Wall clock time and date at job start Tue Mar 31 2020 20:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47057 * 2 1 4 4 C 1.38230 * 120.00365 * 89.99644 * 3 2 1 5 5 C 1.38235 * 120.00326 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00196 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46818 * 25.00639 * 7 6 5 9 9 O 1.42899 * 109.46823 * 145.00426 * 7 6 5 10 10 C 1.52994 * 109.47165 * 265.00399 * 7 6 5 11 11 N 1.46505 * 109.47107 * 180.02562 * 10 7 6 12 12 C 1.34773 * 120.00199 * 180.02562 * 11 10 7 13 13 O 1.21594 * 120.00077 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00168 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99839 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.46708 * 179.97438 * 15 14 12 17 17 O 1.21285 * 120.00165 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99560 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99630 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00080 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99815 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99961 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00056 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47165 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47287 * 119.99722 * 23 21 19 26 26 H 1.48499 * 109.47520 * 239.99878 * 23 21 19 27 27 C 1.38239 * 120.00062 * 0.02871 * 6 5 4 28 28 C 1.38234 * 119.99750 * 270.02378 * 3 2 1 29 29 H 1.08998 * 109.47200 * 60.00502 * 1 2 3 30 30 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47026 * 300.00180 * 1 2 3 32 32 H 1.08997 * 109.47026 * 239.99820 * 2 1 3 33 33 H 1.08998 * 109.47200 * 119.99498 * 2 1 3 34 34 H 1.08000 * 120.00356 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.00616 * 179.70664 * 5 4 3 36 36 H 0.96693 * 114.00661 * 60.00513 * 9 7 6 37 37 H 1.09001 * 109.47449 * 299.99854 * 10 7 6 38 38 H 1.09004 * 109.47262 * 59.99654 * 10 7 6 39 39 H 0.97000 * 119.99873 * 359.97438 * 11 10 7 40 40 H 0.97000 * 119.99904 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.47126 * 299.98969 * 15 14 12 42 42 H 1.08995 * 109.47592 * 59.99297 * 15 14 12 43 43 H 0.96999 * 120.00180 * 359.97438 * 18 16 15 44 44 H 0.96999 * 119.99598 * 180.02562 * 22 21 19 45 45 H 1.08005 * 120.00103 * 179.97438 * 27 6 5 46 46 H 1.08000 * 120.00029 * 359.97337 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7229 3.3760 1.1971 6 6 2.9533 4.0276 -0.0001 7 6 3.4546 5.4488 -0.0002 8 1 3.9847 5.6472 0.9313 9 8 4.3422 5.6407 -1.1036 10 6 2.2691 6.4077 -0.1266 11 7 2.7564 7.7893 -0.1273 12 6 1.8841 8.8115 -0.2292 13 8 0.6926 8.5871 -0.3210 14 7 2.3324 10.0825 -0.2304 15 6 1.3840 11.1937 -0.3406 16 6 2.1357 12.4997 -0.3175 17 8 3.3445 12.5021 -0.2182 18 7 1.4646 13.6651 -0.4071 19 6 2.1484 14.8532 -0.3866 20 1 3.2248 14.8553 -0.2982 21 6 1.4566 16.0546 -0.4795 22 7 0.1469 16.0520 -0.5876 23 14 2.3882 17.6735 -0.4509 24 1 3.8432 17.4051 -0.3234 25 1 2.1308 18.4151 -1.7114 26 1 1.9313 18.4872 0.7043 27 6 2.7230 3.3759 -1.1973 28 6 2.2622 2.0725 -1.1972 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.0830 1.5634 2.1324 35 1 2.8984 3.8868 2.1323 36 1 3.9369 5.4811 -1.9668 37 1 1.7390 6.2093 -1.0582 38 1 1.5920 6.2612 0.7150 39 1 3.7069 7.9683 -0.0537 40 1 3.2830 10.2615 -0.1575 41 1 0.8317 11.1085 -1.2765 42 1 0.6871 11.1610 0.4968 43 1 0.4979 13.6632 -0.4868 44 1 -0.3360 16.8907 -0.6528 45 1 2.9026 3.8851 -2.1327 46 1 2.0823 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807552003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:36 Heat of formation + Delta-G solvation = -106.168856 kcal Electronic energy + Delta-G solvation = -27088.147108 eV Core-core repulsion = 22977.089547 eV Total energy + Delta-G solvation = -4111.057561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.39139 -39.70247 -38.27313 -37.65285 -34.49096 -34.44752 -34.22321 -33.61839 -31.39687 -31.34035 -30.80440 -28.52960 -26.99282 -24.77620 -24.08602 -23.24417 -22.52136 -20.99295 -20.61327 -19.57224 -18.44184 -18.03815 -17.86636 -16.56475 -16.28282 -15.73248 -15.67205 -15.58487 -15.21786 -14.91018 -14.64643 -14.41721 -14.25674 -14.13558 -13.93474 -13.79512 -13.64820 -13.57698 -13.35389 -13.08279 -12.66848 -12.27858 -12.16340 -11.85972 -11.75666 -11.62057 -11.61736 -11.38331 -11.21247 -11.13182 -10.57535 -10.39790 -10.31512 -10.04389 -9.63285 -9.31095 -9.17834 -8.95347 -8.60764 -8.59223 -8.08383 -6.50092 -3.92005 0.86994 1.02165 2.77672 3.11325 3.23498 3.30086 3.32282 3.40427 3.76861 4.01042 4.09170 4.17879 4.34051 4.37822 4.48643 4.59412 4.63327 4.67958 4.86817 4.91195 4.92134 5.03753 5.10977 5.16347 5.18778 5.45072 5.46305 5.49886 5.54707 5.58541 5.70782 5.77136 5.93025 6.00328 6.02277 6.09959 6.15892 6.22316 6.45512 6.58964 6.77038 7.10226 7.18123 7.47647 7.94253 8.25214 8.46880 8.80238 9.06317 9.41239 9.89158 10.66911 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035388 B = 0.001550 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.039367 B =18065.049779 C =18472.170874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.080 4.080 4 C -0.116 4.116 5 C -0.103 4.103 6 C -0.119 4.119 7 C 0.138 3.862 8 H 0.115 0.885 9 O -0.550 6.550 10 C 0.116 3.884 11 N -0.745 5.745 12 C 0.705 3.295 13 O -0.600 6.600 14 N -0.724 5.724 15 C 0.129 3.871 16 C 0.429 3.571 17 O -0.597 6.597 18 N -0.550 5.550 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.104 4.104 28 C -0.115 4.115 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.377 0.623 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.401 0.599 40 H 0.407 0.593 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.396 0.604 44 H 0.273 0.727 45 H 0.122 0.878 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 -30.573 0.900 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.080 4.080 4 C -0.134 4.134 5 C -0.121 4.121 6 C -0.120 4.120 7 C 0.079 3.921 8 H 0.133 0.867 9 O -0.356 6.356 10 C -0.010 4.010 11 N -0.402 5.402 12 C 0.404 3.596 13 O -0.479 6.479 14 N -0.381 5.381 15 C 0.000 4.000 16 C 0.215 3.785 17 O -0.484 6.484 18 N -0.185 5.185 19 C -0.434 4.434 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.122 4.122 28 C -0.133 4.133 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.225 0.775 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.236 0.764 40 H 0.245 0.755 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.230 0.770 44 H 0.083 0.917 45 H 0.140 0.860 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.552 -30.422 1.336 30.559 hybrid contribution 0.134 0.903 -0.381 0.989 sum 2.686 -29.520 0.955 29.657 Atomic orbital electron populations 1.21754 0.94516 1.01809 1.02424 1.20563 0.96348 0.92545 1.02896 1.19957 0.98506 0.96345 0.93227 1.21022 0.99889 0.94818 0.97672 1.20991 0.98862 0.94757 0.97453 1.20326 1.01267 0.96364 0.94024 1.21048 0.90198 0.89249 0.91623 0.86728 1.86637 1.39975 1.92186 1.16809 1.21791 0.95855 0.80040 1.03272 1.44890 1.09894 1.04653 1.80773 1.15842 0.85087 0.80602 0.78067 1.90908 1.14382 1.84252 1.58346 1.44762 1.11726 1.03347 1.78253 1.20784 0.91302 0.84909 1.02983 1.19773 0.88283 0.85032 0.85457 1.90492 1.14041 1.86837 1.56998 1.41794 1.09846 1.04508 1.62322 1.19784 0.93854 0.82047 1.47703 0.87628 1.25322 0.95672 0.99920 0.96825 1.69627 1.06316 1.28464 1.49091 0.85757 0.79670 0.80842 0.77808 1.19142 1.20639 1.20636 1.20860 0.98947 0.95034 0.97387 1.20988 0.99879 0.94736 0.97681 0.92443 0.92333 0.92448 0.91003 0.91000 0.85922 0.85670 0.77467 0.91281 0.90603 0.76407 0.75526 0.90034 0.90039 0.77023 0.91668 0.86035 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 37.16 0.37 -0.38 16 2 C -0.09 -0.45 6.06 -27.88 -0.17 -0.62 16 3 C -0.08 -0.56 5.13 -104.63 -0.54 -1.10 16 4 C -0.12 -0.83 9.70 -39.59 -0.38 -1.21 16 5 C -0.10 -0.77 9.68 -39.58 -0.38 -1.15 16 6 C -0.12 -0.93 5.00 -104.62 -0.52 -1.46 16 7 C 0.14 1.10 3.30 -27.88 -0.09 1.01 16 8 H 0.12 0.85 8.05 -51.93 -0.42 0.43 16 9 O -0.55 -4.61 12.88 -35.23 -0.45 -5.06 16 10 C 0.12 1.17 5.32 -4.04 -0.02 1.15 16 11 N -0.74 -9.00 5.45 -65.22 -0.36 -9.36 16 12 C 0.70 11.59 8.57 -86.92 -0.74 10.84 16 13 O -0.60 -11.87 16.34 5.28 0.09 -11.78 16 14 N -0.72 -12.37 5.53 -66.41 -0.37 -12.74 16 15 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 16 C 0.43 9.93 7.85 -10.98 -0.09 9.84 16 17 O -0.60 -15.37 15.24 5.55 0.08 -15.29 16 18 N -0.55 -13.72 5.29 -10.96 -0.06 -13.78 16 19 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 20 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 22 N -0.89 -23.98 13.05 55.50 0.72 -23.25 16 23 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.10 -0.77 9.33 -39.58 -0.37 -1.13 16 28 C -0.11 -0.81 9.70 -39.58 -0.38 -1.20 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.38 2.19 7.39 45.56 0.34 2.53 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.40 4.19 8.36 -40.82 -0.34 3.85 16 40 H 0.41 6.79 7.45 -40.82 -0.30 6.49 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.40 9.51 7.90 -40.82 -0.32 9.19 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.12 0.67 6.62 -52.48 -0.35 0.32 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 LS Contribution 394.11 15.07 5.94 5.94 Total: -1.00 -33.49 394.11 -9.00 -42.49 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -5.97 Total: 18.16 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -3.60 Total: 9.11 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.06 Total: -59.13 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.28 Total: -32.14 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.49 -9.00 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807552003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.683 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds