Wall clock time and date at job start Tue Mar 31 2020 18:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33686 * 126.28047 * 2 1 4 4 C 1.30614 * 108.99928 * 179.97438 * 3 2 1 5 5 O 1.33666 * 109.15438 * 359.72659 * 4 3 2 6 6 C 1.35339 * 107.68314 * 0.43506 * 5 4 3 7 7 C 1.46719 * 126.64711 * 179.84120 * 6 5 4 8 8 O 1.21680 * 120.00363 * 187.28651 * 7 6 5 9 9 N 1.34783 * 119.99495 * 7.00727 * 7 6 5 10 10 C 1.47145 * 120.98646 * 357.46648 * 9 7 6 11 11 C 1.53302 * 108.37071 * 129.40725 * 10 9 7 12 12 O 1.42963 * 109.22800 * 52.35112 * 11 10 9 13 13 C 1.42901 * 114.20985 * 297.50684 * 12 11 10 14 14 C 1.52983 * 109.55935 * 302.52203 * 13 12 11 15 15 C 1.53197 * 109.35040 * 300.95374 * 14 13 12 16 16 N 1.46929 * 108.77698 * 305.43101 * 15 14 13 17 17 C 1.36931 * 120.64351 * 233.65107 * 16 15 14 18 18 H 1.08004 * 120.00362 * 154.53017 * 17 16 15 19 19 C 1.38815 * 119.99823 * 334.52501 * 17 16 15 20 20 N 1.31619 * 120.00053 * 330.85121 * 19 17 16 21 21 Si 1.86797 * 119.99798 * 150.84805 * 19 17 16 22 22 H 1.48500 * 109.47453 * 94.99949 * 21 19 17 23 23 H 1.48508 * 109.46778 * 214.99171 * 21 19 17 24 24 H 1.48497 * 109.47215 * 334.99262 * 21 19 17 25 25 C 1.46930 * 118.71783 * 53.66804 * 16 15 14 26 26 C 1.52994 * 109.54874 * 182.21839 * 13 12 11 27 27 C 1.47158 * 120.98248 * 177.18706 * 9 7 6 28 28 H 1.08999 * 109.47055 * 270.03271 * 1 2 3 29 29 H 1.08998 * 109.46457 * 30.02851 * 1 2 3 30 30 H 1.08994 * 109.47363 * 150.02627 * 1 2 3 31 31 H 1.07998 * 125.42256 * 180.02562 * 4 3 2 32 32 H 1.09010 * 109.68559 * 249.12226 * 10 9 7 33 33 H 1.08992 * 109.68606 * 9.68470 * 10 9 7 34 34 H 1.09003 * 109.51246 * 172.27875 * 11 10 9 35 35 H 1.08997 * 109.51239 * 292.37460 * 11 10 9 36 36 H 1.08996 * 109.49130 * 60.92171 * 14 13 12 37 37 H 1.09000 * 109.48793 * 180.99293 * 14 13 12 38 38 H 1.08996 * 109.58672 * 185.64373 * 15 14 13 39 39 H 1.09000 * 109.70286 * 65.28632 * 15 14 13 40 40 H 0.97000 * 120.00117 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.58781 * 186.53969 * 25 16 15 42 42 H 1.09002 * 109.70556 * 66.18289 * 25 16 15 43 43 H 1.08996 * 109.49276 * 179.01252 * 26 13 12 44 44 H 1.09003 * 109.49484 * 299.06187 * 26 13 12 45 45 H 1.08994 * 109.67511 * 350.20758 * 27 9 7 46 46 H 1.09005 * 109.67205 * 110.74514 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0777 0.0000 4 6 3.5453 0.6897 0.0006 5 8 3.5889 -0.6462 0.0069 6 6 2.3137 -1.0993 0.0007 7 6 1.8825 -2.5017 0.0010 8 8 0.7054 -2.7764 -0.1387 9 7 2.7911 -3.4860 0.1505 10 6 4.2266 -3.1816 0.2595 11 6 4.7821 -3.9068 1.4906 12 8 4.4309 -5.2908 1.4201 13 6 3.0240 -5.5401 1.4406 14 6 2.4154 -4.9371 2.7081 15 6 3.0828 -5.5607 3.9380 16 7 2.9669 -7.0227 3.8487 17 6 2.4265 -7.7442 4.8794 18 1 1.9682 -8.7028 4.6856 19 6 2.4678 -7.2436 6.1735 20 7 3.4470 -6.4435 6.5387 21 14 1.1335 -7.7053 7.3965 22 1 1.5857 -8.8632 8.2089 23 1 0.8597 -6.5509 8.2897 24 1 -0.1057 -8.0688 6.6634 25 6 3.4424 -7.6956 2.6322 26 6 2.7710 -7.0488 1.4165 27 6 2.3763 -4.8964 0.2155 28 1 -0.3633 0.0006 1.0277 29 1 -0.3632 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5134 31 1 4.4044 1.3441 0.0011 32 1 4.7444 -3.5278 -0.6352 33 1 4.3665 -2.1066 0.3724 34 1 5.8674 -3.8073 1.5129 35 1 4.3578 -3.4683 2.3937 36 1 2.5788 -3.8594 2.7127 37 1 1.3453 -5.1432 2.7312 38 1 2.5849 -5.2092 4.8415 39 1 4.1353 -5.2787 3.9675 40 1 3.4760 -6.0940 7.4431 41 1 3.1818 -8.7532 2.6740 42 1 4.5242 -7.5887 2.5520 43 1 1.6982 -7.2383 1.4499 44 1 3.1869 -7.4728 0.5025 45 1 1.2914 -4.9562 0.3013 46 1 2.7031 -5.4169 -0.6847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949061011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:06 Heat of formation + Delta-G solvation = -7.748219 kcal Electronic energy + Delta-G solvation = -30837.633270 eV Core-core repulsion = 26730.843548 eV Total energy + Delta-G solvation = -4106.789722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.79255 -40.63648 -38.82935 -36.44152 -35.68272 -34.53900 -33.15674 -31.93419 -30.94916 -30.16040 -28.94363 -28.42524 -26.71551 -24.50599 -23.98539 -23.24369 -22.30308 -22.10774 -20.98628 -19.87763 -18.99388 -17.74186 -17.32560 -17.09789 -16.90478 -16.30660 -15.63653 -15.30725 -15.04871 -14.79381 -14.68482 -14.42618 -14.14540 -13.67392 -13.58803 -13.44321 -13.39851 -13.23673 -13.03361 -12.48187 -12.38259 -11.91325 -11.75055 -11.59637 -11.49890 -11.40693 -11.19804 -11.04700 -10.70350 -10.59579 -10.45703 -10.35779 -10.31468 -10.06639 -9.83198 -9.59328 -9.41687 -9.23870 -8.50583 -8.38764 -6.72305 -5.82276 -3.12701 0.54279 2.08429 2.13541 2.72428 2.88458 3.38446 3.47380 3.51481 3.72165 3.94870 4.23984 4.44306 4.53212 4.72274 4.83368 5.01749 5.06584 5.08162 5.17713 5.26989 5.32411 5.41402 5.45905 5.52866 5.60612 5.62996 5.63956 5.76120 5.80961 5.89738 6.00089 6.05062 6.18282 6.26244 6.33034 6.39259 6.49669 6.58547 6.79081 6.99769 7.04342 7.25910 7.26789 7.45467 7.55808 7.78056 7.84067 8.41424 9.19195 9.86812 10.44530 11.26444 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.003452 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.601161 B = 8110.165586 C = 8650.473702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.081 3.919 3 N -0.493 5.493 4 C 0.194 3.806 5 O -0.186 6.186 6 C -0.111 4.111 7 C 0.608 3.392 8 O -0.514 6.514 9 N -0.597 5.597 10 C 0.059 3.941 11 C 0.046 3.954 12 O -0.357 6.357 13 C 0.116 3.884 14 C -0.161 4.161 15 C 0.181 3.819 16 N -0.589 5.589 17 C -0.260 4.260 18 H 0.067 0.933 19 C 0.007 3.993 20 N -0.889 5.889 21 Si 0.887 3.113 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.151 3.849 26 C -0.117 4.117 27 C 0.091 3.909 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.255 0.745 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.023 0.977 40 H 0.252 0.748 41 H 0.054 0.946 42 H 0.027 0.973 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 12.649 -15.978 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 N -0.222 5.222 4 C -0.031 4.031 5 O -0.073 6.073 6 C -0.165 4.165 7 C 0.395 3.605 8 O -0.392 6.392 9 N -0.329 5.329 10 C -0.063 4.063 11 C -0.032 4.032 12 O -0.276 6.276 13 C 0.076 3.924 14 C -0.200 4.200 15 C 0.055 3.945 16 N -0.312 5.312 17 C -0.389 4.389 18 H 0.084 0.916 19 C -0.192 4.192 20 N -0.532 5.532 21 Si 0.716 3.284 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.025 3.975 26 C -0.157 4.157 27 C -0.031 4.031 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.271 0.729 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.120 0.880 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.443 12.978 -15.894 20.571 hybrid contribution -0.215 -0.265 0.753 0.827 sum 1.228 12.713 -15.141 19.809 Atomic orbital electron populations 1.20441 0.85273 1.04538 1.03934 1.22074 0.98424 0.86274 0.97437 1.70364 1.01346 1.31414 1.19028 1.28467 0.97646 0.80205 0.96751 1.84625 1.29357 1.23803 1.69540 1.22927 0.81344 0.96124 1.16137 1.16441 0.85372 0.81251 0.77407 1.90847 1.16022 1.81440 1.50894 1.47977 1.07147 1.06904 1.70882 1.23005 0.80198 1.02616 1.00514 1.22894 1.00663 0.83545 0.96093 1.88029 1.22737 1.22628 1.94186 1.21674 0.81071 0.96624 0.93001 1.22695 1.01278 0.98627 0.97394 1.20548 0.96935 0.83334 0.93703 1.44069 1.71023 1.01386 1.14709 1.19109 1.29944 1.03963 0.85842 0.91552 1.24858 0.97459 1.00410 0.96509 1.70215 1.28151 1.36862 1.17977 0.86527 0.83148 0.77510 0.81207 1.21495 1.21594 1.20356 1.20782 0.95834 0.95123 0.85776 1.22002 1.01738 0.91447 1.00494 1.22495 1.02287 0.78858 0.99479 0.89867 0.90410 0.88400 0.72904 0.90292 0.87251 0.87889 0.91972 0.93296 0.91454 0.90762 0.95914 0.93773 0.92731 0.95482 0.90655 0.92068 0.87986 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 9.96 36.01 0.36 -0.56 16 2 C 0.08 1.00 7.16 -82.46 -0.59 0.41 16 3 N -0.49 -5.49 11.26 -10.88 -0.12 -5.61 16 4 C 0.19 1.53 13.21 52.24 0.69 2.22 16 5 O -0.19 -1.85 7.31 4.43 0.03 -1.82 16 6 C -0.11 -1.40 6.88 -36.84 -0.25 -1.65 16 7 C 0.61 8.76 7.68 -12.83 -0.10 8.66 16 8 O -0.51 -8.42 14.26 5.21 0.07 -8.35 16 9 N -0.60 -8.12 2.53 -174.10 -0.44 -8.56 16 10 C 0.06 0.67 6.48 -3.53 -0.02 0.65 16 11 C 0.05 0.61 6.60 37.31 0.25 0.86 16 12 O -0.36 -5.94 9.01 -35.23 -0.32 -6.26 16 13 C 0.12 1.93 0.68 -90.73 -0.06 1.87 16 14 C -0.16 -3.08 4.31 -26.64 -0.11 -3.19 16 15 C 0.18 4.29 5.20 -3.71 -0.02 4.27 16 16 N -0.59 -14.72 3.00 -172.31 -0.52 -15.23 16 17 C -0.26 -7.14 9.51 -15.06 -0.14 -7.29 16 18 H 0.07 1.80 7.97 -52.48 -0.42 1.38 16 19 C 0.01 0.20 4.58 -17.43 -0.08 0.12 16 20 N -0.89 -25.97 11.86 55.49 0.66 -25.32 16 21 Si 0.89 21.65 29.64 -169.99 -5.04 16.61 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.15 3.17 6.28 -3.71 -0.02 3.14 16 26 C -0.12 -1.98 5.10 -26.63 -0.14 -2.12 16 27 C 0.09 1.30 5.25 -3.79 -0.02 1.28 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 1.14 6.34 -51.93 -0.33 0.81 16 31 H 0.26 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.11 1.11 3.98 -54.17 -0.22 0.89 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.92 6.29 -51.93 -0.33 0.60 16 36 H 0.05 0.90 6.16 -51.93 -0.32 0.58 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.07 1.98 6.26 -51.93 -0.33 1.66 16 39 H 0.02 0.57 7.83 -51.93 -0.41 0.17 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.05 1.11 7.92 -51.93 -0.41 0.70 16 42 H 0.03 0.60 7.83 -51.93 -0.41 0.19 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.10 1.54 7.09 -51.93 -0.37 1.17 16 46 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -33.44 358.22 -7.01 -40.45 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.47 Total: 0.01 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -0.27 Total: 8.67 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.42 Total: -54.72 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.21 Total: -16.42 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.04 Total: 16.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.44 -7.01 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949061011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.700 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds