Wall clock time and date at job start Tue Mar 31 2020 19:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 119.99808 * 2 1 4 4 N 1.46496 * 109.47450 * 125.00313 * 3 2 1 5 5 C 1.46491 * 120.00453 * 89.99431 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.00133 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48501 * 109.47188 * 90.00793 * 10 8 6 12 12 H 1.48501 * 109.47085 * 210.00372 * 10 8 6 13 13 H 1.48498 * 109.47634 * 330.00608 * 10 8 6 14 14 C 1.34780 * 119.99526 * 269.99934 * 4 3 2 15 15 O 1.21285 * 119.99673 * 179.97438 * 14 4 3 16 16 C 1.50700 * 120.00400 * 359.97438 * 14 4 3 17 17 N 1.46500 * 109.47311 * 179.97438 * 16 14 4 18 18 C 1.33792 * 124.17592 * 269.69985 * 17 16 14 19 19 O 1.21529 * 123.77567 * 0.04259 * 18 17 16 20 20 N 1.34527 * 112.45238 * 179.86338 * 18 17 16 21 21 C 1.47317 * 106.62188 * 0.38588 * 20 18 17 22 22 C 1.52998 * 110.60048 * 241.25067 * 21 20 18 23 23 C 1.53001 * 110.72913 * 118.36512 * 21 20 18 24 24 C 1.52997 * 117.49556 * 139.49879 * 23 21 20 25 25 C 1.52998 * 117.49700 * 70.84183 * 23 21 20 26 26 C 1.34768 * 124.17552 * 90.00277 * 17 16 14 27 27 O 1.21232 * 127.15849 * 0.02562 * 26 17 16 28 28 H 1.08000 * 119.99545 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99777 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99777 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47180 * 4.99478 * 3 2 1 32 32 H 1.09006 * 109.46942 * 245.00229 * 3 2 1 33 33 H 1.09004 * 109.47166 * 330.00399 * 5 4 3 34 34 H 1.08994 * 109.47507 * 210.00106 * 5 4 3 35 35 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.47359 * 300.00599 * 16 14 4 37 37 H 1.09008 * 109.46888 * 59.99948 * 16 14 4 38 38 H 0.96998 * 126.69219 * 180.19601 * 20 18 17 39 39 H 1.08995 * 109.47198 * 174.87708 * 22 21 20 40 40 H 1.09000 * 109.46990 * 294.87780 * 22 21 20 41 41 H 1.09003 * 109.47002 * 54.86630 * 22 21 20 42 42 H 1.08997 * 115.55112 * 285.16796 * 23 21 20 43 43 H 1.08994 * 117.50271 * 0.02562 * 24 23 21 44 44 H 1.09001 * 117.49975 * 145.02460 * 24 23 21 45 45 H 1.09006 * 117.49852 * 214.97655 * 25 23 21 46 46 H 1.09005 * 117.50095 * 359.97348 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 4.3589 0.8258 0.9694 6 6 5.2615 1.9481 0.5258 7 1 4.8587 2.9394 0.3796 8 6 6.6030 1.7108 0.3127 9 7 7.0936 0.5037 0.4911 10 14 7.7232 3.1036 -0.2297 11 1 8.2874 3.7795 0.9662 12 1 8.8287 2.5564 -1.0565 13 1 6.9443 4.0824 -1.0300 14 6 2.5937 1.8224 2.3213 15 8 3.3637 1.8442 3.2580 16 6 1.1895 2.3436 2.4878 17 7 1.0039 2.8164 3.8619 18 6 0.5642 2.0509 4.8672 19 8 0.2722 0.8775 4.7452 20 7 0.4851 2.7242 6.0292 21 6 0.9191 4.1035 5.7473 22 6 2.1600 4.4562 6.5699 23 6 -0.2114 5.0952 6.0293 24 6 0.1597 6.4150 6.7083 25 6 -0.5917 5.3358 7.4916 26 6 1.2493 4.0778 4.2682 27 8 1.6498 5.0003 3.5912 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4026 -0.9315 33 1 4.3667 0.0351 0.2190 34 1 4.7141 0.4280 1.9200 35 1 8.0373 0.3366 0.3408 36 1 1.0231 3.1676 1.7940 37 1 0.4782 1.5442 2.2798 38 1 0.1959 2.3712 6.8851 39 1 2.5184 5.4442 6.2814 40 1 1.9051 4.4572 7.6296 41 1 2.9404 3.7180 6.3847 42 1 -1.0127 5.1171 5.2907 43 1 1.2093 6.5771 6.9537 44 1 -0.3977 7.3052 6.4167 45 1 -1.6432 5.5164 7.7151 46 1 -0.0368 4.7873 8.2528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292468930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:27 Heat of formation + Delta-G solvation = -16.204850 kcal Electronic energy + Delta-G solvation = -30145.069868 eV Core-core repulsion = 26037.913439 eV Total energy + Delta-G solvation = -4107.156429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.61169 -39.23348 -38.66940 -38.00077 -35.87315 -35.69512 -34.39818 -33.23341 -32.07846 -30.31206 -29.19036 -27.16315 -25.79941 -25.39702 -23.20275 -23.12069 -22.74651 -21.11090 -20.06482 -19.96245 -18.62116 -17.89176 -17.33111 -16.96686 -16.44940 -16.11423 -16.01905 -15.58310 -15.48686 -14.96134 -14.78924 -14.66752 -14.21267 -14.01984 -13.92194 -13.57822 -13.17871 -12.95563 -12.89981 -12.52044 -12.45812 -12.04343 -11.83186 -11.69944 -11.62533 -11.28296 -11.17964 -11.10212 -10.89916 -10.85812 -10.59091 -10.49889 -10.23037 -10.14651 -10.04299 -9.65877 -9.57918 -9.30346 -8.85682 -8.43180 -7.75938 -6.04407 -4.09155 1.65571 2.09361 2.38824 2.93115 3.05880 3.25469 3.32280 3.34646 3.38315 3.41870 3.89609 3.99216 4.13237 4.36683 4.45301 4.51319 4.65562 4.90766 4.95630 4.98898 5.12985 5.17793 5.21147 5.30419 5.31982 5.36412 5.38463 5.46669 5.50839 5.59987 5.62912 5.70055 5.73133 5.90834 6.01722 6.13413 6.71711 6.74997 6.82927 7.01602 7.05067 7.39515 7.41788 7.48400 7.91496 8.13022 8.21905 8.30440 8.84468 8.99719 9.55813 11.03751 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.003808 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.236682 B = 7351.378272 C = 8789.117358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C 0.132 3.868 4 N -0.588 5.588 5 C 0.247 3.753 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.273 1.273 14 C 0.498 3.502 15 O -0.529 6.529 16 C 0.096 3.904 17 N -0.558 5.558 18 C 0.711 3.289 19 O -0.539 6.539 20 N -0.718 5.718 21 C 0.156 3.844 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.163 4.163 25 C -0.166 4.166 26 C 0.538 3.462 27 O -0.456 6.456 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.437 0.563 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.739 8.029 10.047 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.178 4.178 3 C 0.008 3.992 4 N -0.320 5.320 5 C 0.129 3.871 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.282 3.718 15 O -0.406 6.406 16 C -0.029 4.029 17 N -0.303 5.303 18 C 0.411 3.589 19 O -0.412 6.412 20 N -0.382 5.382 21 C 0.065 3.935 22 C -0.211 4.211 23 C -0.178 4.178 24 C -0.200 4.200 25 C -0.203 4.203 26 C 0.324 3.676 27 O -0.324 6.324 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.281 0.719 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.021 7.773 9.956 22.007 hybrid contribution 0.567 0.383 -0.133 0.697 sum -17.454 8.156 9.823 21.625 Atomic orbital electron populations 1.23779 0.95671 1.01673 1.02358 1.23544 0.96101 0.99898 0.98212 1.20667 0.92304 0.94145 0.92109 1.48172 1.14711 1.60584 1.08517 1.19328 0.74869 0.94610 0.98338 1.21433 0.93380 0.95941 1.45869 0.92352 1.24931 0.97887 0.95804 0.95419 1.69938 1.14060 1.20195 1.49118 0.86493 0.80213 0.82086 0.78617 1.20572 1.21139 1.19836 1.20316 0.88406 0.79302 0.83774 1.90685 1.54800 1.55628 1.39478 1.21682 0.98395 1.02487 0.80338 1.45841 1.61171 1.12270 1.11039 1.15742 0.77615 0.84577 0.80923 1.91003 1.54174 1.12749 1.83319 1.45526 1.71638 1.10185 1.10811 1.20778 0.95865 0.83540 0.93309 1.22129 0.95264 1.04084 0.99671 1.22207 0.99625 0.98170 0.97757 1.23162 1.02264 0.92128 1.02470 1.23002 1.01599 1.02854 0.92865 1.20588 0.75765 0.82004 0.89256 1.90796 1.41010 1.38984 1.61591 0.88499 0.88742 0.86855 0.91211 0.88450 0.94691 0.93834 0.92710 0.86478 0.86117 0.71899 0.89493 0.90330 0.90364 0.86905 0.87478 0.88056 0.88155 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.30 13.86 29.01 0.40 -1.90 16 2 C -0.16 -2.26 9.74 -36.03 -0.35 -2.61 16 3 C 0.13 2.12 5.65 -5.20 -0.03 2.09 16 4 N -0.59 -12.64 2.44 -176.44 -0.43 -13.07 16 5 C 0.25 6.52 5.16 -5.20 -0.03 6.50 16 6 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 10 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.50 10.85 7.74 -10.98 -0.09 10.76 16 15 O -0.53 -13.85 16.01 5.55 0.09 -13.76 16 16 C 0.10 1.59 4.73 -5.19 -0.02 1.56 16 17 N -0.56 -9.07 2.09 -122.02 -0.26 -9.32 16 18 C 0.71 11.21 8.62 -88.02 -0.76 10.45 16 19 O -0.54 -10.12 17.48 5.34 0.09 -10.03 16 20 N -0.72 -8.07 5.91 -52.94 -0.31 -8.39 16 21 C 0.16 1.71 1.20 -132.09 -0.16 1.56 16 22 C -0.15 -1.53 7.66 37.16 0.28 -1.24 16 23 C -0.16 -1.30 5.41 -90.62 -0.49 -1.79 16 24 C -0.16 -1.08 9.73 -26.70 -0.26 -1.34 16 25 C -0.17 -0.94 9.88 -26.70 -0.26 -1.20 16 26 C 0.54 8.26 6.98 -10.56 -0.07 8.18 16 27 O -0.46 -8.07 17.76 5.60 0.10 -7.97 16 28 H 0.10 1.03 8.06 -52.49 -0.42 0.60 16 29 H 0.09 0.94 7.84 -52.49 -0.41 0.53 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.07 0.92 6.09 -51.93 -0.32 0.60 16 32 H 0.10 1.60 8.07 -51.93 -0.42 1.18 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.12 1.66 7.27 -51.93 -0.38 1.28 16 37 H 0.12 1.78 7.25 -51.92 -0.38 1.40 16 38 H 0.44 3.64 8.96 -40.82 -0.37 3.27 16 39 H 0.09 0.84 6.86 -51.93 -0.36 0.48 16 40 H 0.08 0.54 6.86 -51.93 -0.36 0.18 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.11 0.69 6.04 -51.93 -0.31 0.38 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 0.48 7.16 -51.93 -0.37 0.10 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -37.12 389.74 -7.93 -45.06 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.55 Total: 3.23 kcal Atomic # 6 Polarization: 19.55 SS G_CDS: -2.26 Total: 17.29 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.26 Total: -56.81 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: 0.28 Total: -31.76 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.12 -7.93 -45.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292468930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.854 kcal (2) G-P(sol) polarization free energy of solvation -37.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds