Wall clock time and date at job start Tue Mar 31 2020 19:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99883 * 2 1 4 4 O 1.20829 * 120.00110 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00025 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47312 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47125 * 180.02562 * 6 5 3 8 8 C 1.37099 * 119.99370 * 273.43553 * 7 6 5 9 9 H 1.07993 * 120.00322 * 52.67247 * 8 7 6 10 10 C 1.38950 * 119.99987 * 232.66894 * 8 7 6 11 11 N 1.31412 * 120.00128 * 16.80715 * 10 8 7 12 12 Si 1.86801 * 120.00136 * 196.80593 * 10 8 7 13 13 H 1.48498 * 109.47423 * 90.00168 * 12 10 8 14 14 H 1.48506 * 109.47053 * 210.00330 * 12 10 8 15 15 H 1.48506 * 109.46823 * 329.99914 * 12 10 8 16 16 C 1.34769 * 120.00483 * 93.43932 * 7 6 5 17 17 O 1.21296 * 119.99944 * 5.11424 * 16 7 6 18 18 C 1.50700 * 120.00105 * 185.10762 * 16 7 6 19 19 H 1.08993 * 109.39283 * 308.80040 * 18 16 7 20 20 C 1.53176 * 109.57357 * 68.62346 * 18 16 7 21 21 C 1.53500 * 109.44948 * 189.82329 * 20 18 16 22 22 C 1.50711 * 108.05265 * 311.32729 * 21 20 18 23 23 C 1.33859 * 128.67420 * 195.85366 * 22 21 20 24 24 N 1.34425 * 107.79356 * 179.84933 * 23 22 21 25 25 C 1.30787 * 109.32484 * 0.02562 * 24 23 22 26 26 C 1.50701 * 125.72672 * 180.02562 * 25 24 23 27 27 N 1.34407 * 108.55131 * 0.03919 * 25 24 23 28 28 C 1.46470 * 128.44490 * 179.88367 * 27 25 24 29 29 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46936 * 299.98682 * 1 2 3 31 31 H 1.09000 * 109.47640 * 59.99443 * 1 2 3 32 32 H 1.08997 * 109.47265 * 59.99877 * 5 3 2 33 33 H 1.09007 * 109.47212 * 300.00427 * 5 3 2 34 34 H 1.08997 * 109.47661 * 59.99378 * 6 5 3 35 35 H 1.09007 * 109.46724 * 299.99984 * 6 5 3 36 36 H 0.97004 * 120.00134 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.38909 * 69.85567 * 20 18 16 38 38 H 1.08997 * 109.49241 * 309.85607 * 20 18 16 39 39 H 1.09000 * 109.74677 * 191.68137 * 21 20 18 40 40 H 1.09001 * 109.74231 * 70.96151 * 21 20 18 41 41 H 1.07995 * 126.10682 * 359.82742 * 23 22 21 42 42 H 1.09001 * 109.46897 * 269.97515 * 26 25 24 43 43 H 1.08998 * 109.46886 * 29.97323 * 26 25 24 44 44 H 1.08995 * 109.47275 * 149.97732 * 26 25 24 45 45 H 1.09001 * 109.60013 * 317.02943 * 28 27 25 46 46 H 1.08995 * 109.60106 * 77.34870 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8187 -0.0010 8 6 6.1523 2.7826 1.1836 9 1 5.9732 1.9842 1.8884 10 6 7.0812 3.7733 1.4774 11 7 7.0725 4.9024 0.8053 12 14 8.3426 3.5000 2.8280 13 1 9.5601 2.8771 2.2495 14 1 8.6984 4.8036 3.4440 15 1 7.7717 2.6023 3.8641 16 6 6.1315 2.9248 -1.1665 17 8 5.5204 3.0502 -2.2067 18 6 7.6380 2.8878 -1.1772 19 1 8.0229 3.6077 -0.4551 20 6 8.1195 1.4838 -0.7988 21 6 9.6372 1.5082 -0.5705 22 6 10.2740 2.2154 -1.7392 23 6 11.5591 2.2218 -2.1138 24 7 11.6621 2.9854 -3.2153 25 6 10.4812 3.4504 -3.5315 26 6 10.1733 4.3468 -4.7032 27 7 9.5885 2.9950 -2.6359 28 6 8.1472 3.2490 -2.5768 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5136 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 3.6107 3.2357 0.8905 35 1 3.6100 3.2367 -0.8894 36 1 7.7213 5.5939 1.0101 37 1 7.8842 0.7906 -1.6064 38 1 7.6193 1.1616 0.1145 39 1 10.0164 0.4883 -0.5060 40 1 9.8623 2.0444 0.3514 41 1 12.3688 1.7060 -1.6192 42 1 10.2666 5.3889 -4.3977 43 1 10.8744 4.1411 -5.5120 44 1 9.1563 4.1586 -5.0472 45 1 7.9531 4.3029 -2.7764 46 1 7.6371 2.6362 -3.3201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:50 Heat of formation + Delta-G solvation = -79.590273 kcal Electronic energy + Delta-G solvation = -30191.121067 eV Core-core repulsion = 26081.216039 eV Total energy + Delta-G solvation = -4109.905027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.32367 -41.57909 -40.75535 -37.72646 -37.11354 -36.77776 -34.40200 -34.24104 -32.32585 -31.78964 -30.67177 -28.69864 -27.30343 -26.91091 -26.11546 -24.36210 -23.11782 -22.02088 -21.60798 -21.19900 -19.77375 -18.90393 -18.64443 -17.70292 -17.63334 -17.55164 -17.15525 -16.78322 -16.60518 -16.09258 -15.65759 -15.30665 -15.10495 -14.87864 -14.75230 -14.54158 -14.42831 -14.19211 -13.91700 -13.84853 -13.72719 -13.46710 -13.29968 -13.20235 -13.02177 -12.92327 -12.83442 -12.74344 -12.42926 -12.15690 -11.99833 -11.82931 -11.79681 -11.62111 -11.61305 -10.96717 -10.80010 -10.41210 -10.25207 -9.36291 -9.10194 -8.38822 -6.27207 1.11240 1.12941 1.44120 1.49829 1.58899 1.66428 1.80652 2.09309 2.13532 2.31823 2.93700 2.97387 3.57622 3.61550 3.77481 3.84250 3.86011 3.99044 4.06577 4.17041 4.26730 4.32039 4.32875 4.35295 4.44295 4.54734 4.55307 4.61619 4.67376 4.68969 4.70895 4.87465 4.93879 4.95601 4.98130 5.02259 5.08351 5.32612 5.33712 5.37467 5.45598 5.53832 5.85945 5.93928 6.28840 6.62401 6.69437 6.94734 7.11938 7.52135 7.98412 8.66526 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.003802 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.811462 B = 7362.819344 C = 8478.360562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.540 6.540 5 C -0.111 4.111 6 C 0.126 3.874 7 N -0.454 5.454 8 C -0.346 4.346 9 H 0.103 0.897 10 C 0.020 3.980 11 N -0.891 5.891 12 Si 0.953 3.047 13 H -0.248 1.248 14 H -0.297 1.297 15 H -0.251 1.251 16 C 0.517 3.483 17 O -0.635 6.635 18 C -0.109 4.109 19 H 0.117 0.883 20 C -0.102 4.102 21 C -0.042 4.042 22 C -0.032 4.032 23 C -0.044 4.044 24 N -0.522 5.522 25 C 0.187 3.813 26 C -0.065 4.065 27 N -0.450 5.450 28 C 0.132 3.868 29 H 0.136 0.864 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.271 0.729 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.190 0.810 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -9.610 -0.393 9.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.430 6.430 5 C -0.149 4.149 6 C 0.002 3.998 7 N -0.172 5.172 8 C -0.473 4.473 9 H 0.120 0.880 10 C -0.183 4.183 11 N -0.527 5.527 12 Si 0.776 3.224 13 H -0.172 1.172 14 H -0.224 1.224 15 H -0.174 1.174 16 C 0.308 3.692 17 O -0.523 6.523 18 C -0.131 4.131 19 H 0.134 0.866 20 C -0.140 4.140 21 C -0.079 4.079 22 C -0.146 4.146 23 C -0.190 4.190 24 N -0.243 5.243 25 C -0.075 4.075 26 C -0.123 4.123 27 N -0.132 5.132 28 C 0.010 3.990 29 H 0.154 0.846 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.096 0.904 41 H 0.207 0.793 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.303 -8.887 -1.322 8.990 hybrid contribution -0.690 0.728 1.045 1.449 sum -0.994 -8.159 -0.276 8.224 Atomic orbital electron populations 1.23572 0.74786 1.05821 1.02461 1.86508 1.25096 1.32427 1.83757 1.23867 0.92209 0.81223 0.70960 1.90650 1.67963 1.37504 1.46925 1.21619 0.86575 0.99785 1.06928 1.21050 0.83422 0.94008 1.01283 1.43338 1.03186 1.65200 1.05509 1.19618 1.20664 1.09776 0.97278 0.87970 1.26251 1.00379 0.93006 0.98705 1.70088 1.34896 1.05009 1.42716 0.85553 0.79807 0.77873 0.79119 1.17206 1.22380 1.17446 1.20333 0.89560 0.76629 0.82696 1.90500 1.71161 1.56884 1.33766 1.21548 0.93112 1.01917 0.96503 0.86612 1.21524 0.95571 0.93564 1.03375 1.20367 0.93618 1.01005 0.92956 1.21634 0.93405 1.02081 0.97503 1.22176 0.95393 1.04493 0.96964 1.70389 1.22431 1.15286 1.16188 1.23743 0.84510 1.02579 0.96628 1.20270 1.03396 0.96671 0.91944 1.45414 1.08700 1.36929 1.22201 1.21577 0.76364 1.01945 0.99158 0.84609 0.91895 0.92279 0.87506 0.85329 0.91638 0.93546 0.91959 0.92181 0.88242 0.86542 0.90374 0.79287 0.89604 0.87961 0.90162 0.90573 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -9.50 10.57 -51.41 -0.54 -10.04 16 3 C 0.47 15.17 7.96 71.24 0.57 15.74 16 4 O -0.54 -20.62 15.73 21.96 0.35 -20.28 16 5 C -0.11 -3.56 6.12 29.85 0.18 -3.38 16 6 C 0.13 5.25 4.75 86.38 0.41 5.66 16 7 N -0.45 -20.16 2.42 -635.55 -1.54 -21.70 16 8 C -0.35 -14.90 7.12 84.04 0.60 -14.30 16 9 H 0.10 4.03 7.89 -2.91 -0.02 4.01 16 10 C 0.02 0.90 3.53 84.93 0.30 1.20 16 11 N -0.89 -44.18 11.43 21.66 0.25 -43.93 16 12 Si 0.95 34.64 29.54 68.60 2.03 36.67 16 13 H -0.25 -8.32 5.97 99.48 0.59 -7.72 16 14 H -0.30 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 16 C 0.52 23.84 6.29 87.66 0.55 24.40 16 17 O -0.64 -32.20 15.29 -3.08 -0.05 -32.25 16 18 C -0.11 -4.43 1.64 -11.40 -0.02 -4.45 16 19 H 0.12 5.23 4.41 -2.39 -0.01 5.22 16 20 C -0.10 -3.42 5.11 30.82 0.16 -3.27 16 21 C -0.04 -1.23 6.32 30.02 0.19 -1.04 16 22 C -0.03 -1.07 6.57 40.73 0.27 -0.80 16 23 C -0.04 -1.43 11.84 83.30 0.99 -0.45 16 24 N -0.52 -18.75 11.27 -188.78 -2.13 -20.88 16 25 C 0.19 6.40 7.94 138.25 1.10 7.50 16 26 C -0.06 -1.65 10.24 71.24 0.73 -0.92 16 27 N -0.45 -16.13 3.13 -500.18 -1.57 -17.70 16 28 C 0.13 5.04 5.41 86.47 0.47 5.51 16 29 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 31 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 32 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.13 3.58 8.14 -2.38 -0.02 3.56 16 34 H 0.07 2.81 8.03 -2.39 -0.02 2.79 16 35 H 0.05 2.17 7.22 -2.38 -0.02 2.16 16 36 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 37 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 38 H 0.10 3.29 6.44 -2.39 -0.02 3.28 16 39 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.08 2.41 6.96 -2.39 -0.02 2.39 16 41 H 0.19 4.97 8.06 -2.91 -0.02 4.94 16 42 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.08 1.90 7.95 -2.39 -0.02 1.88 16 45 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.08 3.21 7.67 -2.39 -0.02 3.19 16 Total: -1.00 -64.12 375.27 5.36 -58.76 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: 0.88 Total: 38.25 kcal Atomic # 6 Polarization: 25.42 SS G_CDS: 7.68 Total: 33.10 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -4.99 Total: -104.21 kcal Atomic # 8 Polarization: -62.32 SS G_CDS: -0.24 Total: -62.57 kcal Atomic # 14 Polarization: 34.64 SS G_CDS: 2.03 Total: 36.67 kcal Total: -64.12 5.36 -58.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.828 kcal (2) G-P(sol) polarization free energy of solvation -64.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds