Wall clock time and date at job start Tue Mar 31 2020 20:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47011 * 2 1 4 4 C 1.38133 * 120.03523 * 264.99899 * 3 2 1 5 5 C 1.38265 * 120.07407 * 180.25285 * 4 3 2 6 6 C 1.38306 * 120.14784 * 359.44555 * 5 4 3 7 7 N 1.47999 * 119.96128 * 180.25352 * 6 5 4 8 8 O 1.21800 * 120.00005 * 180.29911 * 7 6 5 9 9 O 1.21803 * 120.00067 * 0.29796 * 7 6 5 10 10 C 1.38081 * 120.07887 * 0.55315 * 6 5 4 11 11 C 1.38886 * 120.04213 * 84.97143 * 3 2 1 12 12 N 1.39676 * 120.07123 * 0.04885 * 11 3 2 13 13 C 1.46500 * 119.99636 * 179.97438 * 12 11 3 14 14 C 1.50703 * 109.46869 * 179.97438 * 13 12 11 15 15 O 1.21277 * 120.00191 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99653 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00258 * 359.97438 * 16 14 13 18 18 C 1.52995 * 109.47152 * 90.00130 * 17 16 14 19 19 C 1.46501 * 119.99742 * 180.02562 * 16 14 13 20 20 C 1.50706 * 109.47317 * 89.99730 * 19 16 14 21 21 H 1.08000 * 119.99719 * 0.02562 * 20 19 16 22 22 C 1.37875 * 120.00158 * 180.02562 * 20 19 16 23 23 N 1.31516 * 120.00078 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99894 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46909 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47372 * 119.99463 * 24 22 20 27 27 H 1.48499 * 109.46963 * 239.99879 * 24 22 20 28 28 H 1.08998 * 109.46968 * 60.00561 * 1 2 3 29 29 H 1.08997 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47592 * 300.00221 * 1 2 3 31 31 H 1.08998 * 109.47592 * 239.99779 * 2 1 3 32 32 H 1.08998 * 109.46968 * 119.99439 * 2 1 3 33 33 H 1.08002 * 119.95961 * 359.97131 * 4 3 2 34 34 H 1.08001 * 119.92315 * 179.69829 * 5 4 3 35 35 H 1.07998 * 120.04499 * 179.74434 * 10 6 5 36 36 H 0.96995 * 120.00298 * 359.97438 * 12 11 3 37 37 H 1.09004 * 109.47369 * 299.99458 * 13 12 11 38 38 H 1.08999 * 109.47278 * 60.00072 * 13 12 11 39 39 H 1.09004 * 109.46820 * 210.00283 * 17 16 14 40 40 H 1.09000 * 109.46933 * 330.00257 * 17 16 14 41 41 H 1.09004 * 109.46776 * 59.99547 * 18 17 16 42 42 H 1.08996 * 109.47399 * 179.97438 * 18 17 16 43 43 H 1.09001 * 109.47293 * 300.00338 * 18 17 16 44 44 H 1.08996 * 109.47310 * 209.99817 * 19 16 14 45 45 H 1.09003 * 109.47218 * 330.00288 * 19 16 14 46 46 H 0.96994 * 119.99560 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0379 -1.1913 5 6 2.8269 3.3397 -1.1918 6 6 2.9546 4.0322 -0.0014 7 7 3.4484 5.4274 -0.0072 8 8 3.5663 6.0361 1.0412 9 8 3.7369 5.9669 -1.0605 10 6 2.6278 3.4214 1.1931 11 6 2.1647 2.1115 1.1977 12 7 1.8336 1.4903 2.4041 13 6 1.9744 2.2202 3.6665 14 6 1.5544 1.3325 4.8095 15 8 1.1752 0.2013 4.5912 16 7 1.6011 1.7952 6.0745 17 6 2.0607 3.1610 6.3384 18 6 0.8663 4.1165 6.3047 19 6 1.1933 0.9320 7.1858 20 6 2.3880 0.1642 7.6901 21 1 3.3544 0.3055 7.2293 22 6 2.2472 -0.7185 8.7398 23 7 1.0704 -0.8901 9.3014 24 14 3.7282 -1.6696 9.3654 25 1 4.9265 -1.2986 8.5706 26 1 3.9604 -1.3404 10.7947 27 1 3.4751 -3.1264 9.2278 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.2583 1.5014 -2.1230 34 1 3.0879 3.8182 -2.1242 35 1 2.7316 3.9613 2.1226 36 1 1.5105 0.5758 2.4061 37 1 3.0146 2.5176 3.8002 38 1 1.3425 3.1081 3.6453 39 1 2.5316 3.2024 7.3206 40 1 2.7827 3.4549 5.5766 41 1 0.1442 3.8224 7.0665 42 1 1.2081 5.1326 6.5015 43 1 0.3953 4.0750 5.3226 44 1 0.7882 1.5441 7.9916 45 1 0.4309 0.2329 6.8420 46 1 0.9715 -1.5109 10.0401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290510723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:46 Heat of formation + Delta-G solvation = -37.405184 kcal Electronic energy + Delta-G solvation = -28930.251174 eV Core-core repulsion = 24822.175430 eV Total energy + Delta-G solvation = -4108.075745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.20301 -41.36362 -40.57016 -37.64145 -37.25307 -36.52602 -35.37840 -34.91173 -31.80629 -31.51106 -31.20260 -29.50967 -27.90712 -27.25449 -24.94115 -24.41872 -24.22130 -22.99042 -22.19813 -20.71494 -19.99453 -19.64616 -18.68066 -18.55934 -18.21672 -17.81493 -17.05872 -16.85233 -16.65235 -16.46878 -16.10147 -15.32562 -15.11048 -15.01659 -14.72956 -14.66067 -14.55206 -14.21122 -14.04414 -13.71169 -13.58099 -13.29828 -13.10818 -13.03982 -12.86874 -12.71401 -12.63179 -12.52475 -12.37382 -12.25532 -12.21797 -12.00340 -11.97757 -11.90005 -11.72804 -11.49752 -10.81931 -10.67832 -10.30212 -9.55147 -8.73851 -8.26033 -6.40476 -1.18815 0.18908 0.40468 0.42747 1.35033 1.36589 1.48027 1.62360 1.86528 2.33348 2.38136 2.47790 3.04363 3.42410 3.49634 3.56594 3.76373 3.85224 3.98772 4.08813 4.16326 4.23809 4.27195 4.39235 4.39907 4.45605 4.57668 4.60332 4.77578 4.87089 4.89752 4.94603 4.97232 5.02683 5.06583 5.17101 5.17528 5.27376 5.32973 5.35930 5.48819 5.52657 5.76500 5.91542 6.01561 6.42222 6.54899 6.63110 6.71145 7.18432 7.34113 8.81374 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.002891 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.941191 B = 9681.461597 C =10805.635625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.100 4.100 4 C -0.057 4.057 5 C -0.108 4.108 6 C -0.016 4.016 7 N 0.031 4.969 8 O -0.191 6.191 9 O -0.170 6.170 10 C -0.152 4.152 11 C 0.219 3.781 12 N -0.727 5.727 13 C 0.111 3.889 14 C 0.494 3.506 15 O -0.587 6.587 16 N -0.595 5.595 17 C 0.095 3.905 18 C -0.163 4.163 19 C 0.263 3.737 20 C -0.543 4.543 21 H 0.054 0.946 22 C 0.009 3.991 23 N -0.927 5.927 24 Si 0.966 3.034 25 H -0.267 1.267 26 H -0.271 1.271 27 H -0.282 1.282 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.184 0.816 34 H 0.165 0.835 35 H 0.151 0.849 36 H 0.413 0.587 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.040 0.960 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.024 0.976 45 H 0.000 1.000 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.801 8.276 -21.339 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.076 4.076 5 C -0.129 4.129 6 C -0.100 4.100 7 N 0.546 4.454 8 O -0.402 6.402 9 O -0.386 6.386 10 C -0.176 4.176 11 C 0.113 3.887 12 N -0.359 5.359 13 C -0.017 4.017 14 C 0.282 3.718 15 O -0.468 6.468 16 N -0.325 5.325 17 C -0.027 4.027 18 C -0.221 4.221 19 C 0.142 3.858 20 C -0.581 4.581 21 H 0.072 0.928 22 C -0.190 4.190 23 N -0.567 5.567 24 Si 0.791 3.209 25 H -0.192 1.192 26 H -0.196 1.196 27 H -0.208 1.208 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.201 0.799 34 H 0.182 0.818 35 H 0.169 0.831 36 H 0.253 0.747 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.060 0.940 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.018 0.982 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.292 7.070 -21.024 22.218 hybrid contribution 0.424 -0.522 1.220 1.393 sum 1.716 6.547 -19.804 20.928 Atomic orbital electron populations 1.21753 0.94031 1.02694 1.02052 1.20584 0.96595 0.90803 1.04380 1.20147 1.01090 0.97939 0.91344 1.21178 0.95285 0.92477 0.98658 1.21093 0.99938 0.95258 0.96604 1.20866 1.10072 0.81398 0.97632 1.43937 0.97673 1.03849 0.99964 1.94532 1.58471 1.65659 1.21495 1.94491 1.52772 1.70669 1.20670 1.20346 1.04627 0.94617 0.98016 1.17411 0.94258 0.90520 0.86501 1.44579 1.72204 1.17305 1.01853 1.21263 1.03867 0.94663 0.81891 1.20918 0.78343 0.87643 0.84895 1.90634 1.49922 1.21677 1.84550 1.48217 1.63182 1.15079 1.06043 1.21837 0.97617 0.79594 1.03683 1.22165 0.97901 1.00050 1.01955 1.18746 0.94623 0.88913 0.83561 1.21722 0.95590 1.24468 1.16330 0.92773 1.25823 0.99012 0.97532 0.96626 1.70049 1.24586 1.37260 1.24794 0.85390 0.79089 0.78086 0.78380 1.19156 1.19578 1.20766 0.90898 0.91299 0.94436 0.87279 0.91958 0.79904 0.81760 0.83107 0.74703 0.87369 0.86893 0.90501 0.88015 0.94049 0.88588 0.92148 0.95795 0.98177 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.89 71.98 0.71 -1.44 16 2 C -0.09 -1.20 5.50 29.85 0.16 -1.04 16 3 C -0.10 -1.58 5.15 -19.73 -0.10 -1.68 16 4 C -0.06 -0.66 9.68 22.25 0.22 -0.44 16 5 C -0.11 -1.62 9.55 22.29 0.21 -1.41 16 6 C -0.02 -0.34 6.85 36.36 0.25 -0.09 16 7 N 0.03 0.79 4.45 -46.53 -0.21 0.58 16 8 O -0.19 -5.30 18.44 18.89 0.35 -4.96 16 9 O -0.17 -4.37 18.44 18.88 0.35 -4.02 16 10 C -0.15 -3.15 8.82 22.40 0.20 -2.95 16 11 C 0.22 4.45 6.63 38.21 0.25 4.71 16 12 N -0.73 -17.64 5.61 -343.12 -1.92 -19.56 16 13 C 0.11 2.78 3.95 85.63 0.34 3.12 16 14 C 0.49 18.56 7.74 87.66 0.68 19.24 16 15 O -0.59 -27.41 15.25 -3.02 -0.05 -27.46 16 16 N -0.59 -23.34 2.46 -826.15 -2.03 -25.37 16 17 C 0.09 2.66 5.93 86.38 0.51 3.17 16 18 C -0.16 -3.74 10.24 71.98 0.74 -3.01 16 19 C 0.26 13.56 5.16 85.63 0.44 14.01 16 20 C -0.54 -30.25 9.39 25.60 0.24 -30.01 16 21 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 22 C 0.01 0.52 5.46 84.65 0.46 0.98 16 23 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 24 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 0.93 8.05 -2.39 -0.02 0.91 16 32 H 0.06 1.10 6.82 -2.39 -0.02 1.08 16 33 H 0.18 0.73 8.06 -2.91 -0.02 0.70 16 34 H 0.16 1.92 7.60 -2.91 -0.02 1.90 16 35 H 0.15 3.02 6.28 -2.91 -0.02 3.00 16 36 H 0.41 11.24 5.55 -92.71 -0.51 10.72 16 37 H 0.11 2.33 7.21 -2.39 -0.02 2.32 16 38 H 0.11 2.31 6.99 -2.39 -0.02 2.29 16 39 H 0.08 2.33 8.07 -2.38 -0.02 2.31 16 40 H 0.10 2.13 6.44 -2.39 -0.02 2.12 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.27 7.22 -2.39 -0.02 1.26 16 44 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 45 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 46 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -72.96 389.34 4.61 -68.35 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.49 Total: 17.90 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 5.31 Total: 3.15 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -3.88 Total: -98.93 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: 0.65 Total: -36.44 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -72.96 4.61 -68.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290510723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.947 kcal (2) G-P(sol) polarization free energy of solvation -72.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds