Wall clock time and date at job start Tue Mar 31 2020 18:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33686 * 126.28047 * 2 1 4 4 C 1.30614 * 108.99928 * 179.97438 * 3 2 1 5 5 O 1.33666 * 109.15438 * 359.72659 * 4 3 2 6 6 C 1.35339 * 107.68314 * 0.43506 * 5 4 3 7 7 C 1.46719 * 126.64711 * 179.84120 * 6 5 4 8 8 O 1.21680 * 120.00363 * 187.28651 * 7 6 5 9 9 N 1.34783 * 119.99495 * 7.00727 * 7 6 5 10 10 C 1.47145 * 120.98646 * 357.46648 * 9 7 6 11 11 C 1.53302 * 108.37071 * 129.40725 * 10 9 7 12 12 O 1.42963 * 109.22800 * 52.35112 * 11 10 9 13 13 C 1.42901 * 114.20985 * 297.50684 * 12 11 10 14 14 C 1.52983 * 109.55935 * 302.52203 * 13 12 11 15 15 C 1.53197 * 109.35040 * 300.95374 * 14 13 12 16 16 N 1.46929 * 108.77698 * 305.43101 * 15 14 13 17 17 C 1.36931 * 120.64351 * 233.65107 * 16 15 14 18 18 H 1.08004 * 120.00362 * 154.53017 * 17 16 15 19 19 C 1.38815 * 119.99823 * 334.52501 * 17 16 15 20 20 N 1.31619 * 120.00053 * 330.85121 * 19 17 16 21 21 Si 1.86797 * 119.99798 * 150.84805 * 19 17 16 22 22 H 1.48500 * 109.47453 * 94.99949 * 21 19 17 23 23 H 1.48508 * 109.46778 * 214.99171 * 21 19 17 24 24 H 1.48497 * 109.47215 * 334.99262 * 21 19 17 25 25 C 1.46930 * 118.71783 * 53.66804 * 16 15 14 26 26 C 1.52994 * 109.54874 * 182.21839 * 13 12 11 27 27 C 1.47158 * 120.98248 * 177.18706 * 9 7 6 28 28 H 1.08999 * 109.47055 * 270.03271 * 1 2 3 29 29 H 1.08998 * 109.46457 * 30.02851 * 1 2 3 30 30 H 1.08994 * 109.47363 * 150.02627 * 1 2 3 31 31 H 1.07998 * 125.42256 * 180.02562 * 4 3 2 32 32 H 1.09010 * 109.68559 * 249.12226 * 10 9 7 33 33 H 1.08992 * 109.68606 * 9.68470 * 10 9 7 34 34 H 1.09003 * 109.51246 * 172.27875 * 11 10 9 35 35 H 1.08997 * 109.51239 * 292.37460 * 11 10 9 36 36 H 1.08996 * 109.49130 * 60.92171 * 14 13 12 37 37 H 1.09000 * 109.48793 * 180.99293 * 14 13 12 38 38 H 1.08996 * 109.58672 * 185.64373 * 15 14 13 39 39 H 1.09000 * 109.70286 * 65.28632 * 15 14 13 40 40 H 0.97000 * 120.00117 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.58781 * 186.53969 * 25 16 15 42 42 H 1.09002 * 109.70556 * 66.18289 * 25 16 15 43 43 H 1.08996 * 109.49276 * 179.01252 * 26 13 12 44 44 H 1.09003 * 109.49484 * 299.06187 * 26 13 12 45 45 H 1.08994 * 109.67511 * 350.20758 * 27 9 7 46 46 H 1.09005 * 109.67205 * 110.74514 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0777 0.0000 4 6 3.5453 0.6897 0.0006 5 8 3.5889 -0.6462 0.0069 6 6 2.3137 -1.0993 0.0007 7 6 1.8825 -2.5017 0.0010 8 8 0.7054 -2.7764 -0.1387 9 7 2.7911 -3.4860 0.1505 10 6 4.2266 -3.1816 0.2595 11 6 4.7821 -3.9068 1.4906 12 8 4.4309 -5.2908 1.4201 13 6 3.0240 -5.5401 1.4406 14 6 2.4154 -4.9371 2.7081 15 6 3.0828 -5.5607 3.9380 16 7 2.9669 -7.0227 3.8487 17 6 2.4265 -7.7442 4.8794 18 1 1.9682 -8.7028 4.6856 19 6 2.4678 -7.2436 6.1735 20 7 3.4470 -6.4435 6.5387 21 14 1.1335 -7.7053 7.3965 22 1 1.5857 -8.8632 8.2089 23 1 0.8597 -6.5509 8.2897 24 1 -0.1057 -8.0688 6.6634 25 6 3.4424 -7.6956 2.6322 26 6 2.7710 -7.0488 1.4165 27 6 2.3763 -4.8964 0.2155 28 1 -0.3633 0.0006 1.0277 29 1 -0.3632 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5134 31 1 4.4044 1.3441 0.0011 32 1 4.7444 -3.5278 -0.6352 33 1 4.3665 -2.1066 0.3724 34 1 5.8674 -3.8073 1.5129 35 1 4.3578 -3.4683 2.3937 36 1 2.5788 -3.8594 2.7127 37 1 1.3453 -5.1432 2.7312 38 1 2.5849 -5.2092 4.8415 39 1 4.1353 -5.2787 3.9675 40 1 3.4760 -6.0940 7.4431 41 1 3.1818 -8.7532 2.6740 42 1 4.5242 -7.5887 2.5520 43 1 1.6982 -7.2383 1.4499 44 1 3.1869 -7.4728 0.5025 45 1 1.2914 -4.9562 0.3013 46 1 2.7031 -5.4169 -0.6847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949061011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:05 Heat of formation + Delta-G solvation = -32.257566 kcal Electronic energy + Delta-G solvation = -30838.696075 eV Core-core repulsion = 26730.843548 eV Total energy + Delta-G solvation = -4107.852527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.57486 -41.82393 -40.04589 -37.92039 -36.66941 -35.64858 -34.79154 -33.02578 -32.46457 -31.83575 -30.14134 -29.56887 -27.97295 -26.12249 -24.95887 -24.47488 -23.88412 -23.14243 -22.24879 -21.02154 -20.41765 -18.91664 -18.65291 -18.14413 -17.87436 -17.41092 -16.97016 -16.67433 -16.41832 -16.08907 -16.03187 -15.56879 -15.31832 -15.28030 -15.10324 -14.86776 -14.54576 -14.29244 -14.14353 -13.86868 -13.33339 -13.29200 -13.18591 -13.08634 -13.03616 -12.83586 -12.55309 -12.33316 -12.20827 -12.10269 -12.06372 -11.81253 -11.76697 -11.45158 -11.42555 -11.08269 -10.89733 -10.48715 -10.14521 -9.61710 -8.76010 -7.93697 -5.26910 -0.30328 1.23726 1.35907 1.42757 1.46659 1.56935 1.77094 1.90877 2.50257 2.76199 3.09868 3.18465 3.32447 3.57068 3.62077 3.68255 3.81007 3.87198 3.91133 4.09775 4.18459 4.30913 4.40328 4.41644 4.50862 4.59401 4.62711 4.63288 4.66166 4.72313 4.79843 4.85892 4.86719 4.93158 5.04538 5.09082 5.11028 5.20709 5.28773 5.35135 5.39062 5.61066 5.67218 6.00487 6.25491 6.33695 6.46744 6.74502 7.10543 7.84841 8.38285 9.13322 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.003452 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.601161 B = 8110.165586 C = 8650.473702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.077 3.923 3 N -0.524 5.524 4 C 0.226 3.774 5 O -0.185 6.185 6 C -0.136 4.136 7 C 0.605 3.395 8 O -0.544 6.544 9 N -0.601 5.601 10 C 0.067 3.933 11 C 0.041 3.959 12 O -0.374 6.374 13 C 0.123 3.877 14 C -0.145 4.145 15 C 0.194 3.806 16 N -0.607 5.607 17 C -0.270 4.270 18 H 0.068 0.932 19 C -0.044 4.044 20 N -0.924 5.924 21 Si 0.952 3.048 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.271 1.271 25 C 0.148 3.852 26 C -0.109 4.109 27 C 0.099 3.901 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.310 0.690 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.000 1.000 40 H 0.249 0.751 41 H 0.057 0.943 42 H 0.016 0.984 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 13.649 -17.913 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 N -0.253 5.253 4 C 0.002 3.998 5 O -0.073 6.073 6 C -0.191 4.191 7 C 0.393 3.607 8 O -0.424 6.424 9 N -0.332 5.332 10 C -0.055 4.055 11 C -0.036 4.036 12 O -0.293 6.293 13 C 0.082 3.918 14 C -0.184 4.184 15 C 0.068 3.932 16 N -0.330 5.330 17 C -0.400 4.400 18 H 0.086 0.914 19 C -0.240 4.240 20 N -0.569 5.569 21 Si 0.780 3.220 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.196 1.196 25 C 0.023 3.977 26 C -0.148 4.148 27 C -0.023 4.023 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.324 0.676 32 H 0.119 0.881 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.117 13.974 -17.858 22.774 hybrid contribution -0.290 -0.489 1.356 1.470 sum 1.827 13.485 -16.503 21.390 Atomic orbital electron populations 1.20433 0.85082 1.04653 1.03955 1.22313 0.99025 0.86737 0.96576 1.70406 1.02599 1.31223 1.21060 1.29746 0.98209 0.79655 0.92157 1.84577 1.28036 1.24828 1.69811 1.22531 0.82438 0.95301 1.18809 1.16659 0.85081 0.82069 0.76862 1.90822 1.17178 1.82148 1.52287 1.48063 1.08038 1.06453 1.70654 1.23084 0.78830 1.03354 1.00195 1.23096 1.02215 0.82061 0.96232 1.88000 1.22300 1.24731 1.94247 1.21524 0.81439 0.96369 0.92435 1.22459 1.00186 0.98747 0.97048 1.20257 0.95437 0.83295 0.94214 1.44344 1.71380 1.01872 1.15434 1.19458 1.29601 1.04211 0.86721 0.91404 1.25590 0.99100 1.01063 0.98260 1.70323 1.29804 1.38615 1.18200 0.85512 0.80641 0.76957 0.78927 1.21045 1.22004 1.19551 1.20908 0.95483 0.95480 0.85844 1.21896 1.01662 0.91551 0.99688 1.22303 1.01487 0.79578 0.98938 0.89848 0.88931 0.89579 0.67552 0.88106 0.85768 0.85354 0.94221 0.92787 0.92517 0.94602 0.98155 0.94165 0.92498 0.96598 0.90368 0.88677 0.88942 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.80 9.96 71.24 0.71 -1.09 16 2 C 0.08 1.80 7.16 41.84 0.30 2.10 16 3 N -0.52 -10.45 11.26 -303.13 -3.41 -13.87 16 4 C 0.23 2.74 13.21 130.42 1.72 4.46 16 5 O -0.18 -3.13 7.31 -7.05 -0.05 -3.18 16 6 C -0.14 -3.25 6.88 24.05 0.17 -3.08 16 7 C 0.60 16.93 7.68 86.46 0.66 17.60 16 8 O -0.54 -17.87 14.26 -4.28 -0.06 -17.94 16 9 N -0.60 -15.34 2.53 -822.95 -2.08 -17.43 16 10 C 0.07 1.34 6.48 86.36 0.56 1.90 16 11 C 0.04 1.03 6.60 72.08 0.48 1.51 16 12 O -0.37 -11.93 9.01 -148.98 -1.34 -13.27 16 13 C 0.12 3.93 0.68 -10.87 -0.01 3.92 16 14 C -0.15 -5.66 4.31 30.65 0.13 -5.53 16 15 C 0.19 9.56 5.20 86.36 0.45 10.01 16 16 N -0.61 -30.99 3.00 -699.06 -2.09 -33.09 16 17 C -0.27 -15.15 9.51 84.04 0.80 -14.35 16 18 H 0.07 3.70 7.97 -2.91 -0.02 3.68 16 19 C -0.04 -2.49 4.58 84.86 0.39 -2.10 16 20 N -0.92 -55.86 11.86 21.65 0.26 -55.60 16 21 Si 0.95 45.49 29.64 68.60 2.03 47.52 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 25 C 0.15 6.18 6.28 86.36 0.54 6.72 16 26 C -0.11 -3.52 5.10 30.66 0.16 -3.36 16 27 C 0.10 2.66 5.25 86.19 0.45 3.12 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 2.04 6.34 -2.39 -0.02 2.03 16 31 H 0.31 -0.34 8.06 -2.91 -0.02 -0.37 16 32 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.13 2.15 3.98 -37.87 -0.15 2.00 16 34 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.04 1.17 6.29 -2.39 -0.02 1.15 16 36 H 0.05 2.02 6.16 -2.39 -0.01 2.01 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.04 2.01 6.26 -2.39 -0.01 1.99 16 39 H 0.00 0.02 7.83 -2.39 -0.02 0.00 16 40 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.06 2.30 7.92 -2.39 -0.02 2.28 16 42 H 0.02 0.70 7.83 -2.39 -0.02 0.68 16 43 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.09 2.70 7.09 -2.39 -0.02 2.69 16 46 H 0.10 2.24 8.13 -2.38 -0.02 2.22 16 Total: -1.00 -75.56 358.22 1.62 -73.94 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.86 Total: 11.09 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 7.51 Total: 21.82 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -7.33 Total: -119.98 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.45 Total: -34.39 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -75.56 1.62 -73.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949061011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.682 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds