Wall clock time and date at job start Tue Mar 31 2020 20:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47058 * 2 1 4 4 C 1.38548 * 120.01224 * 125.24173 * 3 2 1 5 5 C 1.40118 * 117.81364 * 180.26345 * 4 3 2 6 6 C 1.48034 * 121.15363 * 179.78429 * 5 4 3 7 7 O 1.21427 * 120.00239 * 173.92416 * 6 5 4 8 8 O 1.34670 * 119.99801 * 353.92271 * 6 5 4 9 9 C 1.45204 * 117.00013 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46838 * 329.99778 * 9 8 6 11 11 C 1.52999 * 109.47053 * 89.99852 * 9 8 6 12 12 C 1.50701 * 109.46910 * 209.99842 * 9 8 6 13 13 O 1.21277 * 120.00466 * 354.99577 * 12 9 8 14 14 N 1.34781 * 119.99780 * 174.99927 * 12 9 8 15 15 C 1.46503 * 119.99776 * 0.02562 * 14 12 9 16 16 C 1.46496 * 119.99831 * 179.97438 * 14 12 9 17 17 C 1.50698 * 109.47205 * 90.00183 * 16 14 12 18 18 H 1.08007 * 119.99641 * 359.97438 * 17 16 14 19 19 C 1.37878 * 120.00444 * 179.97438 * 17 16 14 20 20 N 1.31511 * 119.99644 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00327 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47120 * 60.00180 * 21 19 17 23 23 H 1.48493 * 109.47279 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46984 * 300.00189 * 21 19 17 25 25 C 1.39809 * 117.69630 * 359.51075 * 5 4 3 26 26 C 1.50697 * 120.17456 * 180.27297 * 25 5 4 27 27 N 1.31898 * 119.64641 * 0.25188 * 25 5 4 28 28 N 1.28272 * 122.33789 * 359.97438 * 27 25 5 29 29 H 1.08998 * 109.47755 * 59.99611 * 1 2 3 30 30 H 1.09002 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47052 * 299.99218 * 1 2 3 32 32 H 1.09007 * 109.46723 * 240.00591 * 2 1 3 33 33 H 1.09000 * 109.47262 * 120.00263 * 2 1 3 34 34 H 1.08002 * 121.09641 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.47302 * 300.00359 * 11 9 8 36 36 H 1.08999 * 109.46849 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.47359 * 60.00245 * 11 9 8 38 38 H 1.08994 * 109.47036 * 90.00356 * 15 14 12 39 39 H 1.09000 * 109.46889 * 209.99675 * 15 14 12 40 40 H 1.09000 * 109.47368 * 329.99599 * 15 14 12 41 41 H 1.09008 * 109.47140 * 209.99966 * 16 14 12 42 42 H 1.08995 * 109.47720 * 329.99975 * 16 14 12 43 43 H 0.97003 * 120.00119 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.47094 * 83.67124 * 26 25 5 45 45 H 1.09007 * 109.47246 * 203.66617 * 26 25 5 46 46 H 1.09000 * 109.47429 * 323.66669 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9160 1.8434 0.9798 5 6 3.3490 3.1754 0.9392 6 6 4.2890 3.7062 1.9521 7 8 4.7368 4.8289 1.8356 8 8 4.6476 2.9441 3.0029 9 6 5.5733 3.5292 3.9563 10 1 6.2237 4.2376 3.4433 11 6 4.7877 4.2571 5.0490 12 6 6.4085 2.4401 4.5788 13 8 6.1798 1.2776 4.3199 14 7 7.4096 2.7581 5.4234 15 6 7.6854 4.1624 5.7366 16 6 8.2211 1.6994 6.0289 17 6 9.4023 1.4022 5.1416 18 1 9.5349 1.9471 4.2186 19 6 10.3136 0.4346 5.5079 20 7 10.1518 -0.2293 6.6316 21 14 11.7774 0.0656 4.4076 22 1 12.6000 1.2920 4.2504 23 1 12.6001 -1.0074 5.0215 24 1 11.2955 -0.3812 3.0760 25 6 2.8672 3.9841 -0.0944 26 6 3.3014 5.4237 -0.1950 27 7 2.0309 3.4802 -0.9813 28 7 1.6349 2.2610 -0.9357 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.2568 1.1695 1.7519 35 1 4.1836 5.0448 4.5988 36 1 5.4826 4.6959 5.7650 37 1 4.1373 3.5487 5.5621 38 1 7.1010 4.4622 6.6065 39 1 8.7468 4.2848 5.9524 40 1 7.4138 4.7850 4.8842 41 1 8.5745 2.0268 7.0068 42 1 7.6172 0.7993 6.1436 43 1 10.7931 -0.9099 6.8896 44 1 4.2590 5.4790 -0.7127 45 1 2.5546 5.9904 -0.7511 46 1 3.4046 5.8429 0.8058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759724772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:06 Heat of formation + Delta-G solvation = -61.092789 kcal Electronic energy + Delta-G solvation = -28950.682702 eV Core-core repulsion = 24841.579786 eV Total energy + Delta-G solvation = -4109.102916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.76686 -40.60141 -39.06036 -36.81743 -35.46990 -35.03550 -34.03617 -32.96236 -32.04648 -31.48527 -28.27715 -27.79432 -26.55466 -26.21235 -24.61620 -23.77564 -23.36693 -22.29370 -21.04183 -19.06174 -18.33891 -17.87248 -16.80560 -16.59827 -16.52971 -16.17102 -15.93235 -15.62365 -15.37772 -14.92103 -14.69806 -14.46297 -14.19282 -13.73040 -13.62841 -13.44041 -13.24536 -13.02589 -12.73034 -12.54763 -12.46921 -12.28571 -12.19083 -12.13578 -11.79921 -11.57327 -11.54592 -11.27216 -11.17282 -11.00635 -10.88620 -10.87028 -10.64221 -10.61029 -10.23736 -9.96506 -9.80435 -9.74576 -9.04338 -8.50987 -7.83460 -6.12411 -4.17809 -0.12271 0.49893 2.07597 2.13021 3.12095 3.16924 3.27309 3.31965 3.35351 3.53601 3.65443 3.87902 4.01599 4.28698 4.37936 4.47708 4.64010 4.70771 4.76910 4.83893 4.92847 4.93885 5.17416 5.22273 5.23250 5.29322 5.37851 5.39649 5.51521 5.52724 5.57164 5.60765 5.69252 5.74285 5.79915 5.84561 5.92118 5.98754 6.12751 6.20103 6.88037 7.29461 7.33458 7.40697 7.82938 8.12272 8.17935 8.31176 8.73886 8.89569 9.47528 10.95710 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002812 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.759617 B = 9955.286715 C =10811.524414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C 0.056 3.944 4 C -0.047 4.047 5 C -0.121 4.121 6 C 0.514 3.486 7 O -0.488 6.488 8 O -0.318 6.318 9 C 0.071 3.929 10 H 0.109 0.891 11 C -0.171 4.171 12 C 0.509 3.491 13 O -0.520 6.520 14 N -0.594 5.594 15 C 0.075 3.925 16 C 0.247 3.753 17 C -0.531 4.531 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 C 0.122 3.878 26 C -0.108 4.108 27 N -0.243 5.243 28 N -0.213 5.213 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.171 0.829 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.037 0.963 42 H 0.046 0.954 43 H 0.265 0.735 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.533 8.924 -8.254 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.088 4.088 4 C -0.076 4.076 5 C -0.133 4.133 6 C 0.357 3.643 7 O -0.376 6.376 8 O -0.232 6.232 9 C 0.013 3.987 10 H 0.127 0.873 11 C -0.228 4.228 12 C 0.293 3.707 13 O -0.395 6.395 14 N -0.327 5.327 15 C -0.069 4.069 16 C 0.129 3.871 17 C -0.570 4.570 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.022 4.022 26 C -0.166 4.166 27 N -0.085 5.085 28 N -0.056 5.056 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.189 0.811 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.109 0.891 45 H 0.098 0.902 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.305 8.735 -9.599 21.631 hybrid contribution 1.971 -0.347 0.781 2.148 sum -15.335 8.388 -8.818 19.577 Atomic orbital electron populations 1.21714 0.93552 1.02368 1.02781 1.20510 0.97387 0.88576 1.04410 1.22957 0.94793 0.98994 0.92056 1.22918 0.91926 0.94992 0.97763 1.20180 1.00431 0.95681 0.97019 1.20724 0.79516 0.83508 0.80580 1.90792 1.52063 1.19074 1.75701 1.86623 1.58469 1.45286 1.32856 1.22752 0.90892 0.95671 0.89402 0.87302 1.22299 1.01590 1.00716 0.98219 1.19700 0.81294 0.89025 0.80712 1.90705 1.69002 1.19776 1.60042 1.48078 1.31596 1.08182 1.44869 1.21866 1.02904 0.82469 0.99650 1.19365 0.89419 0.85334 0.93025 1.21373 1.07963 1.20726 1.06958 0.92477 1.24924 0.98226 0.95497 0.95308 1.69913 1.36777 1.24243 1.22286 0.86544 0.82015 0.78008 0.80798 1.20176 1.21073 1.20151 1.23147 0.91329 0.98699 0.89002 1.21014 1.02252 0.87824 1.05488 1.73147 1.09279 1.05524 1.20580 1.72708 1.16681 0.97410 1.18760 0.91444 0.91670 0.92719 0.89069 0.89236 0.81143 0.91183 0.88996 0.90832 0.93011 0.90170 0.92320 0.94520 0.93609 0.92533 0.89104 0.90159 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.78 37.16 0.36 -0.69 16 2 C -0.07 -0.55 6.35 -27.89 -0.18 -0.72 16 3 C 0.06 0.61 6.25 -82.46 -0.52 0.09 16 4 C -0.05 -0.53 9.41 -38.76 -0.36 -0.89 16 5 C -0.12 -1.51 5.92 -104.59 -0.62 -2.13 16 6 C 0.51 7.06 7.84 34.75 0.27 7.34 16 7 O -0.49 -6.83 12.78 -19.21 -0.25 -7.07 16 8 O -0.32 -4.90 8.84 -47.07 -0.42 -5.31 16 9 C 0.07 1.08 2.17 -27.88 -0.06 1.02 16 10 H 0.11 1.57 6.15 -51.93 -0.32 1.25 16 11 C -0.17 -2.00 9.27 37.16 0.34 -1.65 16 12 C 0.51 10.27 7.10 -10.98 -0.08 10.19 16 13 O -0.52 -12.78 16.09 -14.05 -0.23 -13.00 16 14 N -0.59 -11.96 2.86 -182.96 -0.52 -12.48 16 15 C 0.07 1.09 8.92 59.85 0.53 1.62 16 16 C 0.25 6.21 5.16 -5.20 -0.03 6.19 16 17 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 18 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 21 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.12 1.47 6.91 -81.98 -0.57 0.91 16 26 C -0.11 -1.07 8.98 36.00 0.32 -0.74 16 27 N -0.24 -3.17 11.42 33.82 0.39 -2.79 16 28 N -0.21 -2.67 11.04 33.58 0.37 -2.30 16 29 H 0.07 0.54 7.96 -51.93 -0.41 0.12 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.09 0.59 7.92 -51.93 -0.41 0.17 16 34 H 0.17 1.76 7.73 -52.49 -0.41 1.35 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.94 5.12 -51.93 -0.27 0.67 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.61 7.02 -51.93 -0.36 0.25 16 39 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.06 0.71 6.07 -51.93 -0.32 0.39 16 41 H 0.04 0.92 8.07 -51.92 -0.42 0.50 16 42 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 1.04 5.93 -51.93 -0.31 0.73 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -33.77 386.65 -6.63 -40.40 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.53 Total: -1.70 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.99 Total: 7.17 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.97 Total: -42.77 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.89 Total: -25.39 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.77 -6.63 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759724772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.690 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds