Wall clock time and date at job start Tue Mar 31 2020 19:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34082 * 126.69075 * 2 1 4 4 N 1.20921 * 111.75493 * 179.76613 * 3 2 1 5 5 C 1.30747 * 111.46511 * 0.44866 * 4 3 2 6 6 N 1.39366 * 126.89516 * 179.83076 * 5 4 3 7 7 C 1.34775 * 119.99846 * 359.68680 * 6 5 4 8 8 O 1.21353 * 120.00432 * 0.02562 * 7 6 5 9 9 C 1.49380 * 119.99660 * 179.97438 * 7 6 5 10 10 O 1.21360 * 120.00223 * 353.23444 * 9 7 6 11 11 N 1.34777 * 119.99992 * 173.23193 * 9 7 6 12 12 C 1.46918 * 120.63363 * 171.34890 * 11 9 7 13 13 C 1.53184 * 108.89798 * 126.33780 * 12 11 9 14 14 C 1.53358 * 109.15012 * 54.57765 * 13 12 11 15 15 C 1.52990 * 109.42374 * 178.67502 * 14 13 12 16 16 C 1.50710 * 109.47125 * 295.12941 * 15 14 13 17 17 H 1.08002 * 119.99500 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99859 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00490 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47478 * 89.99769 * 20 18 16 22 22 H 1.48507 * 109.47163 * 209.99716 * 20 18 16 23 23 H 1.48500 * 109.46946 * 329.99567 * 20 18 16 24 24 C 1.53038 * 109.60470 * 298.71552 * 14 13 12 25 25 C 1.46932 * 120.62551 * 351.36479 * 11 9 7 26 26 C 1.35247 * 126.69275 * 180.02562 * 2 1 3 27 27 C 1.50701 * 128.02070 * 359.96344 * 26 2 1 28 28 H 1.08996 * 109.47135 * 269.95081 * 1 2 3 29 29 H 1.09002 * 109.47297 * 29.95519 * 1 2 3 30 30 H 1.09009 * 109.47289 * 149.95503 * 1 2 3 31 31 H 0.96993 * 119.99453 * 179.68616 * 6 5 4 32 32 H 1.09000 * 109.58524 * 246.20027 * 12 11 9 33 33 H 1.09004 * 109.58767 * 6.47983 * 12 11 9 34 34 H 1.09003 * 109.50304 * 174.65389 * 13 12 11 35 35 H 1.09002 * 109.50213 * 294.75689 * 13 12 11 36 36 H 1.09007 * 109.41957 * 58.74935 * 14 13 12 37 37 H 1.09006 * 109.47248 * 55.12450 * 15 14 13 38 38 H 1.08993 * 109.47566 * 175.12758 * 15 14 13 39 39 H 0.96993 * 120.00393 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.49727 * 301.41790 * 24 14 13 41 41 H 1.09004 * 109.52472 * 181.33523 * 24 14 13 42 42 H 1.08995 * 109.59177 * 353.37662 * 25 11 9 43 43 H 1.09002 * 109.58174 * 113.66213 * 25 11 9 44 44 H 1.08999 * 109.46881 * 270.00451 * 27 26 2 45 45 H 1.09007 * 109.47031 * 30.00250 * 27 26 2 46 46 H 1.08995 * 109.46925 * 149.99860 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3081 1.0752 0.0000 4 7 3.4765 0.7635 0.0046 5 6 3.6252 -0.5355 -0.0013 6 7 4.8277 -1.2399 -0.0018 7 6 5.9991 -0.5735 -0.0023 8 8 6.0069 0.6400 -0.0017 9 6 7.2880 -1.3286 -0.0023 10 8 7.2840 -2.5359 0.1219 11 7 8.4553 -0.6693 -0.1402 12 6 9.7352 -1.3662 0.0458 13 6 10.6070 -1.1419 -1.1936 14 6 10.7395 0.3644 -1.4496 15 6 11.6364 0.5966 -2.6671 16 6 13.0320 0.1164 -2.3619 17 1 13.2567 -0.3112 -1.3959 18 6 14.0217 0.2230 -3.3158 19 7 13.7479 0.7433 -4.4923 20 14 15.7513 -0.3728 -2.9377 21 1 15.8782 -1.8011 -3.3234 22 1 16.7323 0.4361 -3.7050 23 1 16.0184 -0.2268 -1.4843 24 6 9.3564 0.9640 -1.7134 25 6 8.4720 0.7603 -0.4793 26 6 2.3151 -1.0845 -0.0005 27 6 1.9178 -2.5382 -0.0004 28 1 -0.3633 -0.0009 1.0276 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8896 -0.5146 31 1 4.8214 -2.2099 -0.0019 32 1 10.2423 -0.9703 0.9257 33 1 9.5547 -2.4331 0.1773 34 1 11.5938 -1.5741 -1.0276 35 1 10.1415 -1.6175 -2.0569 36 1 11.1821 0.8429 -0.5759 37 1 11.2409 0.0452 -3.5202 38 1 11.6616 1.6606 -2.9022 39 1 14.4443 0.8186 -5.1632 40 1 8.9028 0.4686 -2.5718 41 1 9.4546 2.0301 -1.9185 42 1 7.4581 1.0962 -0.6968 43 1 8.8737 1.3298 0.3588 44 1 1.8225 -2.8887 1.0273 45 1 0.9632 -2.6540 -0.5138 46 1 2.6802 -3.1232 -0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592294418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:10 Heat of formation + Delta-G solvation = -1.560976 kcal Electronic energy + Delta-G solvation = -28766.970583 eV Core-core repulsion = 24660.449160 eV Total energy + Delta-G solvation = -4106.521423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.21163 -41.16474 -39.08067 -37.58384 -36.41509 -34.77156 -33.97336 -32.35306 -32.11269 -30.81413 -29.66516 -28.35750 -27.44819 -25.97286 -24.37601 -23.05122 -22.42323 -22.05082 -20.94858 -19.88393 -19.25443 -18.20877 -18.04235 -17.28328 -16.91097 -16.24398 -16.20566 -16.07695 -15.33839 -14.59528 -14.51027 -14.42162 -14.25087 -13.96829 -13.87547 -13.76985 -13.50787 -13.28504 -13.01898 -12.87598 -12.83206 -12.59012 -12.36557 -11.98432 -11.93833 -11.44218 -11.29370 -11.19432 -11.00256 -10.76570 -10.70565 -10.45242 -10.24785 -9.67705 -9.53006 -9.51575 -9.25917 -9.12932 -8.88839 -8.51813 -8.34996 -5.99647 -4.01727 0.95131 1.15907 1.85747 2.03717 2.79266 3.04300 3.14124 3.31372 3.38108 3.40668 3.80604 4.02525 4.31216 4.40132 4.45554 4.72740 4.89571 4.98647 5.03388 5.11508 5.20638 5.32044 5.34708 5.35959 5.37675 5.45382 5.51678 5.60703 5.68965 5.78760 5.88258 5.98416 6.19180 6.26595 6.35888 6.47757 6.52789 6.59979 6.92745 6.98443 7.10388 7.21718 7.40449 7.66837 7.78676 7.81171 7.99841 8.07977 8.42164 9.04642 9.62074 11.11560 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029317 B = 0.002115 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.845303 B =13233.838302 C =13692.649461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.021 4.021 3 O 0.103 5.897 4 N -0.343 5.343 5 C 0.242 3.758 6 N -0.609 5.609 7 C 0.504 3.496 8 O -0.458 6.458 9 C 0.510 3.490 10 O -0.529 6.529 11 N -0.564 5.564 12 C 0.104 3.896 13 C -0.117 4.117 14 C -0.084 4.084 15 C 0.028 3.972 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.129 4.129 25 C 0.069 3.931 26 C -0.215 4.215 27 C -0.076 4.076 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.433 0.567 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.117 -5.250 10.608 30.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 O 0.040 5.960 4 N -0.056 5.056 5 C -0.008 4.008 6 N -0.264 5.264 7 C 0.286 3.714 8 O -0.328 6.328 9 C 0.292 3.708 10 O -0.407 6.407 11 N -0.296 5.296 12 C -0.017 4.017 13 C -0.155 4.155 14 C -0.102 4.102 15 C -0.009 4.009 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.167 4.167 25 C -0.052 4.052 26 C -0.221 4.221 27 C -0.133 4.133 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.273 0.727 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.145 0.855 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.090 -3.906 10.513 29.320 hybrid contribution 0.945 -1.447 0.035 1.729 sum -26.145 -5.353 10.548 28.697 Atomic orbital electron populations 1.20359 0.83734 1.04774 1.04206 1.24082 0.96313 0.85686 1.02350 1.84930 1.10783 1.32137 1.68168 1.74471 0.96054 1.12773 1.22280 1.20311 0.86961 0.89372 1.04195 1.42339 1.01333 1.11168 1.71562 1.20712 0.85129 0.88063 0.77530 1.90651 1.85569 1.13143 1.43422 1.19490 0.84482 0.87141 0.79735 1.90749 1.86777 1.13027 1.50183 1.48090 1.04971 1.12114 1.64405 1.22020 0.81959 0.97925 0.99749 1.21960 0.99613 0.98294 0.95621 1.21296 0.93909 0.93658 1.01365 1.19122 0.93239 0.97011 0.91564 1.21237 0.94488 1.40238 0.99486 0.92582 1.25029 0.98874 0.95457 0.95174 1.69962 1.33384 1.45161 1.04954 0.86633 0.84589 0.78690 0.78313 1.20735 1.21308 1.19914 1.22043 0.96532 1.01734 0.96406 1.22926 1.05190 0.78629 0.98492 1.20661 0.89648 0.98415 1.13383 1.20123 1.02304 0.88020 1.02881 0.89220 0.89563 0.89000 0.72721 0.90926 0.89268 0.89347 0.92162 0.92205 0.96644 0.96519 0.93052 0.92196 0.90729 0.85528 0.91127 0.90612 0.90495 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.29 36.00 0.37 0.15 16 2 C -0.02 -0.16 7.48 -35.37 -0.26 -0.42 16 3 O 0.10 1.15 11.19 17.06 0.19 1.35 16 4 N -0.34 -4.79 10.38 31.18 0.32 -4.46 16 5 C 0.24 2.88 7.90 -154.93 -1.22 1.65 16 6 N -0.61 -7.12 5.41 -11.86 -0.06 -7.18 16 7 C 0.50 7.19 7.70 -11.62 -0.09 7.10 16 8 O -0.46 -7.48 11.95 5.49 0.07 -7.42 16 9 C 0.51 7.69 7.73 -11.62 -0.09 7.60 16 10 O -0.53 -8.44 15.93 5.49 0.09 -8.36 16 11 N -0.56 -8.73 2.97 -173.31 -0.52 -9.24 16 12 C 0.10 1.61 6.43 -3.72 -0.02 1.58 16 13 C -0.12 -2.12 5.21 -26.45 -0.14 -2.26 16 14 C -0.08 -1.65 2.10 -90.42 -0.19 -1.84 16 15 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 16 C -0.52 -14.15 8.39 -34.44 -0.29 -14.44 16 17 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 20 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.13 -2.23 5.36 -26.61 -0.14 -2.37 16 25 C 0.07 1.06 5.98 -3.71 -0.02 1.03 16 26 C -0.22 -1.78 6.34 -104.23 -0.66 -2.44 16 27 C -0.08 -0.36 10.30 36.01 0.37 0.01 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.12 7.43 -51.92 -0.39 -0.27 16 31 H 0.43 3.97 8.25 -40.82 -0.34 3.64 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 34 H 0.09 1.68 6.93 -51.93 -0.36 1.32 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.13 2.00 4.32 -54.77 -0.24 1.76 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.22 7.43 -51.93 -0.39 -0.17 16 46 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -34.10 377.47 -7.77 -41.87 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.64 Total: -0.07 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.61 Total: -2.59 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.48 Total: -46.97 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.34 Total: -14.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.10 -7.77 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592294418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.306 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds