Wall clock time and date at job start Tue Mar 31 2020 19:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99918 * 2 1 4 4 O 1.20821 * 119.99780 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99682 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.46652 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46830 * 175.02071 * 6 5 3 8 8 C 1.37095 * 120.00089 * 325.82664 * 7 6 5 9 9 H 1.08005 * 119.99981 * 343.14130 * 8 7 6 10 10 C 1.38950 * 120.00088 * 163.14317 * 8 7 6 11 11 N 1.31406 * 119.99875 * 72.31694 * 10 8 7 12 12 Si 1.86795 * 119.99773 * 252.31806 * 10 8 7 13 13 H 1.48505 * 109.47146 * 89.99924 * 12 10 8 14 14 H 1.48506 * 109.47285 * 209.99638 * 12 10 8 15 15 H 1.48505 * 109.47386 * 330.00106 * 12 10 8 16 16 C 1.34775 * 119.99982 * 145.83047 * 7 6 5 17 17 O 1.21283 * 120.00159 * 186.93738 * 16 7 6 18 18 C 1.50710 * 119.99981 * 6.93544 * 16 7 6 19 19 H 1.08999 * 109.38782 * 43.76149 * 18 16 7 20 20 C 1.53118 * 109.42897 * 283.88531 * 18 16 7 21 21 C 1.53712 * 109.09440 * 169.77807 * 20 18 16 22 22 C 1.50716 * 107.97933 * 49.05776 * 21 20 18 23 23 C 1.33868 * 128.67742 * 163.59558 * 22 21 20 24 24 N 1.34425 * 107.79528 * 180.13586 * 23 22 21 25 25 C 1.30795 * 109.32220 * 359.97438 * 24 23 22 26 26 C 1.50702 * 125.72412 * 179.97438 * 25 24 23 27 27 N 1.34401 * 108.54817 * 0.21068 * 25 24 23 28 28 C 1.46477 * 128.44150 * 179.91681 * 27 25 24 29 29 H 1.09002 * 109.47102 * 299.99146 * 1 2 3 30 30 H 1.09000 * 109.47665 * 59.99864 * 1 2 3 31 31 H 1.09003 * 109.47232 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47097 * 60.00410 * 5 3 2 33 33 H 1.09002 * 109.47067 * 300.00232 * 5 3 2 34 34 H 1.08999 * 109.46857 * 55.02236 * 6 5 3 35 35 H 1.08998 * 109.47521 * 295.02390 * 6 5 3 36 36 H 0.97000 * 119.99689 * 184.91491 * 11 10 8 37 37 H 1.09008 * 109.49451 * 289.95979 * 20 18 16 38 38 H 1.09000 * 109.50199 * 50.02584 * 20 18 16 39 39 H 1.09001 * 110.30507 * 289.14551 * 21 20 18 40 40 H 1.08994 * 109.26415 * 168.37544 * 21 20 18 41 41 H 1.07994 * 126.10130 * 0.15671 * 23 22 21 42 42 H 1.09000 * 109.46711 * 90.02689 * 26 25 24 43 43 H 1.08999 * 109.47144 * 330.03091 * 26 25 24 44 44 H 1.08994 * 109.47084 * 210.02590 * 26 25 24 45 45 H 1.09003 * 109.59924 * 282.43501 * 28 27 25 46 46 H 1.09008 * 109.59912 * 42.74754 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4582 2.8201 0.1195 8 6 6.1354 1.8920 0.8675 9 1 5.6024 1.2790 1.5792 10 6 7.5076 1.7401 0.7100 11 7 8.3270 2.6613 1.1645 12 14 8.1872 0.2263 -0.1478 13 1 8.3000 0.4916 -1.6046 14 1 9.5289 -0.0939 0.4023 15 1 7.2731 -0.9223 0.0768 16 6 6.1337 3.8044 -0.5060 17 8 7.3465 3.7982 -0.5126 18 6 5.3821 4.9127 -1.1973 19 1 4.5633 5.2468 -0.5602 20 6 4.8176 4.3954 -2.5233 21 6 3.8457 5.4388 -3.0972 22 6 4.5307 6.7809 -3.0631 23 6 4.2045 7.9034 -3.7156 24 7 5.1009 8.8479 -3.3817 25 6 5.9692 8.3435 -2.5436 26 6 7.1334 9.0803 -1.9330 27 7 5.6519 7.0563 -2.3223 28 6 6.3321 6.0857 -1.4617 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.9556 0.7810 -0.8908 33 1 3.9564 0.7805 0.8891 34 1 3.5385 3.2569 0.8428 35 1 3.6859 3.2144 -0.9305 36 1 9.2791 2.5911 0.9924 37 1 5.6343 4.2262 -3.2251 38 1 4.2855 3.4597 -2.3518 39 1 2.9343 5.4754 -2.5005 40 1 3.6023 5.1757 -4.1266 41 1 3.3700 8.0281 -4.3896 42 1 6.8198 9.5437 -0.9976 43 1 7.4777 9.8509 -2.6227 44 1 7.9447 8.3792 -1.7371 45 1 7.2308 5.7220 -1.9598 46 1 6.6034 6.5603 -0.5186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:46 Heat of formation + Delta-G solvation = -43.649852 kcal Electronic energy + Delta-G solvation = -30127.959878 eV Core-core repulsion = 26019.613344 eV Total energy + Delta-G solvation = -4108.346534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.36663 -41.51262 -40.56961 -37.66290 -37.28059 -36.35482 -34.42361 -34.27857 -32.22980 -31.87925 -30.73939 -28.59138 -27.47752 -27.31979 -25.43756 -24.51910 -23.19525 -22.02109 -21.58825 -21.10096 -19.81726 -18.71109 -18.57405 -17.65315 -17.57997 -17.52414 -17.11131 -16.64977 -16.38328 -16.16702 -15.92221 -15.37913 -15.13846 -14.81680 -14.71553 -14.63484 -14.30456 -14.13599 -13.94687 -13.83389 -13.76915 -13.62460 -13.25748 -13.17900 -12.90580 -12.80287 -12.76671 -12.59991 -12.43754 -12.22140 -12.02894 -11.95015 -11.75629 -11.66378 -11.53202 -10.95443 -10.89381 -10.50273 -9.90958 -9.13209 -9.10428 -8.61978 -5.44355 1.08265 1.20196 1.40099 1.55244 1.57293 1.73081 1.77774 2.11846 2.30002 2.41015 2.80544 3.10131 3.43603 3.57739 3.67026 3.69942 3.83596 3.89068 4.06207 4.11565 4.22098 4.23275 4.32388 4.36627 4.39216 4.40644 4.50635 4.53979 4.58203 4.66083 4.73692 4.76198 4.85800 4.87567 4.92269 4.97712 5.00732 5.11208 5.19949 5.40898 5.48738 5.54341 5.83772 6.02426 6.24282 6.75316 6.90737 7.10378 7.29874 7.68318 8.36574 8.44005 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008923 B = 0.004659 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.370316 B = 6008.303272 C = 8589.607168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.474 3.526 4 O -0.534 6.534 5 C -0.111 4.111 6 C 0.119 3.881 7 N -0.434 5.434 8 C -0.476 4.476 9 H 0.103 0.897 10 C 0.128 3.872 11 N -0.709 5.709 12 Si 0.856 3.144 13 H -0.297 1.297 14 H -0.295 1.295 15 H -0.249 1.249 16 C 0.407 3.593 17 O -0.586 6.586 18 C -0.097 4.097 19 H 0.088 0.912 20 C -0.113 4.113 21 C -0.036 4.036 22 C -0.033 4.033 23 C -0.041 4.041 24 N -0.525 5.525 25 C 0.189 3.811 26 C -0.066 4.066 27 N -0.452 5.452 28 C 0.138 3.862 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.267 0.733 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.191 0.809 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.859 0.305 -5.335 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.318 3.682 4 O -0.424 6.424 5 C -0.149 4.149 6 C -0.004 4.004 7 N -0.152 5.152 8 C -0.593 4.593 9 H 0.121 0.879 10 C -0.098 4.098 11 N -0.333 5.333 12 Si 0.678 3.322 13 H -0.225 1.225 14 H -0.222 1.222 15 H -0.172 1.172 16 C 0.198 3.802 17 O -0.471 6.471 18 C -0.120 4.120 19 H 0.107 0.893 20 C -0.151 4.151 21 C -0.073 4.073 22 C -0.147 4.147 23 C -0.188 4.188 24 N -0.245 5.245 25 C -0.072 4.072 26 C -0.125 4.125 27 N -0.136 5.136 28 C 0.016 3.984 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.208 0.792 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.255 1.402 -5.344 12.538 hybrid contribution 0.629 -1.344 0.094 1.487 sum -10.627 0.058 -5.250 11.853 Atomic orbital electron populations 1.23555 0.74774 1.05622 1.02633 1.86523 1.25074 1.32795 1.83718 1.23831 0.92039 0.81225 0.71089 1.90636 1.67840 1.37012 1.46916 1.21489 0.86089 0.99367 1.07930 1.21399 0.81027 0.95315 1.02676 1.43512 1.04987 1.24519 1.42221 1.18549 0.90820 1.20667 1.29265 0.87939 1.25068 0.95731 0.95760 0.93214 1.70844 1.04814 1.34408 1.23221 0.87125 0.77765 0.86221 0.81108 1.22465 1.22243 1.17223 1.19880 0.87956 0.84661 0.87749 1.90620 1.14893 1.77945 1.63676 1.21311 0.97964 0.93973 0.98704 0.89346 1.21788 0.99334 0.99720 0.94247 1.20359 0.96820 0.86186 1.03982 1.21620 0.92531 0.99880 1.00684 1.22207 1.02178 0.89088 1.05339 1.70411 1.06141 1.32314 1.15661 1.23697 1.00876 0.82380 1.00274 1.20274 0.91242 0.99612 1.01325 1.45472 1.22727 1.10545 1.34808 1.21467 0.95077 0.87853 0.94052 0.92048 0.91608 0.85216 0.86301 0.86406 0.92948 0.88640 0.92179 0.92273 0.89008 0.88363 0.87018 0.79235 0.89142 0.88253 0.90458 0.90300 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.66 10.57 -51.44 -0.54 -9.21 16 3 C 0.47 12.95 7.96 71.24 0.57 13.52 16 4 O -0.53 -16.53 15.67 21.98 0.34 -16.18 16 5 C -0.11 -3.24 5.42 29.85 0.16 -3.08 16 6 C 0.12 4.01 4.61 86.38 0.40 4.41 16 7 N -0.43 -18.86 2.97 -635.53 -1.89 -20.74 16 8 C -0.48 -23.17 8.51 84.04 0.72 -22.45 16 9 H 0.10 4.83 6.60 -2.91 -0.02 4.81 16 10 C 0.13 6.61 3.64 84.93 0.31 6.92 16 11 N -0.71 -38.98 11.46 21.66 0.25 -38.73 16 12 Si 0.86 39.15 29.69 68.60 2.04 41.19 16 13 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 14 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 15 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 16 C 0.41 18.31 6.79 87.66 0.60 18.90 16 17 O -0.59 -31.32 11.81 -3.04 -0.04 -31.35 16 18 C -0.10 -3.37 1.69 -11.42 -0.02 -3.39 16 19 H 0.09 2.96 7.62 -2.39 -0.02 2.94 16 20 C -0.11 -3.24 4.81 30.87 0.15 -3.09 16 21 C -0.04 -0.83 6.31 30.09 0.19 -0.64 16 22 C -0.03 -0.95 6.57 40.73 0.27 -0.69 16 23 C -0.04 -1.21 11.84 83.30 0.99 -0.23 16 24 N -0.52 -17.42 11.27 -188.77 -2.13 -19.55 16 25 C 0.19 5.95 7.94 138.25 1.10 7.05 16 26 C -0.07 -1.58 10.24 71.24 0.73 -0.85 16 27 N -0.45 -14.48 3.13 -500.18 -1.57 -16.04 16 28 C 0.14 4.75 5.50 86.46 0.48 5.23 16 29 H 0.06 1.01 8.13 -2.39 -0.02 1.00 16 30 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 31 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.12 3.62 6.34 -2.39 -0.02 3.60 16 34 H 0.05 1.82 7.96 -2.39 -0.02 1.80 16 35 H 0.10 2.84 4.26 -2.39 -0.01 2.83 16 36 H 0.27 14.08 8.32 -92.71 -0.77 13.31 16 37 H 0.06 1.85 8.12 -2.38 -0.02 1.83 16 38 H 0.09 2.46 5.66 -2.39 -0.01 2.45 16 39 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 42 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 43 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.08 1.77 7.95 -2.39 -0.02 1.75 16 45 H 0.08 3.00 7.59 -2.39 -0.02 2.98 16 46 H 0.09 3.01 8.14 -2.38 -0.02 2.99 16 Total: -1.00 -69.03 372.02 5.29 -63.74 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 1.00 Total: 23.62 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 7.82 Total: 23.26 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -5.33 Total: -95.07 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.23 Total: -56.74 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.04 Total: 41.19 kcal Total: -69.03 5.29 -63.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.090 kcal (2) G-P(sol) polarization free energy of solvation -69.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds