Wall clock time and date at job start Tue Mar 31 2020 19:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31812 * 119.12401 * 2 1 4 4 C 1.32312 * 120.82339 * 180.02562 * 3 2 1 5 5 C 1.38622 * 119.10398 * 0.02562 * 4 3 2 6 6 C 1.38581 * 118.39451 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.44587 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47402 * 124.99641 * 7 6 5 9 9 C 1.50690 * 109.47602 * 180.02562 * 8 7 6 10 10 O 1.20835 * 119.99848 * 359.97438 * 9 8 7 11 11 O 1.34228 * 120.00597 * 180.02562 * 9 8 7 12 12 C 1.45198 * 117.00315 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.47190 * 30.00040 * 12 11 9 14 14 C 1.53008 * 109.46767 * 269.99870 * 12 11 9 15 15 C 1.50700 * 109.47249 * 150.00443 * 12 11 9 16 16 O 1.21281 * 119.99959 * 16.01589 * 15 12 11 17 17 N 1.34778 * 119.99806 * 196.02758 * 15 12 11 18 18 C 1.46494 * 120.00128 * 5.36099 * 17 15 12 19 19 C 1.46499 * 119.99700 * 185.35729 * 17 15 12 20 20 C 1.50702 * 109.46860 * 89.99917 * 19 17 15 21 21 H 1.07999 * 120.00293 * 0.02562 * 20 19 17 22 22 C 1.37886 * 120.00009 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99899 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99761 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47675 * 89.99696 * 24 22 20 26 26 H 1.48501 * 109.46849 * 209.99988 * 24 22 20 27 27 H 1.48503 * 109.47182 * 329.99508 * 24 22 20 28 28 N 1.31784 * 119.12652 * 180.29697 * 2 1 3 29 29 H 1.08994 * 109.46871 * 90.00191 * 1 2 3 30 30 H 1.09003 * 109.46868 * 209.99862 * 1 2 3 31 31 H 1.09001 * 109.47276 * 329.99666 * 1 2 3 32 32 H 1.08002 * 120.45039 * 180.02562 * 4 3 2 33 33 H 1.08002 * 120.80346 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47169 * 4.99741 * 7 6 5 35 35 H 1.09002 * 109.47315 * 245.00184 * 7 6 5 36 36 H 1.09003 * 109.46877 * 59.99921 * 8 7 6 37 37 H 1.09002 * 109.47329 * 300.00534 * 8 7 6 38 38 H 1.09003 * 109.47298 * 66.14029 * 14 12 11 39 39 H 1.08997 * 109.47061 * 306.13670 * 14 12 11 40 40 H 1.09000 * 109.46859 * 186.13817 * 14 12 11 41 41 H 1.08998 * 109.47479 * 84.82343 * 18 17 15 42 42 H 1.09002 * 109.47016 * 204.82429 * 18 17 15 43 43 H 1.09000 * 109.46810 * 324.81906 * 18 17 15 44 44 H 1.09003 * 109.47348 * 209.99678 * 19 17 15 45 45 H 1.09008 * 109.47508 * 330.00271 * 19 17 15 46 46 H 0.96998 * 119.99785 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1907 -0.0005 5 6 4.1809 0.0000 -0.0016 6 6 3.4713 -1.1903 -0.0015 7 6 4.1962 -2.5115 -0.0021 8 6 3.7167 -3.3569 1.1795 9 6 4.4420 -4.6777 1.1794 10 8 5.2584 -4.9186 0.3217 11 8 4.1805 -5.5873 2.1313 12 6 4.9171 -6.8370 2.0692 13 1 5.8947 -6.6606 1.6208 14 6 4.1405 -7.8449 1.2193 15 6 5.0945 -7.3853 3.4616 16 8 4.4154 -6.9598 4.3720 17 7 6.0079 -8.3484 3.6953 18 6 6.9086 -8.7794 2.6233 19 6 6.1001 -8.9642 5.0214 20 6 5.1900 -10.1639 5.0824 21 1 4.6022 -10.4403 4.2196 22 6 5.1087 -10.9094 6.2395 23 7 4.3149 -11.9566 6.2925 24 14 6.1260 -10.4319 7.7316 25 1 5.3507 -9.4903 8.5787 26 1 6.4543 -11.6488 8.5168 27 1 7.3819 -9.7770 7.2854 28 7 2.1484 -1.1512 -0.0060 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 3.9905 2.1376 -0.0001 33 1 5.2609 0.0000 -0.0024 34 1 5.2686 -2.3376 0.0870 35 1 3.9899 -3.0388 -0.9335 36 1 2.6444 -3.5308 1.0904 37 1 3.9231 -2.8296 2.1110 38 1 4.1063 -7.4991 0.1862 39 1 3.1253 -7.9392 1.6048 40 1 4.6367 -8.8145 1.2617 41 1 7.7706 -8.1134 2.5833 42 1 7.2448 -9.7976 2.8187 43 1 6.3804 -8.7477 1.6704 44 1 7.1276 -9.2779 5.2057 45 1 5.7993 -8.2411 5.7796 46 1 4.2574 -12.4808 7.1066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829702631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:18 Heat of formation + Delta-G solvation = -72.403910 kcal Electronic energy + Delta-G solvation = -27988.388431 eV Core-core repulsion = 23878.795028 eV Total energy + Delta-G solvation = -4109.593403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53244 -40.75167 -39.09494 -36.71369 -35.48697 -35.02422 -33.81810 -32.82661 -32.22142 -31.45907 -28.95549 -28.42574 -26.71894 -26.17964 -24.46363 -23.64029 -22.61747 -21.90352 -20.58279 -18.85589 -18.09736 -17.99805 -17.01115 -16.77510 -16.62036 -16.47215 -15.91995 -15.62689 -15.54744 -15.10098 -14.89889 -14.40059 -14.17687 -13.73089 -13.60518 -13.38704 -13.14285 -13.02619 -12.84745 -12.73607 -12.48771 -12.38953 -12.28049 -12.24838 -11.93263 -11.73343 -11.52061 -11.45987 -11.26128 -10.98253 -10.95638 -10.74816 -10.61053 -10.52700 -10.19184 -9.81156 -9.63114 -9.58882 -9.05068 -8.62780 -7.81639 -6.12728 -4.12310 0.47300 0.63574 2.08297 2.39359 3.12686 3.26994 3.30051 3.33017 3.35104 3.45581 3.65605 3.75803 4.04694 4.35760 4.36392 4.60233 4.63339 4.69969 4.73062 4.78696 4.95334 4.98549 5.06368 5.07616 5.16596 5.18123 5.20743 5.37818 5.46230 5.49747 5.56641 5.61823 5.67585 5.71658 5.75895 6.01441 6.03586 6.21988 6.37770 6.61173 6.62523 6.87829 7.21369 7.54753 7.63447 7.70301 8.08076 8.41003 8.78513 8.90259 9.46837 11.00352 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021234 B = 0.001980 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.302817 B =14138.415222 C =14466.836285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.321 3.679 3 N -0.525 5.525 4 C 0.154 3.846 5 C -0.231 4.231 6 C 0.183 3.817 7 C -0.059 4.059 8 C -0.105 4.105 9 C 0.463 3.537 10 O -0.514 6.514 11 O -0.325 6.325 12 C 0.072 3.928 13 H 0.103 0.897 14 C -0.165 4.165 15 C 0.512 3.488 16 O -0.520 6.520 17 N -0.592 5.592 18 C 0.073 3.927 19 C 0.216 3.784 20 C -0.533 4.533 21 H 0.076 0.924 22 C 0.073 3.927 23 N -0.895 5.895 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.266 1.266 28 N -0.515 5.515 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.170 0.830 33 H 0.150 0.850 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.039 0.961 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 23.163 -16.217 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.240 5.240 4 C -0.012 4.012 5 C -0.253 4.253 6 C 0.037 3.963 7 C -0.097 4.097 8 C -0.143 4.143 9 C 0.307 3.693 10 O -0.402 6.402 11 O -0.240 6.240 12 C 0.014 3.986 13 H 0.121 0.879 14 C -0.222 4.222 15 C 0.297 3.703 16 O -0.395 6.395 17 N -0.326 5.326 18 C -0.070 4.070 19 C 0.096 3.904 20 C -0.571 4.571 21 H 0.094 0.906 22 C -0.130 4.130 23 N -0.533 5.533 24 Si 0.703 3.297 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.191 1.191 28 N -0.231 5.231 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.187 0.813 33 H 0.167 0.833 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.600 23.118 -15.829 28.024 hybrid contribution 1.624 -0.025 0.687 1.764 sum 1.025 23.092 -15.142 27.633 Atomic orbital electron populations 1.20599 0.85527 1.04434 1.03981 1.23315 0.98288 0.83215 0.89729 1.68278 1.10237 1.30542 1.14979 1.23257 0.89669 0.98691 0.89578 1.22793 1.03119 0.94070 1.05301 1.21611 0.89651 0.95593 0.89434 1.20425 0.99609 0.90030 0.99670 1.21233 1.02646 0.89691 1.00778 1.23662 0.80591 0.86244 0.78824 1.90647 1.33421 1.79110 1.37064 1.86636 1.61431 1.25891 1.50045 1.22637 0.97165 0.82404 0.96424 0.87881 1.22167 1.02144 0.98758 0.99177 1.19797 0.81050 0.80702 0.88778 1.90696 1.44771 1.58900 1.45130 1.47743 1.33916 1.37035 1.13870 1.21861 0.93280 1.01564 0.90325 1.19742 0.97439 0.93905 0.79342 1.21314 1.25389 1.09595 1.00803 0.90639 1.24857 0.95122 0.94643 0.98361 1.69891 1.37703 1.17541 1.28193 0.86844 0.81122 0.78296 0.83393 1.19838 1.21014 1.19053 1.68089 1.09464 1.30687 1.14830 0.89544 0.89319 0.89547 0.81337 0.83264 0.88561 0.88091 0.86274 0.87512 0.91169 0.90474 0.89377 0.93308 0.89873 0.91894 0.94851 0.94293 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.32 36.00 0.37 -0.19 16 2 C 0.32 3.01 7.64 -157.19 -1.20 1.81 16 3 N -0.53 -4.89 10.33 -10.72 -0.11 -5.00 16 4 C 0.15 1.08 11.31 -17.20 -0.19 0.88 16 5 C -0.23 -1.55 9.80 -39.31 -0.39 -1.94 16 6 C 0.18 1.56 6.20 -82.24 -0.51 1.05 16 7 C -0.06 -0.47 4.94 -27.88 -0.14 -0.61 16 8 C -0.11 -1.00 5.68 -27.89 -0.16 -1.16 16 9 C 0.46 6.01 7.93 36.00 0.29 6.29 16 10 O -0.51 -7.22 15.20 -18.76 -0.29 -7.50 16 11 O -0.33 -5.23 9.47 -45.74 -0.43 -5.66 16 12 C 0.07 1.17 2.14 -27.88 -0.06 1.11 16 13 H 0.10 1.50 6.31 -51.93 -0.33 1.17 16 14 C -0.17 -2.37 9.19 37.16 0.34 -2.03 16 15 C 0.51 10.71 6.95 -10.98 -0.08 10.63 16 16 O -0.52 -13.10 16.13 -13.54 -0.22 -13.32 16 17 N -0.59 -12.14 2.86 -182.95 -0.52 -12.67 16 18 C 0.07 1.11 9.79 59.84 0.59 1.69 16 19 C 0.22 5.23 4.25 -5.19 -0.02 5.21 16 20 C -0.53 -15.06 9.94 -34.44 -0.34 -15.41 16 21 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 22 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 23 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 24 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 28 N -0.52 -5.11 9.94 -6.99 -0.07 -5.18 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.15 0.60 8.01 -52.49 -0.42 0.18 16 34 H 0.10 0.66 7.90 -51.93 -0.41 0.25 16 35 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.12 1.11 7.99 -51.93 -0.41 0.69 16 37 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.22 6.33 -51.93 -0.33 0.89 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 43 H 0.06 0.81 4.92 -51.93 -0.26 0.55 16 44 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 45 H 0.04 1.01 6.78 -51.92 -0.35 0.66 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -36.91 390.58 -7.94 -44.85 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.69 Total: -0.96 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -1.60 Total: 9.36 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.07 Total: -49.34 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.94 Total: -26.48 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.91 -7.94 -44.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829702631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.557 kcal (2) G-P(sol) polarization free energy of solvation -36.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds