Wall clock time and date at job start Tue Mar 31 2020 20:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47161 * 2 1 4 4 N 1.31929 * 120.17188 * 264.00115 * 3 2 1 5 5 N 1.28282 * 122.32635 * 179.97438 * 4 3 2 6 6 C 1.31913 * 122.53239 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.01300 * 179.97438 * 6 5 4 8 8 C 1.38507 * 119.97059 * 359.71263 * 6 5 4 9 9 C 1.39771 * 120.17850 * 83.98084 * 3 2 1 10 10 C 1.48033 * 121.14874 * 0.02562 * 9 3 2 11 11 O 1.21434 * 119.99960 * 354.49547 * 10 9 3 12 12 O 1.34674 * 119.99945 * 174.49778 * 10 9 3 13 13 C 1.45197 * 116.99828 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47381 * 329.99931 * 13 12 10 15 15 C 1.53007 * 109.46838 * 90.00156 * 13 12 10 16 16 C 1.50699 * 109.46892 * 209.99493 * 13 12 10 17 17 O 1.21275 * 120.00487 * 355.00619 * 16 13 12 18 18 N 1.34776 * 119.99827 * 174.99745 * 16 13 12 19 19 C 1.46503 * 120.00060 * 0.02562 * 18 16 13 20 20 C 1.46497 * 120.00348 * 180.02562 * 18 16 13 21 21 C 1.50697 * 109.46888 * 90.00083 * 20 18 16 22 22 H 1.08000 * 120.00681 * 0.02562 * 21 20 18 23 23 C 1.37882 * 119.99845 * 180.02562 * 21 20 18 24 24 N 1.31515 * 120.00061 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00122 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47027 * 89.99818 * 25 23 21 27 27 H 1.48504 * 109.47200 * 209.99687 * 25 23 21 28 28 H 1.48502 * 109.47142 * 329.99577 * 25 23 21 29 29 H 1.09004 * 109.46958 * 300.00432 * 1 2 3 30 30 H 1.08999 * 109.46859 * 60.00347 * 1 2 3 31 31 H 1.08998 * 109.46923 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47041 * 239.99332 * 2 1 3 33 33 H 1.08999 * 109.46859 * 119.99653 * 2 1 3 34 34 H 1.08997 * 109.47469 * 89.99693 * 7 6 5 35 35 H 1.09003 * 109.47105 * 209.99776 * 7 6 5 36 36 H 1.08997 * 109.47216 * 329.99849 * 7 6 5 37 37 H 1.07997 * 121.09059 * 180.28773 * 8 6 5 38 38 H 1.08997 * 109.47319 * 59.99736 * 15 13 12 39 39 H 1.08998 * 109.46983 * 179.97438 * 15 13 12 40 40 H 1.09004 * 109.46744 * 299.99529 * 15 13 12 41 41 H 1.09000 * 109.47780 * 89.99468 * 19 18 16 42 42 H 1.09001 * 109.47022 * 209.99539 * 19 18 16 43 43 H 1.09001 * 109.47111 * 329.98865 * 19 18 16 44 44 H 1.08996 * 109.47823 * 210.00443 * 20 18 16 45 45 H 1.09005 * 109.46900 * 330.00960 * 20 18 16 46 46 H 0.96995 * 120.00373 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3658 2.0062 -1.1343 5 7 2.7974 3.2132 -1.1823 6 6 2.9407 3.9588 -0.1036 7 6 3.4535 5.3706 -0.2257 8 6 2.6146 3.4453 1.1408 9 6 2.1471 2.1254 1.2016 10 6 1.7825 1.5010 2.4933 11 8 1.2821 0.3947 2.5131 12 8 2.0057 2.1598 3.6465 13 6 1.6227 1.4870 4.8748 14 1 0.7742 0.8310 4.6804 15 6 2.8006 0.6579 5.3908 16 6 1.2383 2.5122 5.9103 17 8 1.3686 3.6940 5.6712 18 7 0.7494 2.1157 7.1020 19 6 0.5922 0.6881 7.3910 20 6 0.3751 3.1123 8.1085 21 6 -1.0717 3.4922 7.9254 22 1 -1.6543 3.0365 7.1384 23 6 -1.6517 4.4215 8.7627 24 7 -2.9144 4.7527 8.6033 25 14 -0.6440 5.2101 10.1235 26 1 0.0024 6.4442 9.6091 27 1 -1.5332 5.5548 11.2618 28 1 0.4000 4.2584 10.5814 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.6136 6.0517 -0.3626 35 1 3.9956 5.6399 0.6808 36 1 4.1222 5.4413 -1.0835 37 1 2.7205 4.0412 2.0352 38 1 3.6491 1.3139 5.5852 39 1 2.5133 0.1532 6.3132 40 1 3.0787 -0.0836 4.6418 41 1 1.5068 0.3063 7.8446 42 1 -0.2412 0.5463 8.0791 43 1 0.3939 0.1495 6.4644 44 1 0.5176 2.6939 9.1048 45 1 1.0005 3.9976 7.9932 46 1 -3.3224 5.4067 9.1920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759715761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:59 Heat of formation + Delta-G solvation = -54.709404 kcal Electronic energy + Delta-G solvation = -29267.233552 eV Core-core repulsion = 25158.407440 eV Total energy + Delta-G solvation = -4108.826112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.79311 -40.61247 -39.16384 -36.93730 -35.22648 -35.13038 -34.11320 -32.93252 -32.15150 -31.49062 -28.44916 -28.30713 -26.45223 -25.95487 -25.04869 -24.25245 -22.65379 -22.02427 -21.12676 -19.08583 -18.43895 -17.88770 -17.05116 -16.90080 -16.53841 -16.29975 -16.00515 -15.54174 -15.44983 -14.87332 -14.48106 -14.26647 -14.15294 -13.80985 -13.64984 -13.50354 -13.45132 -13.12199 -12.70686 -12.57245 -12.53502 -12.42996 -12.38438 -12.03898 -12.00393 -11.69888 -11.52502 -11.41891 -11.16129 -11.04117 -10.86140 -10.80714 -10.60911 -10.60370 -10.23590 -9.95351 -9.82024 -9.63684 -9.16157 -8.66923 -7.90843 -6.16371 -4.16547 -0.12571 0.49800 2.04496 2.12519 3.03600 3.16195 3.23104 3.28898 3.30729 3.53753 3.57029 3.88282 4.00459 4.27816 4.32084 4.47568 4.61020 4.66487 4.77580 4.88369 4.92100 5.05247 5.14764 5.16385 5.23097 5.25095 5.32734 5.38136 5.46014 5.47146 5.59151 5.62863 5.66934 5.76111 5.81909 5.85213 5.93594 6.05512 6.07099 6.23179 6.54532 6.79707 7.11746 7.36525 7.50166 7.98483 8.31344 8.36044 8.69013 8.86390 9.42524 10.96827 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014482 B = 0.002904 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.937427 B = 9638.714534 C =10396.579416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 C 0.124 3.876 4 N -0.240 5.240 5 N -0.218 5.218 6 C 0.055 3.945 7 C -0.101 4.101 8 C -0.050 4.050 9 C -0.118 4.118 10 C 0.513 3.487 11 O -0.483 6.483 12 O -0.318 6.318 13 C 0.072 3.928 14 H 0.111 0.889 15 C -0.171 4.171 16 C 0.511 3.489 17 O -0.519 6.519 18 N -0.590 5.590 19 C 0.075 3.925 20 C 0.217 3.783 21 C -0.534 4.534 22 H 0.075 0.925 23 C 0.074 3.926 24 N -0.895 5.895 25 Si 0.877 3.123 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.265 1.265 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.171 0.829 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.035 0.965 45 H 0.039 0.961 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.511 -8.900 -13.184 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 C -0.020 4.020 4 N -0.082 5.082 5 N -0.061 5.061 6 C -0.089 4.089 7 C -0.159 4.159 8 C -0.079 4.079 9 C -0.130 4.130 10 C 0.356 3.644 11 O -0.371 6.371 12 O -0.233 6.233 13 C 0.014 3.986 14 H 0.129 0.871 15 C -0.228 4.228 16 C 0.296 3.704 17 O -0.394 6.394 18 N -0.323 5.323 19 C -0.069 4.069 20 C 0.097 3.903 21 C -0.573 4.573 22 H 0.093 0.907 23 C -0.129 4.129 24 N -0.533 5.533 25 Si 0.704 3.296 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.190 1.190 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.188 0.812 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.414 -8.591 -14.807 21.749 hybrid contribution 0.027 0.503 2.391 2.443 sum 13.442 -8.089 -12.416 20.007 Atomic orbital electron populations 1.21622 0.93082 1.02753 1.02039 1.20752 0.97497 0.88500 1.04915 1.23161 0.91892 0.98683 0.88244 1.73134 1.08609 1.03258 1.23158 1.72793 1.06812 0.99398 1.27136 1.22965 0.96991 0.99202 0.89741 1.20727 1.02176 0.88615 1.04413 1.22889 0.90566 0.93959 1.00488 1.20169 1.04534 0.95894 0.92386 1.20721 0.75688 0.83658 0.84370 1.90797 1.39562 1.19308 1.87401 1.86616 1.75277 1.47527 1.13890 1.22695 1.00164 0.94092 0.81620 0.87094 1.22307 0.97572 0.99963 1.03003 1.19717 0.79035 0.88948 0.82736 1.90704 1.53478 1.17464 1.77744 1.47733 1.61951 1.07552 1.15038 1.21897 1.01815 0.81434 1.01750 1.19734 0.97047 0.87597 0.85873 1.21302 0.93874 1.24744 1.17350 0.90729 1.24859 0.94855 0.95863 0.97355 1.69890 1.11722 1.32870 1.38799 0.86843 0.80349 0.80585 0.81861 1.19826 1.20969 1.19019 0.92072 0.92835 0.91326 0.89732 0.87480 0.89372 0.89679 0.89666 0.81151 0.90873 0.89013 0.91052 0.92907 0.89951 0.91976 0.94757 0.94336 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.51 37.16 0.35 -1.07 16 2 C -0.08 -0.82 5.48 -27.88 -0.15 -0.97 16 3 C 0.12 1.53 6.16 -81.98 -0.51 1.02 16 4 N -0.24 -3.18 11.42 33.82 0.39 -2.80 16 5 N -0.22 -2.78 11.41 33.57 0.38 -2.40 16 6 C 0.06 0.59 6.86 -82.46 -0.57 0.02 16 7 C -0.10 -0.72 10.19 36.00 0.37 -0.35 16 8 C -0.05 -0.55 9.46 -38.76 -0.37 -0.92 16 9 C -0.12 -1.47 5.92 -104.59 -0.62 -2.09 16 10 C 0.51 6.96 7.84 34.75 0.27 7.23 16 11 O -0.48 -6.61 11.30 -19.21 -0.22 -6.82 16 12 O -0.32 -4.80 8.84 -47.08 -0.42 -5.22 16 13 C 0.07 1.07 2.17 -27.88 -0.06 1.01 16 14 H 0.11 1.57 6.15 -51.93 -0.32 1.25 16 15 C -0.17 -1.89 9.28 37.16 0.34 -1.55 16 16 C 0.51 10.02 7.10 -10.99 -0.08 9.94 16 17 O -0.52 -12.37 16.09 -14.05 -0.23 -12.60 16 18 N -0.59 -11.43 2.86 -182.96 -0.52 -11.95 16 19 C 0.07 1.04 8.92 59.85 0.53 1.57 16 20 C 0.22 5.08 4.23 -5.20 -0.02 5.06 16 21 C -0.53 -14.94 9.94 -34.44 -0.34 -15.28 16 22 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 23 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 24 N -0.89 -27.09 13.96 55.43 0.77 -26.32 16 25 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 26 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 28 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 29 H 0.06 0.74 6.92 -51.93 -0.36 0.38 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.11 1.14 5.90 -51.93 -0.31 0.83 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.17 1.71 7.78 -52.49 -0.41 1.30 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.87 5.12 -51.93 -0.27 0.61 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.57 7.02 -51.93 -0.36 0.21 16 42 H 0.08 1.19 8.07 -51.93 -0.42 0.78 16 43 H 0.06 0.73 6.07 -51.93 -0.32 0.41 16 44 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 45 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -34.85 381.07 -6.16 -41.01 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.45 Total: -0.51 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.94 Total: 5.63 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 1.02 Total: -43.47 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.86 Total: -24.64 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.85 -6.16 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759715761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.702 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds