Wall clock time and date at job start Tue Mar 31 2020 20:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08998 * 109.47533 * 159.97844 * 7 6 5 9 9 C 1.53005 * 109.47221 * 279.98023 * 7 6 5 10 10 O 1.42900 * 109.47132 * 55.00039 * 9 7 6 11 11 N 1.46506 * 109.47359 * 39.97685 * 7 6 5 12 12 C 1.34770 * 120.00151 * 154.99928 * 11 7 6 13 13 O 1.21585 * 120.00138 * 0.02562 * 12 11 7 14 14 N 1.34779 * 120.00004 * 180.02562 * 12 11 7 15 15 C 1.46497 * 120.00034 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47266 * 180.02562 * 15 14 12 17 17 O 1.21286 * 119.99670 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00093 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00080 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99788 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00056 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00341 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99855 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47423 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47137 * 120.00499 * 23 21 19 26 26 H 1.48506 * 109.47224 * 240.00275 * 23 21 19 27 27 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 28 28 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 36 36 H 1.08994 * 109.47186 * 174.99811 * 9 7 6 37 37 H 1.09004 * 109.46702 * 294.99855 * 9 7 6 38 38 H 0.96702 * 114.00057 * 180.02562 * 10 9 7 39 39 H 0.97007 * 119.99690 * 334.99998 * 11 7 6 40 40 H 0.96995 * 119.99665 * 0.02562 * 14 12 11 41 41 H 1.09000 * 109.47394 * 300.00374 * 15 14 12 42 42 H 1.09001 * 109.47280 * 60.00276 * 15 14 12 43 43 H 0.97004 * 119.99958 * 0.02562 * 18 16 15 44 44 H 0.96996 * 120.00189 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.00166 * 179.97438 * 27 6 5 46 46 H 1.07996 * 120.00605 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.2442 5.9084 0.9654 9 6 4.9649 5.4569 -0.2496 10 8 5.2518 4.7515 -1.4588 11 7 2.7813 6.2042 -1.0588 12 6 2.6600 7.5427 -0.9587 13 8 3.1104 8.1232 0.0100 14 7 2.0394 8.2377 -1.9325 15 6 1.9070 9.6926 -1.8235 16 6 1.1798 10.2229 -3.0322 17 8 0.8082 9.4604 -3.8991 18 7 0.9414 11.5443 -3.1493 19 6 0.2803 12.0267 -4.2491 20 1 -0.0499 11.3479 -5.0216 21 6 0.0340 13.3889 -4.3696 22 7 0.4353 14.2149 -3.4296 23 14 -0.8674 14.0461 -5.8679 24 1 -1.2094 12.9199 -6.7734 25 1 -2.1126 14.7302 -5.4358 26 1 0.0037 15.0109 -6.5860 27 6 2.7234 3.3758 1.1971 28 6 2.2627 2.0725 1.1971 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0926 1.5598 -2.1325 35 1 2.9045 3.8845 -2.1325 36 1 5.3129 6.4860 -0.3380 37 1 5.4736 4.9717 0.5836 38 1 6.1925 4.7163 -1.6799 39 1 2.4223 5.7410 -1.8319 40 1 1.6798 7.7745 -2.7051 41 1 1.3438 9.9398 -0.9236 42 1 2.8974 10.1445 -1.7678 43 1 1.2383 12.1540 -2.4557 44 1 0.2638 15.1658 -3.5139 45 1 2.9031 3.8851 2.1324 46 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358270995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:40 Heat of formation + Delta-G solvation = -101.049591 kcal Electronic energy + Delta-G solvation = -27863.273008 eV Core-core repulsion = 23752.437435 eV Total energy + Delta-G solvation = -4110.835573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.41131 -39.43177 -38.23695 -37.19588 -35.21174 -34.39117 -33.70018 -33.59296 -31.37584 -31.16903 -30.49618 -28.23969 -27.13661 -24.61646 -24.29243 -23.03702 -22.28772 -20.81406 -20.23394 -19.55184 -18.59079 -18.02728 -17.50859 -16.91862 -15.93655 -15.65053 -15.59268 -15.46015 -15.18945 -14.84037 -14.58566 -14.38361 -14.12654 -13.98701 -13.89603 -13.71724 -13.53507 -13.47221 -13.28989 -12.73082 -12.61457 -12.16417 -11.99140 -11.86204 -11.68934 -11.62064 -11.51052 -11.13504 -11.05417 -11.02694 -10.40008 -10.31962 -10.24713 -9.98727 -9.63420 -9.18826 -9.07349 -8.75126 -8.60883 -8.58269 -8.08508 -6.50152 -3.92048 1.08923 1.24508 2.81781 3.11143 3.23299 3.30191 3.37992 3.57302 3.76839 4.09683 4.11487 4.35886 4.46626 4.53854 4.58533 4.83486 4.85272 4.91836 5.03298 5.04837 5.18603 5.21093 5.22591 5.28217 5.31819 5.47882 5.52279 5.57141 5.65139 5.79088 5.87964 5.90843 5.93535 6.02370 6.09976 6.21836 6.33063 6.41645 6.58224 6.77265 6.80522 7.12978 7.44348 7.47535 7.94153 8.25160 8.46819 8.80150 9.06242 9.41165 9.89117 10.66851 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.001987 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.263339 B =14090.809274 C =14932.040460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.119 4.119 5 C -0.083 4.083 6 C -0.091 4.091 7 C 0.211 3.789 8 H 0.108 0.892 9 C 0.067 3.933 10 O -0.565 6.565 11 N -0.736 5.736 12 C 0.706 3.294 13 O -0.601 6.601 14 N -0.723 5.723 15 C 0.129 3.871 16 C 0.429 3.571 17 O -0.597 6.597 18 N -0.550 5.550 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.106 4.106 28 C -0.120 4.120 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.376 0.624 39 H 0.398 0.602 40 H 0.407 0.593 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.396 0.604 44 H 0.273 0.727 45 H 0.123 0.877 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.932 -24.870 9.303 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.137 4.137 5 C -0.102 4.102 6 C -0.092 4.092 7 C 0.105 3.895 8 H 0.126 0.874 9 C -0.012 4.012 10 O -0.370 6.370 11 N -0.392 5.392 12 C 0.406 3.594 13 O -0.481 6.481 14 N -0.380 5.380 15 C 0.000 4.000 16 C 0.215 3.785 17 O -0.484 6.484 18 N -0.185 5.185 19 C -0.433 4.433 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.125 4.125 28 C -0.138 4.138 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.223 0.777 39 H 0.234 0.766 40 H 0.244 0.756 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.230 0.770 44 H 0.083 0.917 45 H 0.141 0.859 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.398 -24.640 9.610 27.210 hybrid contribution 0.098 0.566 -0.940 1.102 sum 6.496 -24.073 8.669 26.398 Atomic orbital electron populations 1.21752 0.94666 1.01658 1.02401 1.20546 0.96244 0.92733 1.02713 1.19908 0.98856 0.96204 0.93276 1.21013 1.00298 0.94937 0.97500 1.20916 0.97089 0.94365 0.97781 1.19748 1.00499 0.95150 0.93787 1.19678 0.89657 0.87853 0.92340 0.87436 1.22621 0.95455 0.96166 0.86942 1.86476 1.30020 1.77941 1.42554 1.45071 1.63351 1.05497 1.25329 1.15841 0.79109 0.81331 0.83099 1.90890 1.55321 1.69072 1.32781 1.44759 1.61455 1.07650 1.24168 1.20781 1.01265 0.79633 0.98275 1.19776 0.86261 0.83737 0.88753 1.90492 1.57661 1.56722 1.43492 1.41795 1.49780 1.05380 1.21549 1.19776 1.32321 0.91858 0.99347 0.87644 1.25326 0.97776 0.95851 0.98855 1.69624 1.46142 1.04267 1.33477 0.85757 0.78775 0.78872 0.80677 1.19153 1.20632 1.20642 1.20967 0.99259 0.94964 0.97292 1.20932 1.00626 0.94781 0.97492 0.92463 0.92529 0.92426 0.91169 0.91097 0.86164 0.85706 0.92380 0.92962 0.77713 0.76634 0.75573 0.90011 0.90034 0.77023 0.91668 0.85928 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.09 -0.55 6.07 -27.88 -0.17 -0.72 16 3 C -0.08 -0.71 5.13 -104.62 -0.54 -1.24 16 4 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 5 C -0.08 -0.84 8.05 -39.58 -0.32 -1.16 16 6 C -0.09 -0.94 4.83 -104.62 -0.51 -1.45 16 7 C 0.21 2.38 2.61 -69.08 -0.18 2.20 16 8 H 0.11 1.29 7.44 -51.93 -0.39 0.90 16 9 C 0.07 0.68 6.84 37.16 0.25 0.94 16 10 O -0.56 -5.39 12.04 -35.23 -0.42 -5.82 16 11 N -0.74 -9.51 4.98 -59.81 -0.30 -9.81 16 12 C 0.71 11.65 8.53 -86.92 -0.74 10.91 16 13 O -0.60 -11.54 16.01 5.29 0.08 -11.45 16 14 N -0.72 -12.47 5.53 -66.42 -0.37 -12.84 16 15 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 16 C 0.43 9.95 7.85 -10.98 -0.09 9.86 16 17 O -0.60 -15.43 15.24 5.55 0.08 -15.34 16 18 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 19 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 20 H 0.11 3.01 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 22 N -0.89 -24.00 13.05 55.50 0.72 -23.28 16 23 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 C -0.11 -0.99 9.67 -39.58 -0.38 -1.37 16 28 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.25 6.67 -52.49 -0.35 0.90 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.38 2.16 9.12 45.56 0.42 2.57 16 39 H 0.40 4.64 6.88 -40.82 -0.28 4.36 16 40 H 0.41 6.91 7.45 -40.82 -0.30 6.60 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.40 9.51 7.90 -40.82 -0.32 9.19 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -32.93 391.46 -8.52 -41.45 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -5.81 Total: 20.35 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -3.34 Total: 9.02 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.00 Total: -59.73 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.25 Total: -32.61 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.93 -8.52 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358270995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.596 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds