Wall clock time and date at job start Tue Mar 31 2020 20:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47011 * 2 1 4 4 C 1.38133 * 120.03523 * 264.99899 * 3 2 1 5 5 C 1.38265 * 120.07407 * 180.25285 * 4 3 2 6 6 C 1.38306 * 120.14784 * 359.44555 * 5 4 3 7 7 N 1.47999 * 119.96128 * 180.25352 * 6 5 4 8 8 O 1.21800 * 120.00005 * 180.29911 * 7 6 5 9 9 O 1.21803 * 120.00067 * 0.29796 * 7 6 5 10 10 C 1.38081 * 120.07887 * 0.55315 * 6 5 4 11 11 C 1.38886 * 120.04213 * 84.97143 * 3 2 1 12 12 N 1.39676 * 120.07123 * 0.04885 * 11 3 2 13 13 C 1.46500 * 119.99636 * 179.97438 * 12 11 3 14 14 C 1.50703 * 109.46869 * 179.97438 * 13 12 11 15 15 O 1.21277 * 120.00191 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99653 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00258 * 359.97438 * 16 14 13 18 18 C 1.52995 * 109.47152 * 90.00130 * 17 16 14 19 19 C 1.46501 * 119.99742 * 180.02562 * 16 14 13 20 20 C 1.50706 * 109.47317 * 89.99730 * 19 16 14 21 21 H 1.08000 * 119.99719 * 0.02562 * 20 19 16 22 22 C 1.37875 * 120.00158 * 180.02562 * 20 19 16 23 23 N 1.31516 * 120.00078 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99894 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46909 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47372 * 119.99463 * 24 22 20 27 27 H 1.48499 * 109.46963 * 239.99879 * 24 22 20 28 28 H 1.08998 * 109.46968 * 60.00561 * 1 2 3 29 29 H 1.08997 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47592 * 300.00221 * 1 2 3 31 31 H 1.08998 * 109.47592 * 239.99779 * 2 1 3 32 32 H 1.08998 * 109.46968 * 119.99439 * 2 1 3 33 33 H 1.08002 * 119.95961 * 359.97131 * 4 3 2 34 34 H 1.08001 * 119.92315 * 179.69829 * 5 4 3 35 35 H 1.07998 * 120.04499 * 179.74434 * 10 6 5 36 36 H 0.96995 * 120.00298 * 359.97438 * 12 11 3 37 37 H 1.09004 * 109.47369 * 299.99458 * 13 12 11 38 38 H 1.08999 * 109.47278 * 60.00072 * 13 12 11 39 39 H 1.09004 * 109.46820 * 210.00283 * 17 16 14 40 40 H 1.09000 * 109.46933 * 330.00257 * 17 16 14 41 41 H 1.09004 * 109.46776 * 59.99547 * 18 17 16 42 42 H 1.08996 * 109.47399 * 179.97438 * 18 17 16 43 43 H 1.09001 * 109.47293 * 300.00338 * 18 17 16 44 44 H 1.08996 * 109.47310 * 209.99817 * 19 16 14 45 45 H 1.09003 * 109.47218 * 330.00288 * 19 16 14 46 46 H 0.96994 * 119.99560 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0379 -1.1913 5 6 2.8269 3.3397 -1.1918 6 6 2.9546 4.0322 -0.0014 7 7 3.4484 5.4274 -0.0072 8 8 3.5663 6.0361 1.0412 9 8 3.7369 5.9669 -1.0605 10 6 2.6278 3.4214 1.1931 11 6 2.1647 2.1115 1.1977 12 7 1.8336 1.4903 2.4041 13 6 1.9744 2.2202 3.6665 14 6 1.5544 1.3325 4.8095 15 8 1.1752 0.2013 4.5912 16 7 1.6011 1.7952 6.0745 17 6 2.0607 3.1610 6.3384 18 6 0.8663 4.1165 6.3047 19 6 1.1933 0.9320 7.1858 20 6 2.3880 0.1642 7.6901 21 1 3.3544 0.3055 7.2293 22 6 2.2472 -0.7185 8.7398 23 7 1.0704 -0.8901 9.3014 24 14 3.7282 -1.6696 9.3654 25 1 4.9265 -1.2986 8.5706 26 1 3.9604 -1.3404 10.7947 27 1 3.4751 -3.1264 9.2278 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.2583 1.5014 -2.1230 34 1 3.0879 3.8182 -2.1242 35 1 2.7316 3.9613 2.1226 36 1 1.5105 0.5758 2.4061 37 1 3.0146 2.5176 3.8002 38 1 1.3425 3.1081 3.6453 39 1 2.5316 3.2024 7.3206 40 1 2.7827 3.4549 5.5766 41 1 0.1442 3.8224 7.0665 42 1 1.2081 5.1326 6.5015 43 1 0.3953 4.0750 5.3226 44 1 0.7882 1.5441 7.9916 45 1 0.4309 0.2329 6.8420 46 1 0.9715 -1.5109 10.0401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290510723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:47 Heat of formation + Delta-G solvation = -19.529409 kcal Electronic energy + Delta-G solvation = -28929.476023 eV Core-core repulsion = 24822.175430 eV Total energy + Delta-G solvation = -4107.300593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.25285 -40.39042 -39.27559 -36.64907 -35.97330 -35.34568 -34.61504 -32.91815 -30.78592 -30.42077 -30.17264 -28.07651 -26.73485 -26.11877 -23.65516 -23.22523 -23.07475 -21.95049 -21.41777 -19.73234 -18.81060 -18.53469 -17.59769 -17.14755 -16.69346 -16.48595 -16.10745 -15.73340 -15.39433 -15.30036 -14.57520 -14.36308 -14.15484 -14.01300 -13.93521 -13.56651 -13.32415 -13.18081 -12.79089 -12.42640 -12.22764 -12.16251 -12.08328 -11.74352 -11.65201 -11.55139 -11.34090 -11.25791 -11.21929 -11.17552 -11.01337 -10.91475 -10.69048 -10.59580 -10.25367 -9.75528 -9.58023 -9.27469 -8.54495 -7.91981 -7.85645 -6.15519 -4.20837 -0.27561 0.92189 1.29219 1.31500 2.93033 3.05395 3.14757 3.22532 3.30590 3.34309 3.74803 4.18896 4.28580 4.34926 4.51059 4.59429 4.68223 4.82722 4.93641 5.03090 5.08202 5.15672 5.17505 5.19645 5.25014 5.29650 5.47832 5.50179 5.56540 5.63422 5.65241 5.71934 5.90058 5.91676 5.96759 6.03307 6.11298 6.32019 6.36699 6.72251 6.92614 7.25941 7.34370 7.42144 7.56721 7.79843 8.09470 8.16432 8.66543 8.85890 9.44782 10.92678 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.002891 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.941191 B = 9681.461597 C =10805.635625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.107 4.107 4 C -0.069 4.069 5 C -0.118 4.118 6 C 0.002 3.998 7 N 0.030 4.970 8 O -0.162 6.162 9 O -0.166 6.166 10 C -0.145 4.145 11 C 0.233 3.767 12 N -0.718 5.718 13 C 0.094 3.906 14 C 0.502 3.498 15 O -0.539 6.539 16 N -0.588 5.588 17 C 0.101 3.899 18 C -0.170 4.170 19 C 0.246 3.754 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.419 0.581 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.035 0.965 45 H 0.044 0.956 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 7.812 -18.996 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.088 4.088 5 C -0.140 4.140 6 C -0.081 4.081 7 N 0.548 4.452 8 O -0.378 6.378 9 O -0.381 6.381 10 C -0.169 4.169 11 C 0.125 3.875 12 N -0.349 5.349 13 C -0.034 4.034 14 C 0.287 3.713 15 O -0.417 6.417 16 N -0.319 5.319 17 C -0.023 4.023 18 C -0.228 4.228 19 C 0.127 3.873 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.260 0.740 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.023 6.521 -18.688 19.793 hybrid contribution 0.877 -0.340 0.608 1.120 sum 0.854 6.181 -18.080 19.126 Atomic orbital electron populations 1.21771 0.93976 1.02504 1.02468 1.20539 0.96750 0.91390 1.03797 1.19864 1.02308 0.97559 0.91434 1.20777 0.97102 0.93158 0.97802 1.20730 1.01500 0.94971 0.96766 1.20697 1.08546 0.82312 0.96580 1.43667 0.98050 1.03158 1.00302 1.94542 1.57167 1.64811 1.21279 1.94516 1.52765 1.70101 1.20684 1.20335 1.04265 0.94505 0.97821 1.17305 0.93318 0.90405 0.86508 1.44639 1.71112 1.17504 1.01645 1.21374 1.02661 0.95585 0.83791 1.20019 0.79589 0.87589 0.84122 1.90666 1.48021 1.19270 1.83738 1.48242 1.63066 1.13788 1.06810 1.21525 0.95938 0.81795 1.03020 1.22224 0.99350 0.99184 1.02086 1.19343 0.96382 0.89172 0.82361 1.21435 0.95191 1.23980 1.16208 0.92376 1.24934 0.96161 0.96569 0.96363 1.69935 1.22544 1.36484 1.24222 0.86433 0.82586 0.79842 0.78512 1.19800 1.20853 1.20843 0.92369 0.91702 0.92211 0.90036 0.90368 0.83780 0.83503 0.83137 0.73990 0.89200 0.89237 0.89404 0.91555 0.91869 0.91709 0.93122 0.94672 0.93789 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.09 -0.71 5.50 -27.88 -0.15 -0.86 16 3 C -0.11 -0.98 5.15 -104.42 -0.54 -1.52 16 4 C -0.07 -0.54 9.68 -39.61 -0.38 -0.92 16 5 C -0.12 -1.09 9.55 -39.55 -0.38 -1.46 16 6 C 0.00 0.02 6.85 -79.99 -0.55 -0.53 16 7 N 0.03 0.39 4.45 33.94 0.15 0.54 16 8 O -0.16 -2.29 18.44 -29.46 -0.54 -2.84 16 9 O -0.17 -2.25 18.44 -29.46 -0.54 -2.79 16 10 C -0.14 -1.63 8.82 -39.38 -0.35 -1.97 16 11 C 0.23 2.55 6.63 -83.78 -0.56 2.00 16 12 N -0.72 -8.93 5.61 -59.80 -0.34 -9.27 16 13 C 0.09 1.23 3.95 -5.19 -0.02 1.21 16 14 C 0.50 9.25 7.74 -10.98 -0.09 9.16 16 15 O -0.54 -12.03 15.25 5.56 0.08 -11.95 16 16 N -0.59 -11.27 2.46 -175.06 -0.43 -11.70 16 17 C 0.10 1.46 5.93 -4.05 -0.02 1.43 16 18 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 19 C 0.25 6.04 5.16 -5.19 -0.03 6.02 16 20 C -0.53 -14.34 9.39 -34.44 -0.32 -14.66 16 21 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 24 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.50 8.05 -51.93 -0.42 0.09 16 32 H 0.08 0.72 6.82 -51.93 -0.35 0.37 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.15 1.14 7.60 -52.49 -0.40 0.74 16 35 H 0.15 1.62 6.28 -52.49 -0.33 1.29 16 36 H 0.42 5.63 5.55 -40.82 -0.23 5.40 16 37 H 0.09 1.06 7.21 -51.93 -0.37 0.69 16 38 H 0.09 1.00 6.99 -51.93 -0.36 0.64 16 39 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 40 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.58 7.22 -51.93 -0.37 0.20 16 44 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 45 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 46 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -31.85 389.34 -9.24 -41.10 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.48 Total: 2.81 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.73 Total: -3.02 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.12 Total: -45.38 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.00 Total: -17.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.85 -9.24 -41.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290510723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.568 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds