Wall clock time and date at job start Tue Mar 31 2020 20:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47058 * 2 1 4 4 C 1.38548 * 120.01224 * 125.24173 * 3 2 1 5 5 C 1.40118 * 117.81364 * 180.26345 * 4 3 2 6 6 C 1.48034 * 121.15363 * 179.78429 * 5 4 3 7 7 O 1.21427 * 120.00239 * 173.92416 * 6 5 4 8 8 O 1.34670 * 119.99801 * 353.92271 * 6 5 4 9 9 C 1.45204 * 117.00013 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46838 * 329.99778 * 9 8 6 11 11 C 1.52999 * 109.47053 * 89.99852 * 9 8 6 12 12 C 1.50701 * 109.46910 * 209.99842 * 9 8 6 13 13 O 1.21277 * 120.00466 * 354.99577 * 12 9 8 14 14 N 1.34781 * 119.99780 * 174.99927 * 12 9 8 15 15 C 1.46503 * 119.99776 * 0.02562 * 14 12 9 16 16 C 1.46496 * 119.99831 * 179.97438 * 14 12 9 17 17 C 1.50698 * 109.47205 * 90.00183 * 16 14 12 18 18 H 1.08007 * 119.99641 * 359.97438 * 17 16 14 19 19 C 1.37878 * 120.00444 * 179.97438 * 17 16 14 20 20 N 1.31511 * 119.99644 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00327 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47120 * 60.00180 * 21 19 17 23 23 H 1.48493 * 109.47279 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46984 * 300.00189 * 21 19 17 25 25 C 1.39809 * 117.69630 * 359.51075 * 5 4 3 26 26 C 1.50697 * 120.17456 * 180.27297 * 25 5 4 27 27 N 1.31898 * 119.64641 * 0.25188 * 25 5 4 28 28 N 1.28272 * 122.33789 * 359.97438 * 27 25 5 29 29 H 1.08998 * 109.47755 * 59.99611 * 1 2 3 30 30 H 1.09002 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47052 * 299.99218 * 1 2 3 32 32 H 1.09007 * 109.46723 * 240.00591 * 2 1 3 33 33 H 1.09000 * 109.47262 * 120.00263 * 2 1 3 34 34 H 1.08002 * 121.09641 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.47302 * 300.00359 * 11 9 8 36 36 H 1.08999 * 109.46849 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.47359 * 60.00245 * 11 9 8 38 38 H 1.08994 * 109.47036 * 90.00356 * 15 14 12 39 39 H 1.09000 * 109.46889 * 209.99675 * 15 14 12 40 40 H 1.09000 * 109.47368 * 329.99599 * 15 14 12 41 41 H 1.09008 * 109.47140 * 209.99966 * 16 14 12 42 42 H 1.08995 * 109.47720 * 329.99975 * 16 14 12 43 43 H 0.97003 * 120.00119 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.47094 * 83.67124 * 26 25 5 45 45 H 1.09007 * 109.47246 * 203.66617 * 26 25 5 46 46 H 1.09000 * 109.47429 * 323.66669 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9160 1.8434 0.9798 5 6 3.3490 3.1754 0.9392 6 6 4.2890 3.7062 1.9521 7 8 4.7368 4.8289 1.8356 8 8 4.6476 2.9441 3.0029 9 6 5.5733 3.5292 3.9563 10 1 6.2237 4.2376 3.4433 11 6 4.7877 4.2571 5.0490 12 6 6.4085 2.4401 4.5788 13 8 6.1798 1.2776 4.3199 14 7 7.4096 2.7581 5.4234 15 6 7.6854 4.1624 5.7366 16 6 8.2211 1.6994 6.0289 17 6 9.4023 1.4022 5.1416 18 1 9.5349 1.9471 4.2186 19 6 10.3136 0.4346 5.5079 20 7 10.1518 -0.2293 6.6316 21 14 11.7774 0.0656 4.4076 22 1 12.6000 1.2920 4.2504 23 1 12.6001 -1.0074 5.0215 24 1 11.2955 -0.3812 3.0760 25 6 2.8672 3.9841 -0.0944 26 6 3.3014 5.4237 -0.1950 27 7 2.0309 3.4802 -0.9813 28 7 1.6349 2.2610 -0.9357 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.2568 1.1695 1.7519 35 1 4.1836 5.0448 4.5988 36 1 5.4826 4.6959 5.7650 37 1 4.1373 3.5487 5.5621 38 1 7.1010 4.4622 6.6065 39 1 8.7468 4.2848 5.9524 40 1 7.4138 4.7850 4.8842 41 1 8.5745 2.0268 7.0068 42 1 7.6172 0.7993 6.1436 43 1 10.7931 -0.9099 6.8896 44 1 4.2590 5.4790 -0.7127 45 1 2.5546 5.9904 -0.7511 46 1 3.4046 5.8429 0.8058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759724772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:05 Heat of formation + Delta-G solvation = -81.462060 kcal Electronic energy + Delta-G solvation = -28951.565980 eV Core-core repulsion = 24841.579786 eV Total energy + Delta-G solvation = -4109.986194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.72669 -41.74599 -40.52786 -37.97748 -36.72456 -36.26367 -35.05722 -34.82514 -33.13554 -32.49670 -29.64094 -29.05246 -27.71351 -27.39141 -26.02013 -24.77880 -24.52176 -23.51918 -22.09469 -20.51037 -19.39242 -18.95036 -18.69305 -17.96807 -17.66203 -17.44403 -17.06938 -16.84966 -16.56127 -16.32823 -16.00215 -15.59789 -15.09623 -14.87541 -14.78140 -14.48471 -14.34834 -14.19776 -13.96001 -13.72109 -13.53758 -13.52682 -13.32841 -13.20911 -13.06827 -12.82639 -12.78409 -12.64440 -12.52807 -12.26444 -12.21419 -12.04310 -11.94051 -11.81138 -11.74450 -11.55474 -10.89640 -10.65939 -10.65797 -10.64361 -9.53270 -8.24948 -6.39393 -1.07900 -0.38013 0.94486 1.09064 1.36205 1.39677 1.46840 1.59664 2.21924 2.25024 2.39494 2.70344 2.95347 3.05360 3.11489 3.31274 3.36309 3.57952 3.70992 3.80000 3.87988 4.01695 4.31988 4.33032 4.37888 4.47073 4.51407 4.57575 4.60016 4.62925 4.67590 4.83457 4.87087 4.91275 4.96849 5.01990 5.04336 5.09856 5.14028 5.19532 5.27868 5.38803 5.49360 5.76252 6.02094 6.26837 6.58093 6.69269 7.18268 7.34285 7.39847 8.82100 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002812 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.759617 B = 9955.286715 C =10811.524414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C 0.060 3.940 4 C -0.045 4.045 5 C -0.133 4.133 6 C 0.517 3.483 7 O -0.490 6.490 8 O -0.333 6.333 9 C 0.081 3.919 10 H 0.123 0.877 11 C -0.164 4.164 12 C 0.500 3.500 13 O -0.577 6.577 14 N -0.598 5.598 15 C 0.067 3.933 16 C 0.260 3.740 17 C -0.547 4.547 18 H 0.052 0.948 19 C 0.012 3.988 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.260 1.260 23 H -0.277 1.277 24 H -0.279 1.279 25 C 0.120 3.880 26 C -0.104 4.104 27 N -0.261 5.261 28 N -0.229 5.229 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.178 0.822 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.033 0.967 42 H 0.003 0.997 43 H 0.268 0.732 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.590 10.377 -8.858 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.085 4.085 4 C -0.074 4.074 5 C -0.145 4.145 6 C 0.361 3.639 7 O -0.378 6.378 8 O -0.248 6.248 9 C 0.023 3.977 10 H 0.140 0.860 11 C -0.221 4.221 12 C 0.286 3.714 13 O -0.456 6.456 14 N -0.330 5.330 15 C -0.075 4.075 16 C 0.140 3.860 17 C -0.586 4.586 18 H 0.070 0.930 19 C -0.188 4.188 20 N -0.565 5.565 21 Si 0.788 3.212 22 H -0.185 1.185 23 H -0.202 1.202 24 H -0.205 1.205 25 C -0.025 4.025 26 C -0.162 4.162 27 N -0.103 5.103 28 N -0.071 5.071 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.195 0.805 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.051 0.949 42 H 0.021 0.979 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.370 10.258 -10.205 22.608 hybrid contribution 1.946 -0.818 0.983 2.329 sum -15.424 9.441 -9.222 20.300 Atomic orbital electron populations 1.21694 0.92961 1.03348 1.02079 1.20668 0.97831 0.86888 1.05584 1.23359 0.94096 0.99944 0.91143 1.23088 0.91646 0.94783 0.97915 1.20209 1.00807 0.96336 0.97133 1.20826 0.79515 0.83371 0.80193 1.90782 1.52285 1.19088 1.75662 1.86617 1.58533 1.46196 1.33470 1.22667 0.91200 0.93413 0.90394 0.85970 1.22326 1.01706 1.00699 0.97345 1.20584 0.81200 0.89578 0.79991 1.90667 1.70575 1.22478 1.61928 1.48042 1.30959 1.09513 1.44522 1.22219 1.03384 0.79431 1.02437 1.18842 0.88675 0.85545 0.92985 1.21664 1.08892 1.20991 1.07054 0.92964 1.25796 1.01102 0.95246 0.96657 1.70023 1.37877 1.24746 1.23822 0.85524 0.78714 0.78483 0.78452 1.18495 1.20246 1.20510 1.23416 0.90939 0.99536 0.88563 1.21047 1.02813 0.86680 1.05661 1.73109 1.09944 1.05993 1.21221 1.72660 1.17256 0.97614 1.19584 0.92453 0.89856 0.93091 0.88124 0.87771 0.80482 0.89005 0.87134 0.91306 0.89631 0.90759 0.89200 0.94864 0.97935 0.92284 0.88723 0.88707 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.78 71.98 0.70 -1.18 16 2 C -0.07 -1.02 6.35 29.85 0.19 -0.83 16 3 C 0.06 1.24 6.25 42.62 0.27 1.50 16 4 C -0.05 -0.99 9.41 22.80 0.21 -0.77 16 5 C -0.13 -3.21 5.92 -19.84 -0.12 -3.32 16 6 C 0.52 13.60 7.84 70.42 0.55 14.15 16 7 O -0.49 -12.76 12.78 20.07 0.26 -12.51 16 8 O -0.33 -9.98 8.84 -49.43 -0.44 -10.42 16 9 C 0.08 2.35 2.17 29.85 0.06 2.41 16 10 H 0.12 3.21 6.15 -2.39 -0.01 3.20 16 11 C -0.16 -3.37 9.27 71.98 0.67 -2.70 16 12 C 0.50 20.22 7.10 87.66 0.62 20.84 16 13 O -0.58 -29.37 16.09 15.73 0.25 -29.12 16 14 N -0.60 -23.98 2.86 -851.14 -2.43 -26.41 16 15 C 0.07 1.79 8.92 127.77 1.14 2.93 16 16 C 0.26 13.48 5.16 85.63 0.44 13.92 16 17 C -0.55 -30.77 9.39 25.60 0.24 -30.53 16 18 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 19 C 0.01 0.65 5.46 84.66 0.46 1.11 16 20 N -0.93 -54.62 13.29 21.45 0.28 -54.34 16 21 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 C 0.12 2.79 6.91 42.93 0.30 3.09 16 26 C -0.10 -1.91 8.98 71.24 0.64 -1.28 16 27 N -0.26 -6.67 11.42 -46.91 -0.54 -7.20 16 28 N -0.23 -5.64 11.04 -47.69 -0.53 -6.17 16 29 H 0.06 0.87 7.96 -2.39 -0.02 0.85 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.10 1.20 7.92 -2.39 -0.02 1.18 16 34 H 0.18 3.59 7.73 -2.91 -0.02 3.57 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.11 1.84 5.12 -2.39 -0.01 1.83 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.73 7.02 -2.39 -0.02 1.72 16 39 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 40 H 0.09 1.85 6.07 -2.39 -0.01 1.83 16 41 H 0.03 1.72 8.07 -2.38 -0.02 1.70 16 42 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 43 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.10 1.89 5.93 -2.39 -0.01 1.88 16 Total: -1.00 -75.39 386.65 6.28 -69.11 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 1.00 Total: 11.63 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 6.38 Total: 19.34 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -3.21 Total: -94.11 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: 0.07 Total: -52.05 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -75.39 6.28 -69.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759724772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.350 kcal (2) G-P(sol) polarization free energy of solvation -75.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds