Wall clock time and date at job start Tue Mar 31 2020 18:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 128.03889 * 2 1 4 4 O 1.34019 * 106.67064 * 180.02562 * 3 2 1 5 5 N 1.20903 * 111.83961 * 359.70835 * 4 3 2 6 6 C 1.30985 * 111.44734 * 0.48040 * 5 4 3 7 7 C 1.48322 * 126.93920 * 179.80014 * 6 5 4 8 8 O 1.21499 * 119.99981 * 173.90720 * 7 6 5 9 9 N 1.34772 * 120.00425 * 353.90633 * 7 6 5 10 10 C 1.47159 * 120.98537 * 353.42215 * 9 7 6 11 11 C 1.53298 * 108.37036 * 230.59490 * 10 9 7 12 12 O 1.42960 * 109.23517 * 307.65255 * 11 10 9 13 13 C 1.42898 * 114.21071 * 62.48289 * 12 11 10 14 14 C 1.52989 * 109.56038 * 57.48238 * 13 12 11 15 15 C 1.53201 * 109.35177 * 59.05483 * 14 13 12 16 16 N 1.46927 * 108.77531 * 54.56824 * 15 14 13 17 17 C 1.36942 * 120.64430 * 126.30047 * 16 15 14 18 18 H 1.08002 * 119.99751 * 338.85235 * 17 16 15 19 19 C 1.38810 * 120.00150 * 158.85404 * 17 16 15 20 20 N 1.31614 * 119.99930 * 139.16963 * 19 17 16 21 21 Si 1.86801 * 120.00097 * 319.17070 * 19 17 16 22 22 H 1.48493 * 109.47142 * 270.00210 * 21 19 17 23 23 H 1.48507 * 109.47001 * 30.00103 * 21 19 17 24 24 H 1.48500 * 109.46932 * 149.99844 * 21 19 17 25 25 C 1.46934 * 118.71496 * 306.57325 * 16 15 14 26 26 C 1.52760 * 109.00038 * 53.38924 * 25 16 15 27 27 C 1.47152 * 120.99148 * 173.41975 * 9 7 6 28 28 H 1.08992 * 109.47498 * 269.97804 * 1 2 3 29 29 H 1.08993 * 109.46924 * 29.98336 * 1 2 3 30 30 H 1.09003 * 109.46817 * 149.98145 * 1 2 3 31 31 H 1.08003 * 126.66603 * 0.03117 * 3 2 1 32 32 H 1.09002 * 109.68197 * 110.87703 * 10 9 7 33 33 H 1.08996 * 109.68649 * 350.31873 * 10 9 7 34 34 H 1.08998 * 109.50986 * 187.72254 * 11 10 9 35 35 H 1.08996 * 109.51256 * 67.58004 * 11 10 9 36 36 H 1.08992 * 109.49229 * 299.08824 * 14 13 12 37 37 H 1.08997 * 109.50873 * 179.03042 * 14 13 12 38 38 H 1.09001 * 109.58354 * 294.77942 * 15 14 13 39 39 H 1.08998 * 109.70079 * 174.42470 * 15 14 13 40 40 H 0.97007 * 120.00493 * 354.92187 * 20 19 17 41 41 H 1.08998 * 109.58866 * 173.22102 * 25 16 15 42 42 H 1.09005 * 109.58287 * 293.65280 * 25 16 15 43 43 H 1.09000 * 109.55909 * 185.59589 * 26 25 16 44 44 H 1.08997 * 109.37686 * 65.57050 * 26 25 16 45 45 H 1.09004 * 109.67798 * 9.78869 * 27 9 7 46 46 H 1.08999 * 109.67696 * 249.24768 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5889 0.5774 -0.0006 5 7 3.5988 -0.6316 0.0048 6 6 2.3837 -1.1205 -0.0006 7 6 1.9993 -2.5531 -0.0008 8 8 0.8308 -2.8686 0.1056 9 7 2.9461 -3.5049 -0.1189 10 6 4.3477 -3.1494 -0.3924 11 6 4.8366 -3.9892 -1.5781 12 8 4.5717 -5.3698 -1.3185 13 6 3.1845 -5.6847 -1.1820 14 6 2.4369 -5.2652 -2.4491 15 6 3.0312 -5.9989 -3.6556 16 7 3.0062 -7.4437 -3.3897 17 6 2.4206 -8.3067 -4.2772 18 1 1.6912 -7.9409 -4.9848 19 6 2.7643 -9.6515 -4.2673 20 7 1.8339 -10.5697 -4.4207 21 14 4.5474 -10.1581 -4.0362 22 1 5.2105 -10.2538 -5.3613 23 1 5.2461 -9.1450 -3.2050 24 1 4.6030 -11.4782 -3.3583 25 6 3.6163 -7.9441 -2.1502 26 6 3.0204 -7.1900 -0.9629 27 6 2.6092 -4.9304 0.0217 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 2.0559 2.1075 0.0005 32 1 4.9584 -3.3625 0.4850 33 1 4.4164 -2.0901 -0.6396 34 1 5.9086 -3.8428 -1.7104 35 1 4.3122 -3.6817 -2.4828 36 1 2.5381 -4.1894 -2.5917 37 1 1.3820 -5.5214 -2.3510 38 1 4.0599 -5.6736 -3.8106 39 1 2.4409 -5.7808 -4.5455 40 1 0.9001 -10.3111 -4.4668 41 1 3.4102 -9.0093 -2.0456 42 1 4.6934 -7.7794 -2.1809 43 1 3.5364 -7.4828 -0.0485 44 1 1.9610 -7.4315 -0.8760 45 1 1.5261 -5.0508 0.0468 46 1 3.0439 -5.3213 0.9417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949223267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:18 Heat of formation + Delta-G solvation = 12.634625 kcal Electronic energy + Delta-G solvation = -30705.961726 eV Core-core repulsion = 26600.055871 eV Total energy + Delta-G solvation = -4105.905856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.19583 -41.97209 -40.19933 -38.07032 -36.08312 -35.78235 -34.85350 -33.61102 -33.00669 -32.00308 -30.26770 -29.34700 -28.58299 -26.13384 -25.06697 -24.90854 -23.90342 -22.72622 -22.64325 -21.11502 -20.47779 -19.45342 -18.93390 -18.83002 -18.05079 -17.41668 -17.16113 -16.84731 -16.31402 -16.28266 -15.88982 -15.83451 -15.45353 -15.17740 -15.08078 -14.78531 -14.68387 -14.32481 -14.12507 -13.99353 -13.82045 -13.57427 -13.43473 -13.14620 -13.05046 -12.84653 -12.46394 -12.35143 -12.23710 -12.03137 -11.81890 -11.65630 -11.63841 -11.44210 -11.28684 -11.09001 -10.94291 -10.41745 -10.38456 -9.73652 -9.06190 -8.65822 -5.34795 -0.03527 0.67989 1.46351 1.52990 1.56339 1.77922 1.87558 2.19150 2.58841 2.62096 2.71892 2.90852 3.30783 3.41478 3.56360 3.65541 3.71861 3.75267 3.87292 4.02744 4.09413 4.21134 4.24245 4.27975 4.42904 4.47059 4.53710 4.55076 4.65270 4.73825 4.74680 4.77208 4.80871 4.81752 4.87647 4.90939 4.96485 5.02618 5.12168 5.16978 5.29345 5.39396 5.80434 5.98535 6.16927 6.23226 6.65998 6.88820 7.01343 7.63341 8.14532 8.76003 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.003114 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.418265 B = 8990.217754 C = 9404.940619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.176 4.176 3 C -0.026 4.026 4 O 0.129 5.871 5 N -0.340 5.340 6 C -0.052 4.052 7 C 0.591 3.409 8 O -0.552 6.552 9 N -0.598 5.598 10 C 0.063 3.937 11 C 0.041 3.959 12 O -0.372 6.372 13 C 0.126 3.874 14 C -0.139 4.139 15 C 0.154 3.846 16 N -0.612 5.612 17 C -0.360 4.360 18 H 0.030 0.970 19 C -0.044 4.044 20 N -0.926 5.926 21 Si 1.058 2.942 22 H -0.298 1.298 23 H -0.241 1.241 24 H -0.294 1.294 25 C 0.150 3.850 26 C -0.118 4.118 27 C 0.097 3.903 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.278 0.722 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.033 0.967 39 H 0.040 0.960 40 H 0.253 0.747 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.827 28.216 13.428 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.181 4.181 3 C -0.107 4.107 4 O 0.054 5.946 5 N -0.042 5.042 6 C -0.209 4.209 7 C 0.378 3.622 8 O -0.429 6.429 9 N -0.331 5.331 10 C -0.059 4.059 11 C -0.036 4.036 12 O -0.291 6.291 13 C 0.086 3.914 14 C -0.178 4.178 15 C 0.029 3.971 16 N -0.336 5.336 17 C -0.488 4.488 18 H 0.048 0.952 19 C -0.243 4.243 20 N -0.565 5.565 21 Si 0.883 3.117 22 H -0.226 1.226 23 H -0.166 1.166 24 H -0.221 1.221 25 C 0.025 3.975 26 C -0.157 4.157 27 C -0.025 4.025 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.293 0.707 32 H 0.108 0.892 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.537 25.984 13.525 30.014 hybrid contribution -2.584 1.025 -0.655 2.855 sum 3.953 27.009 12.871 30.179 Atomic orbital electron populations 1.20197 0.86026 1.03854 1.03453 1.21662 0.99882 0.90128 1.06439 1.26657 0.80270 1.02568 1.01157 1.84758 1.30769 1.14580 1.64476 1.74012 1.20797 0.92487 1.16888 1.23333 0.90972 0.96211 1.10373 1.17339 0.84790 0.83488 0.76559 1.90764 1.18528 1.82072 1.51496 1.48045 1.09507 1.06158 1.69344 1.23114 0.79962 1.02935 0.99886 1.23165 1.03196 0.81181 0.96036 1.88008 1.23185 1.25821 1.92074 1.21504 0.82003 0.95087 0.92848 1.22316 0.99574 0.99318 0.96641 1.20830 0.97691 0.83626 0.94995 1.44407 1.68143 1.02118 1.18981 1.19877 1.19519 0.91391 1.18041 0.95191 1.26997 1.07425 0.91614 0.98267 1.71012 1.01264 1.35363 1.48902 0.84087 0.74420 0.76028 0.77191 1.22613 1.16566 1.22098 1.21147 0.95615 0.96086 0.84666 1.21910 1.01836 0.92003 0.99966 1.22356 1.02275 0.78981 0.98913 0.90215 0.87771 0.92738 0.70703 0.89195 0.85521 0.85026 0.93244 0.91651 0.92983 0.94918 0.94146 0.93762 0.93586 0.94023 0.88812 0.91385 0.89333 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 9.97 71.24 0.71 -0.41 16 2 C -0.18 -2.81 6.34 -19.54 -0.12 -2.93 16 3 C -0.03 -0.20 12.24 67.14 0.82 0.62 16 4 O 0.13 1.68 11.18 71.85 0.80 2.48 16 5 N -0.34 -6.46 8.69 -49.51 -0.43 -6.89 16 6 C -0.05 -1.17 6.88 42.96 0.30 -0.88 16 7 C 0.59 16.84 7.72 86.93 0.67 17.52 16 8 O -0.55 -18.77 14.89 -3.71 -0.06 -18.82 16 9 N -0.60 -15.88 2.52 -820.27 -2.07 -17.95 16 10 C 0.06 1.36 6.28 86.35 0.54 1.90 16 11 C 0.04 0.97 6.60 72.08 0.48 1.45 16 12 O -0.37 -11.39 9.01 -148.98 -1.34 -12.73 16 13 C 0.13 4.06 0.68 -10.71 -0.01 4.06 16 14 C -0.14 -5.04 4.33 30.66 0.13 -4.91 16 15 C 0.15 6.55 6.29 86.37 0.54 7.09 16 16 N -0.61 -30.43 2.82 -699.88 -1.97 -32.40 16 17 C -0.36 -21.16 9.73 84.03 0.82 -20.34 16 18 H 0.03 1.94 8.01 -2.91 -0.02 1.91 16 19 C -0.04 -2.63 4.76 84.86 0.40 -2.23 16 20 N -0.93 -59.06 13.70 21.65 0.30 -58.77 16 21 Si 1.06 52.31 26.88 68.60 1.84 54.16 16 22 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 23 H -0.24 -10.76 4.89 99.48 0.49 -10.28 16 24 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 25 C 0.15 6.61 4.13 86.22 0.36 6.97 16 26 C -0.12 -4.20 5.09 30.51 0.16 -4.04 16 27 C 0.10 2.76 5.31 86.34 0.46 3.22 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 1.15 7.01 -2.39 -0.02 1.13 16 31 H 0.28 -1.14 8.06 -2.91 -0.02 -1.16 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.13 2.56 4.39 -3.93 -0.02 2.54 16 34 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.05 1.26 6.29 -2.39 -0.02 1.24 16 36 H 0.06 2.18 6.15 -2.39 -0.01 2.17 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.03 1.33 7.83 -2.39 -0.02 1.32 16 39 H 0.04 1.79 7.90 -2.39 -0.02 1.77 16 40 H 0.25 16.30 8.73 -92.70 -0.81 15.49 16 41 H 0.05 2.20 5.39 -2.39 -0.01 2.19 16 42 H 0.04 1.82 6.50 -2.38 -0.02 1.80 16 43 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.09 2.78 7.06 -2.39 -0.02 2.77 16 46 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -77.16 353.59 4.07 -73.08 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.74 Total: 10.76 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.25 Total: 7.08 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -4.17 Total: -116.01 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.59 Total: -29.07 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 1.84 Total: 54.16 kcal Total: -77.16 4.07 -73.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949223267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.719 kcal (2) G-P(sol) polarization free energy of solvation -77.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds