Wall clock time and date at job start Tue Mar 31 2020 19:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99883 * 2 1 4 4 O 1.20829 * 120.00110 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00025 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47312 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47125 * 180.02562 * 6 5 3 8 8 C 1.37099 * 119.99370 * 273.43553 * 7 6 5 9 9 H 1.07993 * 120.00322 * 52.67247 * 8 7 6 10 10 C 1.38950 * 119.99987 * 232.66894 * 8 7 6 11 11 N 1.31412 * 120.00128 * 16.80715 * 10 8 7 12 12 Si 1.86801 * 120.00136 * 196.80593 * 10 8 7 13 13 H 1.48498 * 109.47423 * 90.00168 * 12 10 8 14 14 H 1.48506 * 109.47053 * 210.00330 * 12 10 8 15 15 H 1.48506 * 109.46823 * 329.99914 * 12 10 8 16 16 C 1.34769 * 120.00483 * 93.43932 * 7 6 5 17 17 O 1.21296 * 119.99944 * 5.11424 * 16 7 6 18 18 C 1.50700 * 120.00105 * 185.10762 * 16 7 6 19 19 H 1.08993 * 109.39283 * 308.80040 * 18 16 7 20 20 C 1.53176 * 109.57357 * 68.62346 * 18 16 7 21 21 C 1.53500 * 109.44948 * 189.82329 * 20 18 16 22 22 C 1.50711 * 108.05265 * 311.32729 * 21 20 18 23 23 C 1.33859 * 128.67420 * 195.85366 * 22 21 20 24 24 N 1.34425 * 107.79356 * 179.84933 * 23 22 21 25 25 C 1.30787 * 109.32484 * 0.02562 * 24 23 22 26 26 C 1.50701 * 125.72672 * 180.02562 * 25 24 23 27 27 N 1.34407 * 108.55131 * 0.03919 * 25 24 23 28 28 C 1.46470 * 128.44490 * 179.88367 * 27 25 24 29 29 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46936 * 299.98682 * 1 2 3 31 31 H 1.09000 * 109.47640 * 59.99443 * 1 2 3 32 32 H 1.08997 * 109.47265 * 59.99877 * 5 3 2 33 33 H 1.09007 * 109.47212 * 300.00427 * 5 3 2 34 34 H 1.08997 * 109.47661 * 59.99378 * 6 5 3 35 35 H 1.09007 * 109.46724 * 299.99984 * 6 5 3 36 36 H 0.97004 * 120.00134 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.38909 * 69.85567 * 20 18 16 38 38 H 1.08997 * 109.49241 * 309.85607 * 20 18 16 39 39 H 1.09000 * 109.74677 * 191.68137 * 21 20 18 40 40 H 1.09001 * 109.74231 * 70.96151 * 21 20 18 41 41 H 1.07995 * 126.10682 * 359.82742 * 23 22 21 42 42 H 1.09001 * 109.46897 * 269.97515 * 26 25 24 43 43 H 1.08998 * 109.46886 * 29.97323 * 26 25 24 44 44 H 1.08995 * 109.47275 * 149.97732 * 26 25 24 45 45 H 1.09001 * 109.60013 * 317.02943 * 28 27 25 46 46 H 1.08995 * 109.60106 * 77.34870 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8187 -0.0010 8 6 6.1523 2.7826 1.1836 9 1 5.9732 1.9842 1.8884 10 6 7.0812 3.7733 1.4774 11 7 7.0725 4.9024 0.8053 12 14 8.3426 3.5000 2.8280 13 1 9.5601 2.8771 2.2495 14 1 8.6984 4.8036 3.4440 15 1 7.7717 2.6023 3.8641 16 6 6.1315 2.9248 -1.1665 17 8 5.5204 3.0502 -2.2067 18 6 7.6380 2.8878 -1.1772 19 1 8.0229 3.6077 -0.4551 20 6 8.1195 1.4838 -0.7988 21 6 9.6372 1.5082 -0.5705 22 6 10.2740 2.2154 -1.7392 23 6 11.5591 2.2218 -2.1138 24 7 11.6621 2.9854 -3.2153 25 6 10.4812 3.4504 -3.5315 26 6 10.1733 4.3468 -4.7032 27 7 9.5885 2.9950 -2.6359 28 6 8.1472 3.2490 -2.5768 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5136 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 3.6107 3.2357 0.8905 35 1 3.6100 3.2367 -0.8894 36 1 7.7213 5.5939 1.0101 37 1 7.8842 0.7906 -1.6064 38 1 7.6193 1.1616 0.1145 39 1 10.0164 0.4883 -0.5060 40 1 9.8623 2.0444 0.3514 41 1 12.3688 1.7060 -1.6192 42 1 10.2666 5.3889 -4.3977 43 1 10.8744 4.1411 -5.5120 44 1 9.1563 4.1586 -5.0472 45 1 7.9531 4.3029 -2.7764 46 1 7.6371 2.6362 -3.3201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:51 Heat of formation + Delta-G solvation = -64.398830 kcal Electronic energy + Delta-G solvation = -30190.462316 eV Core-core repulsion = 26081.216039 eV Total energy + Delta-G solvation = -4109.246277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96813 -40.27695 -39.09616 -36.45699 -35.65673 -35.03005 -32.91851 -32.77351 -30.82744 -30.40569 -29.33401 -27.64876 -25.98795 -25.23176 -24.64264 -22.93663 -21.70838 -20.65999 -20.24289 -19.57206 -18.33134 -17.52374 -17.08532 -16.42227 -16.39004 -16.14495 -15.62652 -15.27173 -15.01938 -14.50773 -14.17256 -13.90420 -13.84665 -13.54910 -13.41570 -13.23938 -12.97407 -12.69722 -12.69113 -12.55298 -12.44435 -12.14185 -12.11068 -11.81386 -11.56471 -11.45275 -11.32018 -11.29645 -10.92436 -10.73852 -10.60985 -10.41867 -10.35422 -10.26866 -10.15744 -9.57711 -9.19665 -8.89088 -8.50535 -7.78955 -7.61296 -6.65709 -4.49398 2.43156 2.45497 2.84231 2.96449 3.07083 3.09949 3.20514 3.46759 3.78234 3.92685 4.51221 4.67327 4.78588 5.01951 5.04987 5.09317 5.15755 5.23600 5.31580 5.39804 5.44296 5.47499 5.51208 5.66098 5.67200 5.72685 5.79702 5.88730 5.94913 5.97264 6.01565 6.19922 6.25077 6.32048 6.37385 6.48375 6.54354 6.73419 6.75478 6.86071 6.96259 7.15646 7.18692 7.64376 7.66691 7.94552 8.37598 8.46009 8.67145 9.27841 9.72284 10.39080 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.003802 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.811462 B = 7362.819344 C = 8478.360562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.466 3.534 4 O -0.508 6.508 5 C -0.124 4.124 6 C 0.125 3.875 7 N -0.449 5.449 8 C -0.344 4.344 9 H 0.087 0.913 10 C 0.052 3.948 11 N -0.853 5.853 12 Si 0.902 3.098 13 H -0.264 1.264 14 H -0.281 1.281 15 H -0.265 1.265 16 C 0.529 3.471 17 O -0.606 6.606 18 C -0.114 4.114 19 H 0.135 0.865 20 C -0.109 4.109 21 C -0.049 4.049 22 C -0.014 4.014 23 C -0.038 4.038 24 N -0.501 5.501 25 C 0.197 3.803 26 C -0.065 4.065 27 N -0.441 5.441 28 C 0.121 3.879 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.275 0.725 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.164 0.836 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -7.401 -1.204 7.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.309 3.691 4 O -0.395 6.395 5 C -0.162 4.162 6 C 0.001 3.999 7 N -0.168 5.168 8 C -0.472 4.472 9 H 0.105 0.895 10 C -0.156 4.156 11 N -0.488 5.488 12 Si 0.727 3.273 13 H -0.189 1.189 14 H -0.207 1.207 15 H -0.189 1.189 16 C 0.318 3.682 17 O -0.491 6.491 18 C -0.135 4.135 19 H 0.152 0.848 20 C -0.147 4.147 21 C -0.087 4.087 22 C -0.130 4.130 23 C -0.186 4.186 24 N -0.221 5.221 25 C -0.065 4.065 26 C -0.123 4.123 27 N -0.123 5.123 28 C -0.001 4.001 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.182 0.818 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.049 -6.628 -2.152 7.047 hybrid contribution -0.352 0.026 1.314 1.361 sum -1.401 -6.602 -0.838 6.801 Atomic orbital electron populations 1.23197 0.77063 1.03227 1.02409 1.86535 1.22965 1.34177 1.84481 1.24025 0.92361 0.80973 0.71715 1.90655 1.67340 1.36293 1.45247 1.21863 0.86011 1.02716 1.05657 1.21128 0.84060 0.91428 1.03264 1.43152 1.02615 1.65725 1.05351 1.19266 1.20981 1.09549 0.97400 0.89531 1.25599 0.99191 0.93609 0.97158 1.69969 1.34026 1.03951 1.40827 0.86344 0.81216 0.78537 0.81176 1.18914 1.20672 1.18880 1.19858 0.88416 0.76931 0.82960 1.90531 1.70331 1.55434 1.32841 1.21644 0.94940 1.00580 0.96319 0.84804 1.21560 0.94380 0.95465 1.03272 1.20333 0.95069 0.99328 0.93980 1.21252 0.93052 1.01721 0.96961 1.21691 0.94745 1.04835 0.97307 1.70354 1.21984 1.14398 1.15331 1.22980 0.84812 1.02684 0.96064 1.20112 1.02469 0.96958 0.92774 1.45352 1.09109 1.36356 1.21511 1.21825 0.75640 1.02760 0.99874 0.88471 0.92073 0.92089 0.88009 0.87533 0.90577 0.90692 0.91509 0.92717 0.88358 0.89928 0.89854 0.81848 0.90510 0.89645 0.90919 0.89401 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.12 10.57 -39.26 -0.41 -5.54 16 3 C 0.47 7.63 7.96 36.01 0.29 7.91 16 4 O -0.51 -9.62 15.73 -18.75 -0.29 -9.91 16 5 C -0.12 -2.03 6.12 -27.89 -0.17 -2.20 16 6 C 0.13 2.55 4.75 -4.04 -0.02 2.54 16 7 N -0.45 -9.91 2.42 -114.82 -0.28 -10.19 16 8 C -0.34 -7.54 7.12 -14.93 -0.11 -7.64 16 9 H 0.09 1.80 7.89 -52.49 -0.41 1.38 16 10 C 0.05 1.16 3.53 -17.47 -0.06 1.09 16 11 N -0.85 -20.79 11.43 55.50 0.63 -20.15 16 12 Si 0.90 17.43 29.54 -169.99 -5.02 12.41 16 13 H -0.26 -4.88 5.97 56.52 0.34 -4.54 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 16 C 0.53 11.99 6.29 -10.99 -0.07 11.92 16 17 O -0.61 -14.91 15.29 5.54 0.08 -14.83 16 18 C -0.11 -2.30 1.64 -91.55 -0.15 -2.45 16 19 H 0.13 3.00 4.41 -51.93 -0.23 2.77 16 20 C -0.11 -1.90 5.11 -26.38 -0.13 -2.04 16 21 C -0.05 -0.79 6.32 -27.62 -0.17 -0.96 16 22 C -0.01 -0.25 6.57 -81.73 -0.54 -0.79 16 23 C -0.04 -0.67 11.84 -17.95 -0.21 -0.88 16 24 N -0.50 -9.32 11.27 -11.02 -0.12 -9.44 16 25 C 0.20 3.45 7.94 -155.75 -1.24 2.21 16 26 C -0.06 -0.86 10.24 36.01 0.37 -0.49 16 27 N -0.44 -8.06 3.13 -109.45 -0.34 -8.40 16 28 C 0.12 2.29 5.41 -3.93 -0.02 2.27 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 35 H 0.07 1.68 7.22 -51.93 -0.37 1.30 16 36 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 37 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 38 H 0.10 1.72 6.44 -51.93 -0.33 1.39 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.40 6.96 -51.93 -0.36 1.04 16 41 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.89 7.95 -51.93 -0.41 0.47 16 45 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 46 H 0.09 1.62 7.67 -51.93 -0.40 1.23 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -29.36 375.27 -8.06 -37.42 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.79 Total: 11.05 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -1.17 Total: 11.92 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.11 Total: -48.18 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.62 Total: -30.28 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.02 Total: 12.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.36 -8.06 -37.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.977 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds