 3.8217 -2.1248 35 1 3.3127 5.0498 -0.0044 36 1 2.7328 3.9568 2.1233 37 1 3.0478 2.5729 3.6640 38 1 1.3765 3.1651 3.5090 39 1 1.9812 2.8803 6.1197 40 1 0.9833 0.2893 6.9771 41 1 2.0561 3.5214 7.7493 42 1 0.8803 3.5525 10.3169 43 1 2.5518 2.9608 10.4726 44 1 3.3805 4.9990 9.3297 45 1 1.7092 5.5912 9.1737 46 1 3.5715 8.5080 10.4318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273229939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:07 Heat of formation + Delta-G solvation = -73.183776 kcal Electronic energy + Delta-G solvation = -27459.286020 eV Core-core repulsion = 23349.658799 eV Total energy + Delta-G solvation = -4109.627221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84736 -41.26081 -40.29380 -38.33628 -36.89773 -36.70192 -35.04041 -34.77561 -32.84764 -31.36760 -31.05905 -30.29548 -28.73349 -26.74830 -24.81800 -23.67884 -23.39504 -22.30349 -22.16335 -21.86401 -20.30026 -19.30685 -18.62849 -18.39927 -17.59880 -17.57065 -16.88633 -16.80812 -16.63735 -16.48082 -16.29962 -15.75263 -15.52232 -15.30599 -15.15925 -15.03639 -14.66566 -14.44345 -14.28283 -13.92512 -13.70273 -13.19961 -13.04628 -12.98044 -12.75032 -12.64341 -12.52126 -12.39956 -12.23689 -12.08162 -11.96607 -11.74115 -11.63096 -11.56459 -11.33211 -11.21437 -10.59586 -10.26034 -9.75003 -9.49700 -9.08500 -8.22594 -6.31098 0.41779 0.47602 0.51210 1.18788 1.42360 1.44830 1.56358 1.80913 1.93113 2.29371 2.44741 2.84574 3.13106 3.13229 3.77909 3.85432 3.94101 4.02297 4.05976 4.19465 4.32856 4.39715 4.42827 4.52962 4.53233 4.58097 4.67378 4.79877 4.88105 5.01067 5.11437 5.14444 5.19484 5.19584 5.37953 5.40523 5.44905 5.55148 5.58269 5.62315 5.66086 5.81445 5.86640 6.11204 6.18978 6.39225 6.54232 6.81927 7.09246 7.29658 7.37999 8.89114 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.001965 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.780195 B =14246.068196 C =16082.588218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.128 4.128 4 C -0.087 4.087 5 C -0.158 4.158 6 C -0.091 4.091 7 C -0.212 4.212 8 C 0.109 3.891 9 O -0.311 6.311 10 C 0.050 3.950 11 C 0.521 3.479 12 O -0.557 6.557 13 N -0.510 5.510 14 N -0.528 5.528 15 C 0.713 3.287 16 O -0.615 6.615 17 N -0.724 5.724 18 C 0.155 3.845 19 C 0.023 3.977 20 C -0.544 4.544 21 H 0.058 0.942 22 C 0.010 3.990 23 N -0.923 5.923 24 Si 0.960 3.040 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.278 1.278 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.438 0.562 40 H 0.441 0.559 41 H 0.405 0.595 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.015 0.985 45 H 0.014 0.986 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.390 -7.025 -26.824 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.129 4.129 4 C -0.105 4.105 5 C -0.176 4.176 6 C -0.109 4.109 7 C -0.230 4.230 8 C 0.064 3.936 9 O -0.224 6.224 10 C -0.029 4.029 11 C 0.307 3.693 12 O -0.432 6.432 13 N -0.265 5.265 14 N -0.285 5.285 15 C 0.412 3.588 16 O -0.492 6.492 17 N -0.380 5.380 18 C 0.031 3.969 19 C -0.015 4.015 20 C -0.583 4.583 21 H 0.076 0.924 22 C -0.189 4.189 23 N -0.563 5.563 24 Si 0.785 3.215 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.204 1.204 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.170 0.830 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.283 0.717 40 H 0.286 0.714 41 H 0.241 0.759 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.033 0.967 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.865 -8.188 -26.156 27.422 hybrid contribution 0.246 0.880 0.801 1.215 sum -0.619 -7.308 -25.355 26.395 Atomic orbital electron populations 1.21657 0.94757 1.01872 1.01392 1.20358 0.96254 0.92103 1.02619 1.19506 1.04782 0.97604 0.90996 1.21161 0.97153 0.95331 0.96886 1.21411 1.02032 0.94921 0.99253 1.21307 0.97234 1.00705 0.91690 1.21576 1.06145 0.94078 1.01243 1.19044 0.97266 0.92344 0.84912 1.86077 1.82600 1.41196 1.12516 1.22475 1.06019 0.93643 0.80797 1.20755 0.77930 0.87764 0.82818 1.90780 1.47122 1.20027 1.85297 1.44615 1.68011 1.15295 0.98533 1.44396 1.71991 1.15609 0.96455 1.15776 0.78874 0.82576 0.81587 1.90987 1.58495 1.61897 1.37845 1.45196 1.69590 1.12054 1.11187 1.21244 1.00092 0.94769 0.80784 1.19149 0.95975 0.89575 0.96762 1.21484 1.44309 0.98630 0.93849 0.92374 1.25777 0.94757 0.97534 1.00870 1.70026 1.44939 1.09998 1.31296 0.85471 0.77826 0.78318 0.79881 1.19164 1.20425 1.20407 0.91956 0.91994 0.94309 0.89699 0.92489 0.83683 0.83827 0.83604 0.83034 0.84993 0.85033 0.71703 0.71379 0.75853 0.93179 0.93185 0.96713 0.96717 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.90 71.98 0.71 -1.59 16 2 C -0.08 -1.28 5.79 29.85 0.17 -1.11 16 3 C -0.13 -2.20 5.15 -19.77 -0.10 -2.30 16 4 C -0.09 -1.15 9.68 22.25 0.22 -0.94 16 5 C -0.16 -1.82 10.04 22.28 0.22 -1.60 16 6 C -0.09 -1.06 10.04 22.25 0.22 -0.84 16 7 C -0.21 -2.79 9.04 22.36 0.20 -2.59 16 8 C 0.11 1.93 6.66 22.50 0.15 2.08 16 9 O -0.31 -6.15 8.81 -73.37 -0.65 -6.80 16 10 C 0.05 0.63 5.22 71.24 0.37 1.00 16 11 C 0.52 10.25 8.02 87.66 0.70 10.96 16 12 O -0.56 -16.27 16.34 16.02 0.26 -16.01 16 13 N -0.51 -9.15 6.26 -173.54 -1.09 -10.24 16 14 N -0.53 -13.43 6.26 -184.75 -1.16 -14.59 16 15 C 0.71 22.99 8.68 179.05 1.55 24.55 16 16 O -0.62 -25.29 17.18 -3.98 -0.07 -25.36 16 17 N -0.72 -22.18 5.52 -478.55 -2.64 -24.82 16 18 C 0.15 6.09 5.61 86.38 0.48 6.58 16 19 C 0.02 1.05 5.09 29.85 0.15 1.20 16 20 C -0.54 -28.71 9.11 25.60 0.23 -28.48 16 21 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 22 C 0.01 0.52 5.46 84.66 0.46 0.98 16 23 N -0.92 -51.14 13.29 21.45 0.28 -50.85 16 24 Si 0.96 42.00 29.54 68.60 2.03 44.03 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 1.09 8.05 -2.39 -0.02 1.07 16 32 H 0.06 1.18 7.69 -2.39 -0.02 1.16 16 33 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.14 0.99 8.06 -2.91 -0.02 0.96 16 35 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.15 1.17 6.30 -2.91 -0.02 1.15 16 37 H 0.13 0.86 7.66 -2.39 -0.02 0.84 16 38 H 0.13 0.86 7.66 -2.39 -0.02 0.84 16 39 H 0.44 5.17 6.70 -213.31 -1.43 3.74 16 40 H 0.44 11.64 8.10 -213.33 -1.73 9.91 16 41 H 0.40 9.54 6.39 -92.71 -0.59 8.95 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -74.95 393.76 0.01 -74.94 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -2.72 Total: 21.80 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 5.76 Total: 7.91 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -4.60 Total: -100.51 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.45 Total: -48.16 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -74.95 0.01 -74.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273229939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.756 kcal (2) G-P(sol) polarization free energy of solvation -74.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds