Wall clock time and date at job start Tue Mar 31 2020 18:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 128.03889 * 2 1 4 4 O 1.34019 * 106.67064 * 180.02562 * 3 2 1 5 5 N 1.20903 * 111.83961 * 359.70835 * 4 3 2 6 6 C 1.30985 * 111.44734 * 0.48040 * 5 4 3 7 7 C 1.48322 * 126.93920 * 179.80014 * 6 5 4 8 8 O 1.21499 * 119.99981 * 173.90720 * 7 6 5 9 9 N 1.34772 * 120.00425 * 353.90633 * 7 6 5 10 10 C 1.47159 * 120.98537 * 353.42215 * 9 7 6 11 11 C 1.53298 * 108.37036 * 230.59490 * 10 9 7 12 12 O 1.42960 * 109.23517 * 307.65255 * 11 10 9 13 13 C 1.42898 * 114.21071 * 62.48289 * 12 11 10 14 14 C 1.52989 * 109.56038 * 57.48238 * 13 12 11 15 15 C 1.53201 * 109.35177 * 59.05483 * 14 13 12 16 16 N 1.46927 * 108.77531 * 54.56824 * 15 14 13 17 17 C 1.36942 * 120.64430 * 126.30047 * 16 15 14 18 18 H 1.08002 * 119.99751 * 338.85235 * 17 16 15 19 19 C 1.38810 * 120.00150 * 158.85404 * 17 16 15 20 20 N 1.31614 * 119.99930 * 139.16963 * 19 17 16 21 21 Si 1.86801 * 120.00097 * 319.17070 * 19 17 16 22 22 H 1.48493 * 109.47142 * 270.00210 * 21 19 17 23 23 H 1.48507 * 109.47001 * 30.00103 * 21 19 17 24 24 H 1.48500 * 109.46932 * 149.99844 * 21 19 17 25 25 C 1.46934 * 118.71496 * 306.57325 * 16 15 14 26 26 C 1.52760 * 109.00038 * 53.38924 * 25 16 15 27 27 C 1.47152 * 120.99148 * 173.41975 * 9 7 6 28 28 H 1.08992 * 109.47498 * 269.97804 * 1 2 3 29 29 H 1.08993 * 109.46924 * 29.98336 * 1 2 3 30 30 H 1.09003 * 109.46817 * 149.98145 * 1 2 3 31 31 H 1.08003 * 126.66603 * 0.03117 * 3 2 1 32 32 H 1.09002 * 109.68197 * 110.87703 * 10 9 7 33 33 H 1.08996 * 109.68649 * 350.31873 * 10 9 7 34 34 H 1.08998 * 109.50986 * 187.72254 * 11 10 9 35 35 H 1.08996 * 109.51256 * 67.58004 * 11 10 9 36 36 H 1.08992 * 109.49229 * 299.08824 * 14 13 12 37 37 H 1.08997 * 109.50873 * 179.03042 * 14 13 12 38 38 H 1.09001 * 109.58354 * 294.77942 * 15 14 13 39 39 H 1.08998 * 109.70079 * 174.42470 * 15 14 13 40 40 H 0.97007 * 120.00493 * 354.92187 * 20 19 17 41 41 H 1.08998 * 109.58866 * 173.22102 * 25 16 15 42 42 H 1.09005 * 109.58287 * 293.65280 * 25 16 15 43 43 H 1.09000 * 109.55909 * 185.59589 * 26 25 16 44 44 H 1.08997 * 109.37686 * 65.57050 * 26 25 16 45 45 H 1.09004 * 109.67798 * 9.78869 * 27 9 7 46 46 H 1.08999 * 109.67696 * 249.24768 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5889 0.5774 -0.0006 5 7 3.5988 -0.6316 0.0048 6 6 2.3837 -1.1205 -0.0006 7 6 1.9993 -2.5531 -0.0008 8 8 0.8308 -2.8686 0.1056 9 7 2.9461 -3.5049 -0.1189 10 6 4.3477 -3.1494 -0.3924 11 6 4.8366 -3.9892 -1.5781 12 8 4.5717 -5.3698 -1.3185 13 6 3.1845 -5.6847 -1.1820 14 6 2.4369 -5.2652 -2.4491 15 6 3.0312 -5.9989 -3.6556 16 7 3.0062 -7.4437 -3.3897 17 6 2.4206 -8.3067 -4.2772 18 1 1.6912 -7.9409 -4.9848 19 6 2.7643 -9.6515 -4.2673 20 7 1.8339 -10.5697 -4.4207 21 14 4.5474 -10.1581 -4.0362 22 1 5.2105 -10.2538 -5.3613 23 1 5.2461 -9.1450 -3.2050 24 1 4.6030 -11.4782 -3.3583 25 6 3.6163 -7.9441 -2.1502 26 6 3.0204 -7.1900 -0.9629 27 6 2.6092 -4.9304 0.0217 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 2.0559 2.1075 0.0005 32 1 4.9584 -3.3625 0.4850 33 1 4.4164 -2.0901 -0.6396 34 1 5.9086 -3.8428 -1.7104 35 1 4.3122 -3.6817 -2.4828 36 1 2.5381 -4.1894 -2.5917 37 1 1.3820 -5.5214 -2.3510 38 1 4.0599 -5.6736 -3.8106 39 1 2.4409 -5.7808 -4.5455 40 1 0.9001 -10.3111 -4.4668 41 1 3.4102 -9.0093 -2.0456 42 1 4.6934 -7.7794 -2.1809 43 1 3.5364 -7.4828 -0.0485 44 1 1.9610 -7.4315 -0.8760 45 1 1.5261 -5.0508 0.0468 46 1 3.0439 -5.3213 0.9417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949223267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:19 Heat of formation + Delta-G solvation = 35.507066 kcal Electronic energy + Delta-G solvation = -30704.969903 eV Core-core repulsion = 26600.055871 eV Total energy + Delta-G solvation = -4104.914032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.48262 -40.76996 -38.95926 -36.48580 -35.08155 -34.87083 -33.20959 -32.60200 -31.37150 -30.31347 -29.01857 -28.59122 -27.35586 -24.73673 -23.93184 -23.32205 -22.41745 -22.05352 -21.08976 -19.96831 -19.10133 -18.19831 -17.99404 -17.40016 -17.12104 -16.24800 -15.83012 -15.51773 -15.07846 -14.98457 -14.48139 -14.27296 -14.10863 -13.88390 -13.73736 -13.65484 -13.46838 -13.31223 -13.26336 -12.95051 -12.25746 -12.14012 -11.98832 -11.91887 -11.61824 -11.46706 -11.28143 -10.78785 -10.65352 -10.58146 -10.51096 -10.39254 -10.19822 -9.87327 -9.79444 -9.67249 -9.60438 -9.17984 -8.58947 -8.16583 -6.98253 -6.35784 -3.10368 0.74624 1.29156 2.44838 2.74655 2.85801 3.51058 3.57756 3.64012 3.78935 3.88198 4.07942 4.40552 4.62562 4.68912 4.72039 4.81212 4.93985 5.00396 5.03314 5.07284 5.19545 5.25139 5.30181 5.33467 5.44960 5.49877 5.54732 5.64384 5.68765 5.78281 5.87705 5.90671 6.12058 6.14509 6.18773 6.27860 6.37339 6.43934 6.62594 6.79566 6.82207 7.01855 7.09880 7.41250 7.56454 7.82118 8.08030 8.48667 9.08070 9.73447 10.31448 11.06917 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.003114 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.418265 B = 8990.217754 C = 9404.940619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.150 4.150 3 C -0.064 4.064 4 O 0.117 5.883 5 N -0.329 5.329 6 C -0.021 4.021 7 C 0.596 3.404 8 O -0.518 6.518 9 N -0.594 5.594 10 C 0.057 3.943 11 C 0.045 3.955 12 O -0.359 6.359 13 C 0.118 3.882 14 C -0.152 4.152 15 C 0.154 3.846 16 N -0.597 5.597 17 C -0.366 4.366 18 H 0.066 0.934 19 C 0.004 3.996 20 N -0.893 5.893 21 Si 1.006 2.994 22 H -0.300 1.300 23 H -0.269 1.269 24 H -0.294 1.294 25 C 0.152 3.848 26 C -0.122 4.122 27 C 0.090 3.910 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.224 0.776 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.022 0.978 39 H 0.054 0.946 40 H 0.267 0.733 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 24.875 11.732 27.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.155 4.155 3 C -0.144 4.144 4 O 0.045 5.955 5 N -0.032 5.032 6 C -0.179 4.179 7 C 0.382 3.618 8 O -0.393 6.393 9 N -0.327 5.327 10 C -0.066 4.066 11 C -0.033 4.033 12 O -0.278 6.278 13 C 0.078 3.922 14 C -0.192 4.192 15 C 0.027 3.973 16 N -0.321 5.321 17 C -0.493 4.493 18 H 0.084 0.916 19 C -0.200 4.200 20 N -0.529 5.529 21 Si 0.836 3.164 22 H -0.228 1.228 23 H -0.194 1.194 24 H -0.221 1.221 25 C 0.026 3.974 26 C -0.162 4.162 27 C -0.032 4.032 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.240 0.760 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.121 0.879 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.183 22.622 11.815 25.862 hybrid contribution -1.818 1.872 -0.085 2.611 sum 2.365 24.494 11.730 27.261 Atomic orbital electron populations 1.20224 0.86433 1.03952 1.03316 1.21392 0.99230 0.90028 1.04852 1.25789 0.82288 1.01299 1.05067 1.84788 1.29600 1.15527 1.65615 1.74073 1.21281 0.91452 1.16443 1.23472 0.89547 0.97029 1.07892 1.16935 0.85205 0.82268 0.77376 1.90788 1.17218 1.81258 1.50035 1.47953 1.08683 1.06680 1.69432 1.23047 0.81085 1.02593 0.99880 1.22923 1.01517 0.82788 0.96023 1.88040 1.24117 1.23660 1.91933 1.21744 0.81487 0.95959 0.93035 1.22503 1.00772 0.99014 0.96895 1.20769 0.97181 0.85233 0.94101 1.44324 1.67927 1.01213 1.18641 1.20017 1.20580 0.90589 1.18120 0.91649 1.25942 1.04711 0.91307 0.98030 1.70900 1.01653 1.34756 1.45610 0.84777 0.79070 0.75759 0.76839 1.22794 1.19438 1.22064 1.21134 0.95440 0.96583 0.84212 1.22031 1.02373 0.91189 1.00622 1.22572 1.03135 0.78207 0.99308 0.90422 0.90901 0.89480 0.75978 0.90453 0.86479 0.87841 0.92336 0.93005 0.91042 0.96059 0.92728 0.92315 0.91628 0.94487 0.91795 0.90404 0.87946 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 9.97 36.01 0.36 -0.29 16 2 C -0.15 -1.37 6.34 -104.11 -0.66 -2.03 16 3 C -0.06 -0.39 12.24 29.69 0.36 -0.02 16 4 O 0.12 0.97 11.18 17.24 0.19 1.17 16 5 N -0.33 -3.54 8.69 33.29 0.29 -3.25 16 6 C -0.02 -0.25 6.88 -82.53 -0.57 -0.82 16 7 C 0.60 8.61 7.72 -12.11 -0.09 8.51 16 8 O -0.52 -8.60 14.89 5.37 0.08 -8.52 16 9 N -0.59 -8.26 2.52 -173.23 -0.44 -8.69 16 10 C 0.06 0.68 6.28 -3.53 -0.02 0.66 16 11 C 0.05 0.59 6.60 37.31 0.25 0.84 16 12 O -0.36 -5.95 9.01 -35.23 -0.32 -6.27 16 13 C 0.12 1.97 0.68 -90.49 -0.06 1.91 16 14 C -0.15 -2.76 4.33 -26.63 -0.12 -2.87 16 15 C 0.15 3.25 6.29 -3.71 -0.02 3.22 16 16 N -0.60 -14.72 2.82 -172.57 -0.49 -15.20 16 17 C -0.37 -10.41 9.73 -15.06 -0.15 -10.56 16 18 H 0.07 1.99 8.01 -52.49 -0.42 1.57 16 19 C 0.00 0.13 4.76 -17.43 -0.08 0.05 16 20 N -0.89 -27.50 13.70 55.49 0.76 -26.74 16 21 Si 1.01 25.59 26.88 -169.99 -4.57 21.02 16 22 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 23 H -0.27 -6.38 4.89 56.52 0.28 -6.10 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 C 0.15 3.42 4.13 -3.93 -0.02 3.41 16 26 C -0.12 -2.25 5.09 -26.85 -0.14 -2.38 16 27 C 0.09 1.32 5.31 -3.55 -0.02 1.30 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.90 7.01 -51.93 -0.36 0.53 16 31 H 0.22 0.27 8.06 -52.48 -0.42 -0.16 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.12 1.33 4.39 -52.71 -0.23 1.10 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.81 6.29 -51.93 -0.33 0.48 16 36 H 0.05 0.87 6.15 -51.93 -0.32 0.55 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 39 H 0.05 1.17 7.90 -51.93 -0.41 0.76 16 40 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 41 H 0.07 1.58 5.39 -51.93 -0.28 1.30 16 42 H 0.04 0.85 6.50 -51.93 -0.34 0.51 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.10 1.60 7.06 -51.93 -0.37 1.23 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 353.59 15.07 5.33 5.33 Total: -1.00 -33.80 353.59 -6.68 -40.48 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.54 Total: -0.26 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.98 Total: 0.93 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.13 Total: -53.88 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.04 Total: -13.62 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -4.57 Total: 21.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.80 -6.68 -40.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949223267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.991 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds