Wall clock time and date at job start Tue Mar 31 2020 19:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99918 * 2 1 4 4 O 1.20821 * 119.99780 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99682 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.46652 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46830 * 175.02071 * 6 5 3 8 8 C 1.37095 * 120.00089 * 325.82664 * 7 6 5 9 9 H 1.08005 * 119.99981 * 343.14130 * 8 7 6 10 10 C 1.38950 * 120.00088 * 163.14317 * 8 7 6 11 11 N 1.31406 * 119.99875 * 72.31694 * 10 8 7 12 12 Si 1.86795 * 119.99773 * 252.31806 * 10 8 7 13 13 H 1.48505 * 109.47146 * 89.99924 * 12 10 8 14 14 H 1.48506 * 109.47285 * 209.99638 * 12 10 8 15 15 H 1.48505 * 109.47386 * 330.00106 * 12 10 8 16 16 C 1.34775 * 119.99982 * 145.83047 * 7 6 5 17 17 O 1.21283 * 120.00159 * 186.93738 * 16 7 6 18 18 C 1.50710 * 119.99981 * 6.93544 * 16 7 6 19 19 H 1.08999 * 109.38782 * 43.76149 * 18 16 7 20 20 C 1.53118 * 109.42897 * 283.88531 * 18 16 7 21 21 C 1.53712 * 109.09440 * 169.77807 * 20 18 16 22 22 C 1.50716 * 107.97933 * 49.05776 * 21 20 18 23 23 C 1.33868 * 128.67742 * 163.59558 * 22 21 20 24 24 N 1.34425 * 107.79528 * 180.13586 * 23 22 21 25 25 C 1.30795 * 109.32220 * 359.97438 * 24 23 22 26 26 C 1.50702 * 125.72412 * 179.97438 * 25 24 23 27 27 N 1.34401 * 108.54817 * 0.21068 * 25 24 23 28 28 C 1.46477 * 128.44150 * 179.91681 * 27 25 24 29 29 H 1.09002 * 109.47102 * 299.99146 * 1 2 3 30 30 H 1.09000 * 109.47665 * 59.99864 * 1 2 3 31 31 H 1.09003 * 109.47232 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47097 * 60.00410 * 5 3 2 33 33 H 1.09002 * 109.47067 * 300.00232 * 5 3 2 34 34 H 1.08999 * 109.46857 * 55.02236 * 6 5 3 35 35 H 1.08998 * 109.47521 * 295.02390 * 6 5 3 36 36 H 0.97000 * 119.99689 * 184.91491 * 11 10 8 37 37 H 1.09008 * 109.49451 * 289.95979 * 20 18 16 38 38 H 1.09000 * 109.50199 * 50.02584 * 20 18 16 39 39 H 1.09001 * 110.30507 * 289.14551 * 21 20 18 40 40 H 1.08994 * 109.26415 * 168.37544 * 21 20 18 41 41 H 1.07994 * 126.10130 * 0.15671 * 23 22 21 42 42 H 1.09000 * 109.46711 * 90.02689 * 26 25 24 43 43 H 1.08999 * 109.47144 * 330.03091 * 26 25 24 44 44 H 1.08994 * 109.47084 * 210.02590 * 26 25 24 45 45 H 1.09003 * 109.59924 * 282.43501 * 28 27 25 46 46 H 1.09008 * 109.59912 * 42.74754 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4582 2.8201 0.1195 8 6 6.1354 1.8920 0.8675 9 1 5.6024 1.2790 1.5792 10 6 7.5076 1.7401 0.7100 11 7 8.3270 2.6613 1.1645 12 14 8.1872 0.2263 -0.1478 13 1 8.3000 0.4916 -1.6046 14 1 9.5289 -0.0939 0.4023 15 1 7.2731 -0.9223 0.0768 16 6 6.1337 3.8044 -0.5060 17 8 7.3465 3.7982 -0.5126 18 6 5.3821 4.9127 -1.1973 19 1 4.5633 5.2468 -0.5602 20 6 4.8176 4.3954 -2.5233 21 6 3.8457 5.4388 -3.0972 22 6 4.5307 6.7809 -3.0631 23 6 4.2045 7.9034 -3.7156 24 7 5.1009 8.8479 -3.3817 25 6 5.9692 8.3435 -2.5436 26 6 7.1334 9.0803 -1.9330 27 7 5.6519 7.0563 -2.3223 28 6 6.3321 6.0857 -1.4617 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.9556 0.7810 -0.8908 33 1 3.9564 0.7805 0.8891 34 1 3.5385 3.2569 0.8428 35 1 3.6859 3.2144 -0.9305 36 1 9.2791 2.5911 0.9924 37 1 5.6343 4.2262 -3.2251 38 1 4.2855 3.4597 -2.3518 39 1 2.9343 5.4754 -2.5005 40 1 3.6023 5.1757 -4.1266 41 1 3.3700 8.0281 -4.3896 42 1 6.8198 9.5437 -0.9976 43 1 7.4777 9.8509 -2.6227 44 1 7.9447 8.3792 -1.7371 45 1 7.2308 5.7220 -1.9598 46 1 6.6034 6.5603 -0.5186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:47 Heat of formation + Delta-G solvation = -25.953210 kcal Electronic energy + Delta-G solvation = -30127.192494 eV Core-core repulsion = 26019.613344 eV Total energy + Delta-G solvation = -4107.579150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.14426 -40.36545 -38.98180 -36.52946 -35.89971 -34.73437 -33.09236 -32.58470 -30.96973 -30.49153 -29.50821 -27.65607 -26.19600 -25.76408 -24.08246 -23.15380 -21.90788 -20.70785 -20.38417 -19.56506 -18.50362 -17.51477 -17.04272 -16.53829 -16.35300 -16.16438 -15.82660 -15.14122 -14.93258 -14.51800 -14.35865 -14.08491 -13.92183 -13.56148 -13.50958 -13.34302 -13.09226 -12.86706 -12.75654 -12.56015 -12.37438 -12.23328 -12.16753 -11.97998 -11.62777 -11.55562 -11.25223 -11.03001 -10.87344 -10.78873 -10.70417 -10.60208 -10.36157 -10.30083 -10.08957 -9.71330 -9.23796 -9.01350 -8.16204 -7.96464 -7.21540 -6.68976 -3.56111 2.28363 2.34557 2.79341 3.03042 3.29255 3.31893 3.42301 3.46858 3.99490 4.19044 4.63026 4.64800 4.70126 4.75115 4.90541 4.98812 5.04507 5.10723 5.11800 5.15430 5.26861 5.35713 5.43149 5.51048 5.53330 5.56697 5.60933 5.61566 5.68637 5.81664 5.87568 5.93105 5.99393 6.01936 6.07736 6.17016 6.28616 6.35824 6.43487 6.53334 6.68190 6.98848 7.45803 7.47410 7.81562 7.88297 8.31200 8.75045 9.09171 9.49462 10.13772 10.33898 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008923 B = 0.004659 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.370316 B = 6008.303272 C = 8589.607168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.514 6.514 5 C -0.116 4.116 6 C 0.119 3.881 7 N -0.425 5.425 8 C -0.464 4.464 9 H 0.100 0.900 10 C 0.157 3.843 11 N -0.673 5.673 12 Si 0.807 3.193 13 H -0.278 1.278 14 H -0.292 1.292 15 H -0.267 1.267 16 C 0.418 3.582 17 O -0.544 6.544 18 C -0.109 4.109 19 H 0.082 0.918 20 C -0.119 4.119 21 C -0.045 4.045 22 C -0.022 4.022 23 C -0.033 4.033 24 N -0.501 5.501 25 C 0.202 3.798 26 C -0.067 4.067 27 N -0.445 5.445 28 C 0.127 3.873 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.269 0.731 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.165 0.835 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 0.962 -4.367 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.403 6.403 5 C -0.154 4.154 6 C -0.006 4.006 7 N -0.144 5.144 8 C -0.581 4.581 9 H 0.117 0.883 10 C -0.071 4.071 11 N -0.295 5.295 12 Si 0.628 3.372 13 H -0.204 1.204 14 H -0.219 1.219 15 H -0.192 1.192 16 C 0.208 3.792 17 O -0.426 6.426 18 C -0.132 4.132 19 H 0.100 0.900 20 C -0.157 4.157 21 C -0.084 4.084 22 C -0.137 4.137 23 C -0.180 4.180 24 N -0.221 5.221 25 C -0.060 4.060 26 C -0.125 4.125 27 N -0.127 5.127 28 C 0.005 3.995 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.182 0.818 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.007 2.098 -4.377 10.231 hybrid contribution 0.017 -1.577 -0.221 1.592 sum -8.990 0.522 -4.598 10.111 Atomic orbital electron populations 1.23209 0.76994 1.03337 1.02363 1.86550 1.22961 1.33976 1.84265 1.24186 0.92555 0.81000 0.71566 1.90642 1.67514 1.36296 1.45802 1.21650 0.85086 1.00943 1.07740 1.21287 0.83716 0.93594 1.01995 1.43318 1.03183 1.24919 1.43028 1.18336 0.90913 1.20166 1.28649 0.88297 1.24514 0.95028 0.94524 0.93014 1.70800 1.04788 1.32363 1.21586 0.87886 0.78066 0.87932 0.83353 1.20398 1.21850 1.19186 1.19122 0.88013 0.83977 0.88120 1.90642 1.12841 1.76960 1.62149 1.21476 0.98449 0.95561 0.97685 0.89990 1.21833 0.99166 0.98652 0.96033 1.20294 0.97423 0.88435 1.02202 1.21160 0.92739 0.98789 1.01005 1.21724 1.01775 0.89412 1.05116 1.70390 1.05283 1.31468 1.14909 1.23033 1.00255 0.82303 1.00441 1.20145 0.92264 0.99475 1.00635 1.45438 1.22221 1.10525 1.34552 1.21742 0.95725 0.87764 0.94284 0.92061 0.92084 0.88418 0.87214 0.85782 0.92510 0.90449 0.91945 0.91087 0.89907 0.89906 0.89770 0.81750 0.90402 0.89529 0.90719 0.88488 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.73 10.57 -39.26 -0.41 -5.14 16 3 C 0.46 6.80 7.96 36.01 0.29 7.09 16 4 O -0.51 -8.49 15.67 -18.75 -0.29 -8.78 16 5 C -0.12 -1.79 5.42 -27.88 -0.15 -1.94 16 6 C 0.12 2.07 4.61 -4.04 -0.02 2.05 16 7 N -0.43 -9.29 2.97 -114.81 -0.34 -9.63 16 8 C -0.46 -11.31 8.51 -14.93 -0.13 -11.43 16 9 H 0.10 2.34 6.60 -52.48 -0.35 1.99 16 10 C 0.16 4.02 3.64 -17.47 -0.06 3.96 16 11 N -0.67 -18.04 11.46 55.50 0.64 -17.40 16 12 Si 0.81 18.80 29.69 -169.99 -5.05 13.76 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 C 0.42 9.34 6.79 -10.98 -0.07 9.26 16 17 O -0.54 -14.14 11.81 5.56 0.07 -14.08 16 18 C -0.11 -1.92 1.69 -91.59 -0.16 -2.08 16 19 H 0.08 1.42 7.62 -51.93 -0.40 1.02 16 20 C -0.12 -1.81 4.81 -26.30 -0.13 -1.93 16 21 C -0.05 -0.59 6.31 -27.50 -0.17 -0.77 16 22 C -0.02 -0.34 6.57 -81.73 -0.54 -0.87 16 23 C -0.03 -0.51 11.84 -17.95 -0.21 -0.72 16 24 N -0.50 -8.62 11.27 -11.02 -0.12 -8.74 16 25 C 0.20 3.25 7.94 -155.75 -1.24 2.01 16 26 C -0.07 -0.82 10.24 36.01 0.37 -0.45 16 27 N -0.44 -7.29 3.13 -109.45 -0.34 -7.63 16 28 C 0.13 2.17 5.50 -3.93 -0.02 2.14 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.12 1.98 6.34 -51.93 -0.33 1.65 16 34 H 0.06 1.02 7.96 -51.93 -0.41 0.60 16 35 H 0.08 1.23 4.26 -51.93 -0.22 1.01 16 36 H 0.27 6.86 8.32 -40.82 -0.34 6.52 16 37 H 0.07 1.15 8.12 -51.92 -0.42 0.72 16 38 H 0.08 1.21 5.66 -51.93 -0.29 0.91 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 45 H 0.10 1.78 7.59 -51.93 -0.39 1.39 16 46 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -31.92 372.02 -8.02 -39.95 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.59 Total: 4.38 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.18 Total: 7.72 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -0.17 Total: -43.41 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.64 Total: -28.00 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.05 Total: 13.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.92 -8.02 -39.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.992 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds