Wall clock time and date at job start Tue Mar 31 2020 20:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47161 * 2 1 4 4 N 1.31929 * 120.17188 * 264.00115 * 3 2 1 5 5 N 1.28282 * 122.32635 * 179.97438 * 4 3 2 6 6 C 1.31913 * 122.53239 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.01300 * 179.97438 * 6 5 4 8 8 C 1.38507 * 119.97059 * 359.71263 * 6 5 4 9 9 C 1.39771 * 120.17850 * 83.98084 * 3 2 1 10 10 C 1.48033 * 121.14874 * 0.02562 * 9 3 2 11 11 O 1.21434 * 119.99960 * 354.49547 * 10 9 3 12 12 O 1.34674 * 119.99945 * 174.49778 * 10 9 3 13 13 C 1.45197 * 116.99828 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47381 * 329.99931 * 13 12 10 15 15 C 1.53007 * 109.46838 * 90.00156 * 13 12 10 16 16 C 1.50699 * 109.46892 * 209.99493 * 13 12 10 17 17 O 1.21275 * 120.00487 * 355.00619 * 16 13 12 18 18 N 1.34776 * 119.99827 * 174.99745 * 16 13 12 19 19 C 1.46503 * 120.00060 * 0.02562 * 18 16 13 20 20 C 1.46497 * 120.00348 * 180.02562 * 18 16 13 21 21 C 1.50697 * 109.46888 * 90.00083 * 20 18 16 22 22 H 1.08000 * 120.00681 * 0.02562 * 21 20 18 23 23 C 1.37882 * 119.99845 * 180.02562 * 21 20 18 24 24 N 1.31515 * 120.00061 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00122 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47027 * 89.99818 * 25 23 21 27 27 H 1.48504 * 109.47200 * 209.99687 * 25 23 21 28 28 H 1.48502 * 109.47142 * 329.99577 * 25 23 21 29 29 H 1.09004 * 109.46958 * 300.00432 * 1 2 3 30 30 H 1.08999 * 109.46859 * 60.00347 * 1 2 3 31 31 H 1.08998 * 109.46923 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47041 * 239.99332 * 2 1 3 33 33 H 1.08999 * 109.46859 * 119.99653 * 2 1 3 34 34 H 1.08997 * 109.47469 * 89.99693 * 7 6 5 35 35 H 1.09003 * 109.47105 * 209.99776 * 7 6 5 36 36 H 1.08997 * 109.47216 * 329.99849 * 7 6 5 37 37 H 1.07997 * 121.09059 * 180.28773 * 8 6 5 38 38 H 1.08997 * 109.47319 * 59.99736 * 15 13 12 39 39 H 1.08998 * 109.46983 * 179.97438 * 15 13 12 40 40 H 1.09004 * 109.46744 * 299.99529 * 15 13 12 41 41 H 1.09000 * 109.47780 * 89.99468 * 19 18 16 42 42 H 1.09001 * 109.47022 * 209.99539 * 19 18 16 43 43 H 1.09001 * 109.47111 * 329.98865 * 19 18 16 44 44 H 1.08996 * 109.47823 * 210.00443 * 20 18 16 45 45 H 1.09005 * 109.46900 * 330.00960 * 20 18 16 46 46 H 0.96995 * 120.00373 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3658 2.0062 -1.1343 5 7 2.7974 3.2132 -1.1823 6 6 2.9407 3.9588 -0.1036 7 6 3.4535 5.3706 -0.2257 8 6 2.6146 3.4453 1.1408 9 6 2.1471 2.1254 1.2016 10 6 1.7825 1.5010 2.4933 11 8 1.2821 0.3947 2.5131 12 8 2.0057 2.1598 3.6465 13 6 1.6227 1.4870 4.8748 14 1 0.7742 0.8310 4.6804 15 6 2.8006 0.6579 5.3908 16 6 1.2383 2.5122 5.9103 17 8 1.3686 3.6940 5.6712 18 7 0.7494 2.1157 7.1020 19 6 0.5922 0.6881 7.3910 20 6 0.3751 3.1123 8.1085 21 6 -1.0717 3.4922 7.9254 22 1 -1.6543 3.0365 7.1384 23 6 -1.6517 4.4215 8.7627 24 7 -2.9144 4.7527 8.6033 25 14 -0.6440 5.2101 10.1235 26 1 0.0024 6.4442 9.6091 27 1 -1.5332 5.5548 11.2618 28 1 0.4000 4.2584 10.5814 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.6136 6.0517 -0.3626 35 1 3.9956 5.6399 0.6808 36 1 4.1222 5.4413 -1.0835 37 1 2.7205 4.0412 2.0352 38 1 3.6491 1.3139 5.5852 39 1 2.5133 0.1532 6.3132 40 1 3.0787 -0.0836 4.6418 41 1 1.5068 0.3063 7.8446 42 1 -0.2412 0.5463 8.0791 43 1 0.3939 0.1495 6.4644 44 1 0.5176 2.6939 9.1048 45 1 1.0005 3.9976 7.9932 46 1 -3.3224 5.4067 9.1920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759715761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:58 Heat of formation + Delta-G solvation = -77.255598 kcal Electronic energy + Delta-G solvation = -29268.211228 eV Core-core repulsion = 25158.407440 eV Total energy + Delta-G solvation = -4109.803788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.75372 -41.74124 -40.56950 -38.06221 -36.77389 -36.07616 -35.07802 -34.81399 -33.31764 -32.53644 -30.18492 -29.11262 -27.73221 -26.92328 -26.05418 -25.51806 -24.07210 -23.06186 -22.25166 -20.50304 -19.47477 -19.15651 -18.95283 -18.06319 -17.64612 -17.52969 -17.01644 -16.96175 -16.58268 -16.35764 -15.73758 -15.36345 -15.20830 -14.95403 -14.77365 -14.61909 -14.39523 -14.27838 -14.11933 -13.76180 -13.68759 -13.45800 -13.34648 -13.25652 -13.10911 -12.86619 -12.84337 -12.64912 -12.43631 -12.37167 -12.11956 -12.01190 -11.87433 -11.76122 -11.74462 -11.54826 -10.89218 -10.84293 -10.69885 -10.68165 -9.51580 -8.35156 -6.41614 -1.08138 -0.38202 0.92816 1.09765 1.34192 1.38141 1.46461 1.55017 2.20445 2.24339 2.30770 2.70054 2.97376 2.99428 3.09722 3.31355 3.34048 3.58191 3.70766 3.79926 3.87291 4.10844 4.21347 4.30104 4.32271 4.42612 4.50703 4.60192 4.61478 4.64422 4.71108 4.77969 4.80619 4.85249 4.90661 4.90807 4.95190 5.03346 5.10224 5.19210 5.20880 5.32281 5.42280 5.49920 6.18345 6.28211 6.51065 6.60366 7.12363 7.26219 7.39600 8.81785 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014482 B = 0.002904 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.937427 B = 9638.714534 C =10396.579416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C 0.120 3.880 4 N -0.258 5.258 5 N -0.238 5.238 6 C 0.060 3.940 7 C -0.101 4.101 8 C -0.048 4.048 9 C -0.131 4.131 10 C 0.515 3.485 11 O -0.485 6.485 12 O -0.333 6.333 13 C 0.080 3.920 14 H 0.118 0.882 15 C -0.163 4.163 16 C 0.502 3.498 17 O -0.574 6.574 18 N -0.596 5.596 19 C 0.065 3.935 20 C 0.224 3.776 21 C -0.542 4.542 22 H 0.026 0.974 23 C 0.010 3.990 24 N -0.946 5.946 25 Si 0.949 3.051 26 H -0.276 1.276 27 H -0.277 1.277 28 H -0.232 1.232 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.180 0.820 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.024 0.976 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.748 -10.074 -12.362 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 C -0.024 4.024 4 N -0.099 5.099 5 N -0.081 5.081 6 C -0.085 4.085 7 C -0.159 4.159 8 C -0.077 4.077 9 C -0.143 4.143 10 C 0.358 3.642 11 O -0.373 6.373 12 O -0.248 6.248 13 C 0.022 3.978 14 H 0.136 0.864 15 C -0.219 4.219 16 C 0.288 3.712 17 O -0.453 6.453 18 N -0.328 5.328 19 C -0.076 4.076 20 C 0.103 3.897 21 C -0.580 4.580 22 H 0.045 0.955 23 C -0.188 4.188 24 N -0.586 5.586 25 Si 0.772 3.228 26 H -0.201 1.201 27 H -0.202 1.202 28 H -0.155 1.155 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.197 0.803 38 H 0.091 0.909 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.042 0.958 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.664 -9.841 -14.000 23.199 hybrid contribution -0.745 0.864 2.045 2.342 sum 14.919 -8.977 -11.955 21.121 Atomic orbital electron populations 1.21594 0.93119 1.03523 1.00896 1.20789 0.97324 0.87669 1.05586 1.23374 0.91782 0.99374 0.87897 1.73082 1.09356 1.03802 1.23670 1.72742 1.07580 0.99587 1.28178 1.23451 0.95854 1.00310 0.88902 1.20883 1.02759 0.86425 1.05787 1.23090 0.89871 0.93609 1.01149 1.20222 1.05447 0.96623 0.91970 1.20827 0.75503 0.83630 0.84198 1.90786 1.39692 1.19412 1.87386 1.86605 1.75488 1.48355 1.14364 1.22663 1.02228 0.92400 0.80497 0.86405 1.22330 0.95676 0.99646 1.04297 1.20578 0.77968 0.89261 0.83352 1.90664 1.55778 1.19996 1.78858 1.47804 1.61276 1.09199 1.14477 1.22266 1.03708 0.78413 1.03235 1.19430 0.93490 0.88622 0.88195 1.21564 0.96039 1.24537 1.15875 0.95526 1.25889 0.96005 0.96431 1.00438 1.70053 1.13969 1.34035 1.40507 0.85694 0.79261 0.79705 0.78168 1.20140 1.20229 1.15499 0.94125 0.92970 0.89607 0.88272 0.87484 0.88417 0.87868 0.88758 0.80277 0.90929 0.86950 0.89186 0.88669 0.90788 0.89667 0.92171 0.95833 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.51 71.98 0.68 -2.01 16 2 C -0.08 -1.51 5.48 29.85 0.16 -1.34 16 3 C 0.12 2.91 6.16 42.91 0.26 3.17 16 4 N -0.26 -6.77 11.42 -46.92 -0.54 -7.31 16 5 N -0.24 -5.96 11.41 -47.70 -0.54 -6.51 16 6 C 0.06 1.22 6.86 42.61 0.29 1.51 16 7 C -0.10 -1.26 10.19 71.23 0.73 -0.54 16 8 C -0.05 -1.04 9.46 22.80 0.22 -0.83 16 9 C -0.13 -3.21 5.92 -19.84 -0.12 -3.33 16 10 C 0.52 13.67 7.84 70.42 0.55 14.22 16 11 O -0.48 -12.77 11.30 20.05 0.23 -12.54 16 12 O -0.33 -9.86 8.84 -49.46 -0.44 -10.30 16 13 C 0.08 2.26 2.17 29.85 0.06 2.33 16 14 H 0.12 3.15 6.15 -2.39 -0.01 3.14 16 15 C -0.16 -3.09 9.28 71.98 0.67 -2.42 16 16 C 0.50 19.52 7.10 87.66 0.62 20.15 16 17 O -0.57 -28.00 16.09 15.73 0.25 -27.74 16 18 N -0.60 -22.49 2.86 -851.14 -2.43 -24.92 16 19 C 0.07 1.64 8.92 127.77 1.14 2.78 16 20 C 0.22 10.33 4.23 85.63 0.36 10.69 16 21 C -0.54 -31.06 9.94 25.60 0.25 -30.80 16 22 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 23 C 0.01 0.61 5.47 84.66 0.46 1.07 16 24 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 25 Si 0.95 42.85 27.47 68.60 1.88 44.74 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 27 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.23 -9.15 6.54 99.48 0.65 -8.50 16 29 H 0.04 0.98 6.92 -2.39 -0.02 0.96 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 2.15 5.90 -2.39 -0.01 2.13 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.10 0.94 8.09 -2.39 -0.02 0.92 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.18 3.52 7.78 -2.91 -0.02 3.50 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.11 1.64 5.12 -2.39 -0.01 1.63 16 40 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.10 1.63 7.02 -2.39 -0.02 1.61 16 42 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 43 H 0.08 1.74 6.07 -2.39 -0.01 1.73 16 44 H 0.06 2.47 7.13 -2.39 -0.02 2.45 16 45 H 0.02 1.16 6.85 -2.38 -0.02 1.15 16 46 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -79.74 381.07 6.02 -73.72 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.95 Total: 14.94 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.36 Total: 14.65 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -3.21 Total: -97.47 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: 0.04 Total: -50.58 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.74 kcal Total: -79.74 6.02 -73.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759715761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.538 kcal (2) G-P(sol) polarization free energy of solvation -79.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds