Wall clock time and date at job start Tue Mar 31 2020 19:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 119.99808 * 2 1 4 4 N 1.46496 * 109.47450 * 125.00313 * 3 2 1 5 5 C 1.46491 * 120.00453 * 89.99431 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.00133 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48501 * 109.47188 * 90.00793 * 10 8 6 12 12 H 1.48501 * 109.47085 * 210.00372 * 10 8 6 13 13 H 1.48498 * 109.47634 * 330.00608 * 10 8 6 14 14 C 1.34780 * 119.99526 * 269.99934 * 4 3 2 15 15 O 1.21285 * 119.99673 * 179.97438 * 14 4 3 16 16 C 1.50700 * 120.00400 * 359.97438 * 14 4 3 17 17 N 1.46500 * 109.47311 * 179.97438 * 16 14 4 18 18 C 1.33792 * 124.17592 * 269.69985 * 17 16 14 19 19 O 1.21529 * 123.77567 * 0.04259 * 18 17 16 20 20 N 1.34527 * 112.45238 * 179.86338 * 18 17 16 21 21 C 1.47317 * 106.62188 * 0.38588 * 20 18 17 22 22 C 1.52998 * 110.60048 * 241.25067 * 21 20 18 23 23 C 1.53001 * 110.72913 * 118.36512 * 21 20 18 24 24 C 1.52997 * 117.49556 * 139.49879 * 23 21 20 25 25 C 1.52998 * 117.49700 * 70.84183 * 23 21 20 26 26 C 1.34768 * 124.17552 * 90.00277 * 17 16 14 27 27 O 1.21232 * 127.15849 * 0.02562 * 26 17 16 28 28 H 1.08000 * 119.99545 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99777 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99777 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47180 * 4.99478 * 3 2 1 32 32 H 1.09006 * 109.46942 * 245.00229 * 3 2 1 33 33 H 1.09004 * 109.47166 * 330.00399 * 5 4 3 34 34 H 1.08994 * 109.47507 * 210.00106 * 5 4 3 35 35 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.47359 * 300.00599 * 16 14 4 37 37 H 1.09008 * 109.46888 * 59.99948 * 16 14 4 38 38 H 0.96998 * 126.69219 * 180.19601 * 20 18 17 39 39 H 1.08995 * 109.47198 * 174.87708 * 22 21 20 40 40 H 1.09000 * 109.46990 * 294.87780 * 22 21 20 41 41 H 1.09003 * 109.47002 * 54.86630 * 22 21 20 42 42 H 1.08997 * 115.55112 * 285.16796 * 23 21 20 43 43 H 1.08994 * 117.50271 * 0.02562 * 24 23 21 44 44 H 1.09001 * 117.49975 * 145.02460 * 24 23 21 45 45 H 1.09006 * 117.49852 * 214.97655 * 25 23 21 46 46 H 1.09005 * 117.50095 * 359.97348 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 4.3589 0.8258 0.9694 6 6 5.2615 1.9481 0.5258 7 1 4.8587 2.9394 0.3796 8 6 6.6030 1.7108 0.3127 9 7 7.0936 0.5037 0.4911 10 14 7.7232 3.1036 -0.2297 11 1 8.2874 3.7795 0.9662 12 1 8.8287 2.5564 -1.0565 13 1 6.9443 4.0824 -1.0300 14 6 2.5937 1.8224 2.3213 15 8 3.3637 1.8442 3.2580 16 6 1.1895 2.3436 2.4878 17 7 1.0039 2.8164 3.8619 18 6 0.5642 2.0509 4.8672 19 8 0.2722 0.8775 4.7452 20 7 0.4851 2.7242 6.0292 21 6 0.9191 4.1035 5.7473 22 6 2.1600 4.4562 6.5699 23 6 -0.2114 5.0952 6.0293 24 6 0.1597 6.4150 6.7083 25 6 -0.5917 5.3358 7.4916 26 6 1.2493 4.0778 4.2682 27 8 1.6498 5.0003 3.5912 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4026 -0.9315 33 1 4.3667 0.0351 0.2190 34 1 4.7141 0.4280 1.9200 35 1 8.0373 0.3366 0.3408 36 1 1.0231 3.1676 1.7940 37 1 0.4782 1.5442 2.2798 38 1 0.1959 2.3712 6.8851 39 1 2.5184 5.4442 6.2814 40 1 1.9051 4.4572 7.6296 41 1 2.9404 3.7180 6.3847 42 1 -1.0127 5.1171 5.2907 43 1 1.2093 6.5771 6.9537 44 1 -0.3977 7.3052 6.4167 45 1 -1.6432 5.5164 7.7151 46 1 -0.0368 4.7873 8.2528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292468930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:27 Heat of formation + Delta-G solvation = -42.442835 kcal Electronic energy + Delta-G solvation = -30146.207632 eV Core-core repulsion = 26037.913439 eV Total energy + Delta-G solvation = -4108.294193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.75474 -40.82946 -39.88196 -38.91606 -37.38083 -36.97385 -35.57138 -35.07341 -33.73452 -31.21400 -30.77836 -28.91872 -27.00926 -26.59883 -25.00415 -24.27880 -23.31199 -22.33888 -21.16923 -20.97238 -20.10594 -19.07842 -18.73048 -18.60760 -17.92358 -17.44126 -17.37088 -16.69936 -16.65849 -16.59096 -16.32321 -15.80190 -15.54833 -15.47007 -15.13398 -14.60538 -14.54014 -14.44117 -14.24717 -13.67629 -13.56134 -13.41197 -13.28795 -13.08835 -12.83490 -12.77095 -12.53818 -12.29293 -12.23399 -12.20299 -12.09188 -11.73259 -11.66316 -11.65786 -11.26414 -11.02035 -10.69466 -10.68396 -10.48964 -10.31316 -9.58598 -8.26130 -6.41001 0.47349 0.92842 1.29913 1.34308 1.37382 1.47274 1.59368 1.78602 2.01008 2.30963 2.43847 2.59464 3.03765 3.09413 3.39507 3.50375 3.57218 3.75188 3.92399 3.95968 4.04190 4.10223 4.14237 4.21300 4.27884 4.38871 4.51954 4.59949 4.65507 4.77456 4.89613 4.92746 4.93951 5.04532 5.06571 5.17581 5.23706 5.31578 5.48152 5.69712 5.73642 5.75138 5.79081 5.89082 6.00759 6.23217 6.56373 6.68430 7.00214 7.16476 7.32556 8.81518 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.003808 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.236682 B = 7351.378272 C = 8789.117358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.193 4.193 3 C 0.129 3.871 4 N -0.592 5.592 5 C 0.265 3.735 6 C -0.544 4.544 7 H 0.054 0.946 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.968 3.032 11 H -0.281 1.281 12 H -0.272 1.272 13 H -0.261 1.261 14 C 0.486 3.514 15 O -0.587 6.587 16 C 0.106 3.894 17 N -0.567 5.567 18 C 0.704 3.296 19 O -0.576 6.576 20 N -0.694 5.694 21 C 0.165 3.835 22 C -0.152 4.152 23 C -0.176 4.176 24 C -0.164 4.164 25 C -0.142 4.142 26 C 0.527 3.473 27 O -0.486 6.486 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.026 0.974 34 H -0.006 1.006 35 H 0.268 0.732 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.452 0.548 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.047 0.953 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.141 10.174 10.750 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.212 4.212 3 C 0.008 3.992 4 N -0.322 5.322 5 C 0.144 3.856 6 C -0.583 4.583 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.792 3.208 11 H -0.207 1.207 12 H -0.197 1.197 13 H -0.185 1.185 14 C 0.273 3.727 15 O -0.467 6.467 16 C -0.019 4.019 17 N -0.312 5.312 18 C 0.405 3.595 19 O -0.452 6.452 20 N -0.359 5.359 21 C 0.075 3.925 22 C -0.210 4.210 23 C -0.195 4.195 24 C -0.201 4.201 25 C -0.179 4.179 26 C 0.315 3.685 27 O -0.356 6.356 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.044 0.956 34 H 0.012 0.988 35 H 0.077 0.923 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.299 0.701 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.066 0.934 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.134 0.866 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -20.480 9.933 10.667 25.137 hybrid contribution 1.255 -0.317 -0.340 1.338 sum -19.225 9.615 10.327 23.848 Atomic orbital electron populations 1.24104 0.94442 1.03759 0.97321 1.23241 0.97049 0.98113 1.02790 1.20939 0.91939 0.96709 0.89653 1.48178 1.13791 1.59871 1.10383 1.18745 0.77720 0.94035 0.95129 1.21682 0.94322 0.96080 1.46167 0.92807 1.25866 0.99465 0.98481 0.95242 1.70059 1.14653 1.22259 1.49730 0.85413 0.78277 0.78881 0.78248 1.20732 1.19701 1.18483 1.21296 0.90247 0.78351 0.82848 1.90641 1.56928 1.57886 1.41272 1.21659 0.94642 1.03902 0.81698 1.46023 1.61142 1.12876 1.11127 1.15943 0.77513 0.84249 0.81835 1.90971 1.56001 1.14188 1.84015 1.45453 1.70178 1.10081 1.10157 1.20856 0.97545 0.83840 0.90247 1.22182 0.93813 1.03203 1.01794 1.22127 0.98813 0.98680 0.99924 1.23288 1.02810 0.91941 1.02052 1.23155 1.02646 1.01167 0.90935 1.21406 0.74762 0.81221 0.91118 1.90763 1.42351 1.39694 1.62834 0.86902 0.85971 0.88872 0.87538 0.89366 0.95558 0.98805 0.92335 0.83788 0.83999 0.70055 0.89099 0.86483 0.93430 0.87094 0.87330 0.87186 0.86575 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 13.86 67.77 0.94 -2.33 16 2 C -0.19 -5.43 9.74 25.64 0.25 -5.18 16 3 C 0.13 4.17 5.65 85.63 0.48 4.65 16 4 N -0.59 -26.51 2.44 -830.51 -2.03 -28.53 16 5 C 0.26 14.88 5.16 85.64 0.44 15.32 16 6 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16 7 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 8 C 0.01 0.51 5.46 84.66 0.46 0.97 16 9 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 10 Si 0.97 46.04 29.54 68.60 2.03 48.07 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 14 C 0.49 21.95 7.74 87.66 0.68 22.63 16 15 O -0.59 -32.53 16.01 -3.05 -0.05 -32.58 16 16 C 0.11 3.45 4.73 85.63 0.41 3.85 16 17 N -0.57 -18.35 2.09 -777.23 -1.63 -19.98 16 18 C 0.70 22.01 8.62 179.44 1.55 23.56 16 19 O -0.58 -21.65 17.48 -3.81 -0.07 -21.72 16 20 N -0.69 -14.73 5.91 -439.83 -2.60 -17.33 16 21 C 0.17 3.41 1.20 2.98 0.00 3.42 16 22 C -0.15 -2.83 7.66 71.98 0.55 -2.27 16 23 C -0.18 -2.45 5.41 -10.79 -0.06 -2.51 16 24 C -0.16 -1.67 9.73 30.62 0.30 -1.37 16 25 C -0.14 -1.04 9.88 30.62 0.30 -0.73 16 26 C 0.53 16.05 6.98 87.94 0.61 16.67 16 27 O -0.49 -17.27 17.76 -2.88 -0.05 -17.32 16 28 H 0.11 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.12 1.87 7.84 -2.91 -0.02 1.85 16 30 H 0.09 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.11 2.59 6.09 -2.38 -0.01 2.58 16 32 H 0.09 2.96 8.07 -2.38 -0.02 2.94 16 33 H 0.03 1.49 8.07 -2.38 -0.02 1.48 16 34 H -0.01 -0.40 7.42 -2.39 -0.02 -0.42 16 35 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 36 H 0.14 3.85 7.27 -2.39 -0.02 3.83 16 37 H 0.14 3.97 7.25 -2.38 -0.02 3.95 16 38 H 0.45 6.60 8.96 -92.71 -0.83 5.77 16 39 H 0.09 1.64 6.86 -2.39 -0.02 1.63 16 40 H 0.12 1.23 6.86 -2.39 -0.02 1.22 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.11 1.09 6.04 -2.39 -0.01 1.08 16 44 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 46 H 0.11 0.54 7.16 -2.38 -0.02 0.53 16 Total: -1.00 -87.02 389.74 3.23 -83.79 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.18 Total: 18.13 kcal Atomic # 6 Polarization: 37.42 SS G_CDS: 7.16 Total: 44.57 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -5.97 Total: -122.94 kcal Atomic # 8 Polarization: -71.45 SS G_CDS: -0.17 Total: -71.62 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -87.02 3.23 -83.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292468930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.343 kcal (2) G-P(sol) polarization free energy of solvation -87.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds