Wall clock time and date at job start Tue Mar 31 2020 20:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47057 * 2 1 4 4 C 1.38230 * 120.00365 * 89.99644 * 3 2 1 5 5 C 1.38235 * 120.00326 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00196 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46818 * 25.00639 * 7 6 5 9 9 O 1.42899 * 109.46823 * 145.00426 * 7 6 5 10 10 C 1.52994 * 109.47165 * 265.00399 * 7 6 5 11 11 N 1.46505 * 109.47107 * 180.02562 * 10 7 6 12 12 C 1.34773 * 120.00199 * 180.02562 * 11 10 7 13 13 O 1.21594 * 120.00077 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00168 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99839 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.46708 * 179.97438 * 15 14 12 17 17 O 1.21285 * 120.00165 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99560 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99630 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00080 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99815 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99961 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00056 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47165 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47287 * 119.99722 * 23 21 19 26 26 H 1.48499 * 109.47520 * 239.99878 * 23 21 19 27 27 C 1.38239 * 120.00062 * 0.02871 * 6 5 4 28 28 C 1.38234 * 119.99750 * 270.02378 * 3 2 1 29 29 H 1.08998 * 109.47200 * 60.00502 * 1 2 3 30 30 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47026 * 300.00180 * 1 2 3 32 32 H 1.08997 * 109.47026 * 239.99820 * 2 1 3 33 33 H 1.08998 * 109.47200 * 119.99498 * 2 1 3 34 34 H 1.08000 * 120.00356 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.00616 * 179.70664 * 5 4 3 36 36 H 0.96693 * 114.00661 * 60.00513 * 9 7 6 37 37 H 1.09001 * 109.47449 * 299.99854 * 10 7 6 38 38 H 1.09004 * 109.47262 * 59.99654 * 10 7 6 39 39 H 0.97000 * 119.99873 * 359.97438 * 11 10 7 40 40 H 0.97000 * 119.99904 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.47126 * 299.98969 * 15 14 12 42 42 H 1.08995 * 109.47592 * 59.99297 * 15 14 12 43 43 H 0.96999 * 120.00180 * 359.97438 * 18 16 15 44 44 H 0.96999 * 119.99598 * 180.02562 * 22 21 19 45 45 H 1.08005 * 120.00103 * 179.97438 * 27 6 5 46 46 H 1.08000 * 120.00029 * 359.97337 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7229 3.3760 1.1971 6 6 2.9533 4.0276 -0.0001 7 6 3.4546 5.4488 -0.0002 8 1 3.9847 5.6472 0.9313 9 8 4.3422 5.6407 -1.1036 10 6 2.2691 6.4077 -0.1266 11 7 2.7564 7.7893 -0.1273 12 6 1.8841 8.8115 -0.2292 13 8 0.6926 8.5871 -0.3210 14 7 2.3324 10.0825 -0.2304 15 6 1.3840 11.1937 -0.3406 16 6 2.1357 12.4997 -0.3175 17 8 3.3445 12.5021 -0.2182 18 7 1.4646 13.6651 -0.4071 19 6 2.1484 14.8532 -0.3866 20 1 3.2248 14.8553 -0.2982 21 6 1.4566 16.0546 -0.4795 22 7 0.1469 16.0520 -0.5876 23 14 2.3882 17.6735 -0.4509 24 1 3.8432 17.4051 -0.3234 25 1 2.1308 18.4151 -1.7114 26 1 1.9313 18.4872 0.7043 27 6 2.7230 3.3759 -1.1973 28 6 2.2622 2.0725 -1.1972 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.0830 1.5634 2.1324 35 1 2.8984 3.8868 2.1323 36 1 3.9369 5.4811 -1.9668 37 1 1.7390 6.2093 -1.0582 38 1 1.5920 6.2612 0.7150 39 1 3.7069 7.9683 -0.0537 40 1 3.2830 10.2615 -0.1575 41 1 0.8317 11.1085 -1.2765 42 1 0.6871 11.1610 0.4968 43 1 0.4979 13.6632 -0.4868 44 1 -0.3360 16.8907 -0.6528 45 1 2.9026 3.8851 -2.1327 46 1 2.0823 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807552003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:35 Heat of formation + Delta-G solvation = -131.505399 kcal Electronic energy + Delta-G solvation = -27089.245783 eV Core-core repulsion = 22977.089547 eV Total energy + Delta-G solvation = -4112.156236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32916 -40.70265 -39.99178 -38.41024 -36.24691 -35.35149 -35.26306 -34.92556 -33.36215 -31.90272 -31.44616 -29.65893 -28.20146 -26.35724 -24.99914 -23.77303 -23.13264 -22.04115 -21.38349 -21.35501 -20.11460 -19.60469 -18.61678 -17.43110 -17.38981 -17.25937 -16.75815 -16.49504 -16.40095 -15.95703 -15.91999 -15.84600 -15.32634 -15.20266 -15.09067 -14.73376 -14.51953 -14.17999 -14.05514 -13.93305 -13.80950 -13.59967 -13.54095 -13.27490 -12.90219 -12.75128 -12.43664 -12.28014 -12.10608 -12.10114 -11.88710 -11.66024 -11.57160 -11.52074 -11.15981 -10.54808 -10.45945 -10.09404 -9.86127 -9.80953 -9.49409 -8.50337 -6.00476 0.32225 0.49364 1.35875 1.43336 1.55127 1.61609 1.90421 2.10404 2.29338 2.75719 3.04129 3.16991 3.28717 3.43359 3.67250 3.82129 3.86370 3.98387 4.08791 4.14213 4.22245 4.32613 4.43903 4.46859 4.50719 4.55900 4.59558 4.68499 4.70462 4.88375 5.03674 5.07607 5.10152 5.21233 5.30774 5.37381 5.39325 5.41410 5.49659 5.60779 5.72614 5.91064 5.94955 6.08440 6.49032 6.64937 7.01739 7.04498 7.43271 7.52257 7.95471 8.66809 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035388 B = 0.001550 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.039367 B =18065.049779 C =18472.170874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.131 4.131 7 C 0.154 3.846 8 H 0.122 0.878 9 O -0.560 6.560 10 C 0.117 3.883 11 N -0.727 5.727 12 C 0.704 3.296 13 O -0.633 6.633 14 N -0.724 5.724 15 C 0.142 3.858 16 C 0.434 3.566 17 O -0.624 6.624 18 N -0.559 5.559 19 C -0.337 4.337 20 H 0.086 0.914 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.997 3.003 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.271 1.271 27 C -0.114 4.114 28 C -0.126 4.126 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.387 0.613 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.412 0.588 40 H 0.410 0.590 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.399 0.601 44 H 0.280 0.720 45 H 0.136 0.864 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 -31.425 0.883 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.145 4.145 5 C -0.131 4.131 6 C -0.132 4.132 7 C 0.094 3.906 8 H 0.139 0.861 9 O -0.368 6.368 10 C -0.007 4.007 11 N -0.384 5.384 12 C 0.404 3.596 13 O -0.515 6.515 14 N -0.381 5.381 15 C 0.013 3.987 16 C 0.221 3.779 17 O -0.512 6.512 18 N -0.195 5.195 19 C -0.466 4.466 20 H 0.104 0.896 21 C -0.211 4.211 22 N -0.556 5.556 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.131 4.131 28 C -0.144 4.144 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.238 0.762 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.248 0.752 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.154 0.846 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.926 -31.315 1.314 31.479 hybrid contribution 0.022 1.053 -0.385 1.121 sum 2.948 -30.262 0.930 30.420 Atomic orbital electron populations 1.21741 0.94458 1.02356 1.01805 1.20595 0.96302 0.91637 1.03674 1.20243 0.98045 0.97213 0.93220 1.21269 0.99889 0.94904 0.98453 1.21225 0.98821 0.95155 0.97913 1.20356 1.02133 0.96261 0.94481 1.20882 0.89126 0.88744 0.91845 0.86067 1.86616 1.40363 1.92205 1.17569 1.21913 0.96869 0.79159 1.02805 1.44804 1.09914 1.04540 1.79117 1.15938 0.85027 0.80816 0.77832 1.90887 1.15978 1.84675 1.59976 1.44684 1.11485 1.03319 1.78638 1.20584 0.91074 0.83099 1.03906 1.20422 0.88090 0.85924 0.83503 1.90469 1.15463 1.87528 1.57693 1.41835 1.09952 1.04629 1.63063 1.19785 0.93362 0.83597 1.49903 0.89562 1.26121 0.96524 1.02664 0.95773 1.69690 1.07309 1.29630 1.48987 0.84806 0.78128 0.76722 0.78277 1.19437 1.19669 1.19657 1.21117 0.98729 0.95371 0.97922 1.21246 0.99875 0.94878 0.98435 0.93055 0.91218 0.93054 0.90235 0.90230 0.84603 0.84598 0.76244 0.91695 0.91205 0.75177 0.75200 0.89055 0.89052 0.76692 0.91092 0.84626 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 71.98 0.71 -0.60 16 2 C -0.08 -0.76 6.06 29.85 0.18 -0.58 16 3 C -0.09 -1.12 5.13 -19.87 -0.10 -1.22 16 4 C -0.13 -1.68 9.70 22.27 0.22 -1.47 16 5 C -0.11 -1.59 9.68 22.27 0.22 -1.38 16 6 C -0.13 -1.93 5.00 -19.86 -0.10 -2.03 16 7 C 0.15 2.24 3.30 29.85 0.10 2.33 16 8 H 0.12 1.61 8.05 -2.39 -0.02 1.59 16 9 O -0.56 -8.51 12.88 -148.98 -1.92 -10.43 16 10 C 0.12 2.25 5.32 86.38 0.46 2.71 16 11 N -0.73 -16.71 5.45 -478.53 -2.61 -19.32 16 12 C 0.70 22.53 8.57 179.06 1.53 24.06 16 13 O -0.63 -24.65 16.34 -4.01 -0.07 -24.72 16 14 N -0.72 -24.17 5.53 -482.28 -2.67 -26.84 16 15 C 0.14 5.28 6.15 85.63 0.53 5.81 16 16 C 0.43 20.13 7.85 87.66 0.69 20.82 16 17 O -0.62 -32.31 15.24 -3.05 -0.05 -32.36 16 18 N -0.56 -28.20 5.29 -306.98 -1.62 -29.82 16 19 C -0.34 -18.63 9.68 84.04 0.81 -17.82 16 20 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 21 C -0.01 -0.53 5.50 84.92 0.47 -0.07 16 22 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 23 Si 1.00 41.82 29.55 68.60 2.03 43.85 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 27 C -0.11 -1.54 9.33 22.27 0.21 -1.33 16 28 C -0.13 -1.65 9.70 22.27 0.22 -1.43 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 33 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 34 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.39 3.91 7.39 -74.06 -0.55 3.37 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.41 7.96 8.36 -92.71 -0.78 7.19 16 40 H 0.41 13.38 7.45 -92.71 -0.69 12.69 16 41 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 42 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 44 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 45 H 0.14 1.31 6.62 -2.91 -0.02 1.30 16 46 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -70.50 394.11 -2.19 -72.68 By element: Atomic # 1 Polarization: 49.29 SS G_CDS: -1.70 Total: 47.59 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 6.13 Total: 27.81 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -6.62 Total: -124.43 kcal Atomic # 8 Polarization: -65.48 SS G_CDS: -2.03 Total: -67.51 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -70.50 -2.19 -72.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807552003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.821 kcal (2) G-P(sol) polarization free energy of solvation -70.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds