Wall clock time and date at job start Tue Mar 31 2020 19:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34082 * 126.69075 * 2 1 4 4 N 1.20921 * 111.75493 * 179.76613 * 3 2 1 5 5 C 1.30747 * 111.46511 * 0.44866 * 4 3 2 6 6 N 1.39366 * 126.89516 * 179.83076 * 5 4 3 7 7 C 1.34775 * 119.99846 * 359.68680 * 6 5 4 8 8 O 1.21353 * 120.00432 * 0.02562 * 7 6 5 9 9 C 1.49380 * 119.99660 * 179.97438 * 7 6 5 10 10 O 1.21360 * 120.00223 * 353.23444 * 9 7 6 11 11 N 1.34777 * 119.99992 * 173.23193 * 9 7 6 12 12 C 1.46918 * 120.63363 * 171.34890 * 11 9 7 13 13 C 1.53184 * 108.89798 * 126.33780 * 12 11 9 14 14 C 1.53358 * 109.15012 * 54.57765 * 13 12 11 15 15 C 1.52990 * 109.42374 * 178.67502 * 14 13 12 16 16 C 1.50710 * 109.47125 * 295.12941 * 15 14 13 17 17 H 1.08002 * 119.99500 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99859 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00490 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47478 * 89.99769 * 20 18 16 22 22 H 1.48507 * 109.47163 * 209.99716 * 20 18 16 23 23 H 1.48500 * 109.46946 * 329.99567 * 20 18 16 24 24 C 1.53038 * 109.60470 * 298.71552 * 14 13 12 25 25 C 1.46932 * 120.62551 * 351.36479 * 11 9 7 26 26 C 1.35247 * 126.69275 * 180.02562 * 2 1 3 27 27 C 1.50701 * 128.02070 * 359.96344 * 26 2 1 28 28 H 1.08996 * 109.47135 * 269.95081 * 1 2 3 29 29 H 1.09002 * 109.47297 * 29.95519 * 1 2 3 30 30 H 1.09009 * 109.47289 * 149.95503 * 1 2 3 31 31 H 0.96993 * 119.99453 * 179.68616 * 6 5 4 32 32 H 1.09000 * 109.58524 * 246.20027 * 12 11 9 33 33 H 1.09004 * 109.58767 * 6.47983 * 12 11 9 34 34 H 1.09003 * 109.50304 * 174.65389 * 13 12 11 35 35 H 1.09002 * 109.50213 * 294.75689 * 13 12 11 36 36 H 1.09007 * 109.41957 * 58.74935 * 14 13 12 37 37 H 1.09006 * 109.47248 * 55.12450 * 15 14 13 38 38 H 1.08993 * 109.47566 * 175.12758 * 15 14 13 39 39 H 0.96993 * 120.00393 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.49727 * 301.41790 * 24 14 13 41 41 H 1.09004 * 109.52472 * 181.33523 * 24 14 13 42 42 H 1.08995 * 109.59177 * 353.37662 * 25 11 9 43 43 H 1.09002 * 109.58174 * 113.66213 * 25 11 9 44 44 H 1.08999 * 109.46881 * 270.00451 * 27 26 2 45 45 H 1.09007 * 109.47031 * 30.00250 * 27 26 2 46 46 H 1.08995 * 109.46925 * 149.99860 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3081 1.0752 0.0000 4 7 3.4765 0.7635 0.0046 5 6 3.6252 -0.5355 -0.0013 6 7 4.8277 -1.2399 -0.0018 7 6 5.9991 -0.5735 -0.0023 8 8 6.0069 0.6400 -0.0017 9 6 7.2880 -1.3286 -0.0023 10 8 7.2840 -2.5359 0.1219 11 7 8.4553 -0.6693 -0.1402 12 6 9.7352 -1.3662 0.0458 13 6 10.6070 -1.1419 -1.1936 14 6 10.7395 0.3644 -1.4496 15 6 11.6364 0.5966 -2.6671 16 6 13.0320 0.1164 -2.3619 17 1 13.2567 -0.3112 -1.3959 18 6 14.0217 0.2230 -3.3158 19 7 13.7479 0.7433 -4.4923 20 14 15.7513 -0.3728 -2.9377 21 1 15.8782 -1.8011 -3.3234 22 1 16.7323 0.4361 -3.7050 23 1 16.0184 -0.2268 -1.4843 24 6 9.3564 0.9640 -1.7134 25 6 8.4720 0.7603 -0.4793 26 6 2.3151 -1.0845 -0.0005 27 6 1.9178 -2.5382 -0.0004 28 1 -0.3633 -0.0009 1.0276 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8896 -0.5146 31 1 4.8214 -2.2099 -0.0019 32 1 10.2423 -0.9703 0.9257 33 1 9.5547 -2.4331 0.1773 34 1 11.5938 -1.5741 -1.0276 35 1 10.1415 -1.6175 -2.0569 36 1 11.1821 0.8429 -0.5759 37 1 11.2409 0.0452 -3.5202 38 1 11.6616 1.6606 -2.9022 39 1 14.4443 0.8186 -5.1632 40 1 8.9028 0.4686 -2.5718 41 1 9.4546 2.0301 -1.9185 42 1 7.4581 1.0962 -0.6968 43 1 8.8737 1.3298 0.3588 44 1 1.8225 -2.8887 1.0273 45 1 0.9632 -2.6540 -0.5138 46 1 2.6802 -3.1232 -0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592294418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:09 Heat of formation + Delta-G solvation = -22.884668 kcal Electronic energy + Delta-G solvation = -28767.895248 eV Core-core repulsion = 24660.449160 eV Total energy + Delta-G solvation = -4107.446088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.00728 -42.32680 -40.27899 -38.94222 -37.38259 -35.81464 -35.26948 -34.01683 -33.15572 -32.16755 -30.15902 -30.04757 -28.05045 -27.26935 -25.98139 -24.34186 -23.64621 -23.13115 -22.26684 -20.99658 -20.53895 -19.29883 -18.86000 -18.45171 -18.24867 -17.92673 -17.33277 -17.07701 -16.55824 -16.40896 -15.71835 -15.51048 -15.30418 -14.91457 -14.87362 -14.55091 -14.39083 -14.34364 -14.27788 -14.01512 -13.79726 -13.58811 -13.11569 -13.07766 -13.04790 -12.86870 -12.76877 -12.64276 -12.53785 -12.33736 -12.17361 -12.06436 -11.84260 -11.39226 -11.14946 -11.05837 -10.54322 -10.41627 -10.10385 -10.03891 -9.86332 -8.17330 -6.26979 -0.14009 0.51372 0.81660 1.15991 1.40662 1.41334 1.52133 1.92197 2.03534 2.28237 2.41851 2.82438 3.16137 3.20146 3.67308 3.82172 3.86995 3.98527 4.01483 4.11154 4.15919 4.33902 4.47283 4.56896 4.59291 4.71479 4.73491 4.77153 4.81872 4.84752 4.86374 4.98569 5.00307 5.09134 5.12714 5.16510 5.27615 5.33788 5.39256 5.42132 5.54342 5.63016 5.77113 5.87529 6.00557 6.27626 6.33533 6.60233 6.89495 7.33128 7.41643 8.94556 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029317 B = 0.002115 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.845303 B =13233.838302 C =13692.649461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.015 4.015 3 O 0.091 5.909 4 N -0.389 5.389 5 C 0.217 3.783 6 N -0.596 5.596 7 C 0.505 3.495 8 O -0.483 6.483 9 C 0.514 3.486 10 O -0.537 6.537 11 N -0.569 5.569 12 C 0.114 3.886 13 C -0.110 4.110 14 C -0.076 4.076 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.937 5.937 20 Si 0.962 3.038 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.261 1.261 24 C -0.123 4.123 25 C 0.081 3.919 26 C -0.215 4.215 27 C -0.076 4.076 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.443 0.557 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.065 0.935 37 H -0.015 1.015 38 H -0.012 1.012 39 H 0.261 0.739 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.739 -6.731 12.348 32.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 O 0.028 5.972 4 N -0.103 5.103 5 C -0.032 4.032 6 N -0.251 5.251 7 C 0.287 3.713 8 O -0.355 6.355 9 C 0.296 3.704 10 O -0.415 6.415 11 N -0.301 5.301 12 C -0.007 4.007 13 C -0.148 4.148 14 C -0.094 4.094 15 C -0.004 4.004 16 C -0.565 4.565 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.578 5.578 20 Si 0.787 3.213 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.185 1.185 24 C -0.161 4.161 25 C -0.040 4.040 26 C -0.221 4.221 27 C -0.133 4.133 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.286 0.714 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.003 0.997 38 H 0.007 0.993 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.145 0.855 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.120 0.880 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -28.749 -5.422 12.271 31.725 hybrid contribution 1.308 -0.989 -0.544 1.727 sum -27.441 -6.411 11.727 30.523 Atomic orbital electron populations 1.20649 0.80157 1.06371 1.05775 1.24991 0.98032 0.84443 1.00342 1.84863 1.10499 1.33498 1.68341 1.74448 0.97602 1.14235 1.24015 1.20743 0.87942 0.89530 1.04953 1.42184 1.00856 1.11620 1.70416 1.20525 0.85484 0.87706 0.77595 1.90637 1.85868 1.13986 1.44993 1.19591 0.84653 0.86983 0.79155 1.90740 1.86959 1.13344 1.50495 1.48118 1.05231 1.12096 1.64677 1.21929 0.81527 0.98605 0.98682 1.21820 0.99796 0.96555 0.96643 1.21142 0.94147 0.95329 0.98801 1.19012 0.93941 0.94532 0.92941 1.21667 0.95385 1.39636 0.99825 0.91513 1.25983 1.03538 0.95692 0.94985 1.70110 1.34826 1.46695 1.06122 0.85494 0.78995 0.78164 0.78681 1.20002 1.21255 1.18486 1.21944 0.95391 1.01516 0.97223 1.22804 1.04615 0.78878 0.97728 1.21109 0.87822 1.00349 1.12826 1.20288 1.03511 0.85454 1.04047 0.87440 0.88707 0.86609 0.71447 0.88935 0.88505 0.90194 0.93661 0.91632 0.99701 0.99325 0.93040 0.93329 0.90540 0.85499 0.89760 0.89411 0.88033 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.29 71.24 0.73 0.53 16 2 C -0.01 -0.20 7.48 25.00 0.19 -0.01 16 3 O 0.09 2.01 11.19 71.23 0.80 2.81 16 4 N -0.39 -10.99 10.38 -56.34 -0.59 -11.57 16 5 C 0.22 5.09 7.90 134.15 1.06 6.15 16 6 N -0.60 -13.62 5.41 -310.82 -1.68 -15.30 16 7 C 0.51 14.28 7.70 87.25 0.67 14.95 16 8 O -0.48 -15.88 11.95 -3.26 -0.04 -15.92 16 9 C 0.51 15.06 7.73 87.25 0.67 15.73 16 10 O -0.54 -16.45 15.93 -3.28 -0.05 -16.50 16 11 N -0.57 -17.06 2.97 -820.57 -2.44 -19.50 16 12 C 0.11 3.32 6.43 86.36 0.56 3.88 16 13 C -0.11 -3.97 5.21 30.78 0.16 -3.81 16 14 C -0.08 -3.02 2.10 -10.66 -0.02 -3.04 16 15 C 0.03 1.72 4.45 29.85 0.13 1.85 16 16 C -0.53 -29.27 8.39 25.60 0.21 -29.05 16 17 H 0.07 3.49 7.06 -2.91 -0.02 3.47 16 18 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 19 N -0.94 -57.58 13.29 21.45 0.28 -57.30 16 20 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 24 C -0.12 -4.29 5.36 30.67 0.16 -4.13 16 25 C 0.08 2.43 5.98 86.36 0.52 2.95 16 26 C -0.22 -3.20 6.34 -19.61 -0.12 -3.32 16 27 C -0.08 -0.50 10.30 71.24 0.73 0.24 16 28 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.12 -0.19 7.43 -2.38 -0.02 -0.20 16 31 H 0.44 7.72 8.25 -92.71 -0.76 6.96 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.10 2.73 7.01 -2.38 -0.02 2.72 16 34 H 0.08 3.01 6.93 -2.39 -0.02 2.99 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 37 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 42 H 0.13 3.99 4.32 -47.35 -0.20 3.79 16 43 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.09 0.39 8.14 -2.39 -0.02 0.38 16 45 H 0.10 0.17 7.43 -2.38 -0.02 0.16 16 46 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 Total: -1.00 -76.03 377.47 4.49 -71.55 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.06 Total: 12.33 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.12 Total: 3.09 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -4.42 Total: -103.67 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: 0.71 Total: -29.61 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -76.03 4.49 -71.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592294418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.661 kcal (2) G-P(sol) polarization free energy of solvation -76.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds